Wall clock time and date at job start Tue Mar 31 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47285 * 2 1 4 4 H 1.09003 * 109.99623 * 305.83571 * 3 2 1 5 5 C 1.54321 * 109.88154 * 184.74358 * 3 2 1 6 6 H 1.09003 * 110.72253 * 336.75098 * 5 3 2 7 7 N 1.46504 * 110.72031 * 100.02226 * 5 3 2 8 8 C 1.34770 * 119.99955 * 204.99836 * 7 5 3 9 9 O 1.21547 * 120.00227 * 0.02562 * 8 7 5 10 10 C 1.47934 * 120.00159 * 179.97438 * 8 7 5 11 11 C 1.39976 * 120.11951 * 179.72613 * 10 8 7 12 12 C 1.38426 * 117.96830 * 179.78611 * 11 10 8 13 13 C 1.39343 * 118.03683 * 0.48395 * 12 11 10 14 14 O 1.35513 * 120.02818 * 179.73207 * 13 12 11 15 15 C 1.42898 * 117.00170 * 180.02562 * 14 13 12 16 16 N 1.32679 * 119.94362 * 359.74553 * 13 12 11 17 17 N 1.28357 * 122.19740 * 0.02562 * 16 13 12 18 18 C 1.55155 * 102.94289 * 218.38436 * 5 3 2 19 19 C 1.54914 * 101.57861 * 35.50512 * 18 5 3 20 20 N 1.47021 * 109.88344 * 66.93317 * 3 2 1 21 21 C 1.36938 * 125.64876 * 298.31966 * 20 3 2 22 22 H 1.07996 * 119.99820 * 337.00534 * 21 20 3 23 23 C 1.38813 * 119.99534 * 156.99916 * 21 20 3 24 24 N 1.31625 * 119.99690 * 158.23827 * 23 21 20 25 25 Si 1.86794 * 120.00377 * 338.23501 * 23 21 20 26 26 H 1.48506 * 109.46983 * 92.06475 * 25 23 21 27 27 H 1.48495 * 109.47358 * 212.06408 * 25 23 21 28 28 H 1.48500 * 109.46984 * 332.06708 * 25 23 21 29 29 H 1.08990 * 109.47105 * 173.20834 * 1 2 3 30 30 H 1.09003 * 109.46614 * 293.20851 * 1 2 3 31 31 H 1.09002 * 109.46434 * 53.20468 * 1 2 3 32 32 H 1.08998 * 109.47054 * 239.99075 * 2 1 3 33 33 H 1.09005 * 109.46578 * 119.99811 * 2 1 3 34 34 H 0.97002 * 119.99811 * 25.00064 * 7 5 3 35 35 H 1.07993 * 121.01512 * 0.02562 * 11 10 8 36 36 H 1.07996 * 120.97845 * 180.21150 * 12 11 10 37 37 H 1.09008 * 109.47324 * 299.99547 * 15 14 13 38 38 H 1.09006 * 109.47445 * 59.99275 * 15 14 13 39 39 H 1.09005 * 109.47496 * 179.97438 * 15 14 13 40 40 H 1.09003 * 111.00393 * 153.57597 * 18 5 3 41 41 H 1.08994 * 111.00392 * 277.43065 * 18 5 3 42 42 H 1.09006 * 110.36508 * 204.15374 * 19 18 5 43 43 H 1.08994 * 110.36669 * 81.82658 * 19 18 5 44 44 H 0.96995 * 119.99864 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5990 1.9938 -0.8304 5 6 3.5786 1.4552 -0.1200 6 1 4.0001 0.5109 0.2247 7 7 3.9887 1.7350 -1.4984 8 6 5.1891 1.3134 -1.9430 9 8 5.9312 0.7006 -1.2007 10 6 5.6030 1.5955 -3.3350 11 6 6.8515 1.1637 -3.7977 12 6 7.1916 1.4478 -5.1091 13 6 6.2750 2.1547 -5.8850 14 8 6.5687 2.4592 -7.1724 15 6 5.5828 3.1861 -7.9083 16 7 5.1147 2.5295 -5.3621 17 7 4.7940 2.2641 -4.1480 18 6 3.9911 2.6169 0.8220 19 6 2.9427 2.4859 1.9549 20 7 1.6961 2.0945 1.2720 21 6 0.4278 2.3043 1.7439 22 1 -0.4054 2.3358 1.0575 23 6 0.2132 2.4764 3.1045 24 7 -0.8737 3.0865 3.5273 25 14 1.4669 1.8420 4.3354 26 1 2.4404 2.9185 4.6499 27 1 0.7718 1.4244 5.5794 28 1 2.1854 0.6790 3.7554 29 1 -0.3633 -1.0204 -0.1215 30 1 -0.3633 0.4050 0.9446 31 1 -0.3632 0.6156 -0.8230 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3963 2.2237 -2.0909 35 1 7.5272 0.6222 -3.1524 36 1 8.1410 1.1347 -5.5175 37 1 4.6593 2.6083 -7.9474 38 1 5.3935 4.1408 -7.4173 39 1 5.9435 3.3642 -8.9214 40 1 5.0008 2.4695 1.2052 41 1 3.9030 3.5791 0.3175 42 1 2.8126 3.4410 2.4638 43 1 3.2448 1.7152 2.6640 44 1 -1.0235 3.2070 4.4780 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087785206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:02 Heat of formation + Delta-G solvation = 18.299108 kcal Electronic energy + Delta-G solvation = -26983.743976 eV Core-core repulsion = 23131.340031 eV Total energy + Delta-G solvation = -3852.403944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71415 -39.91170 -38.83933 -37.93244 -34.40990 -33.61641 -32.55029 -32.50758 -31.80711 -29.37462 -28.08962 -27.17679 -25.71342 -24.54573 -23.94140 -22.17539 -21.63566 -20.45885 -19.73089 -19.11541 -18.28683 -17.80226 -16.94721 -16.79566 -16.16695 -15.30526 -15.21480 -15.09287 -14.89218 -14.61354 -14.43042 -14.15719 -13.64678 -13.55610 -13.10794 -12.83241 -12.53783 -12.45460 -12.31736 -12.21623 -12.02234 -11.87734 -11.41154 -11.08291 -10.92284 -10.75352 -10.67090 -10.44447 -10.29424 -10.24996 -10.13484 -10.01152 -9.78765 -9.61151 -9.30193 -8.87846 -8.60569 -7.01687 -5.95150 -3.27124 0.16401 0.30730 2.35463 2.44672 2.93985 3.34609 3.37109 3.50268 3.52610 3.55031 3.84491 4.31075 4.42760 4.55394 4.57771 4.76858 4.84518 4.91431 5.01700 5.15386 5.17818 5.19979 5.30372 5.32355 5.56229 5.60877 5.81993 5.89753 5.94897 6.09717 6.15935 6.30126 6.39035 6.46071 6.54621 6.61549 6.63393 6.74471 6.77006 7.03380 7.33201 7.47005 7.75648 8.03175 8.14025 8.31752 8.83137 9.68241 10.18074 11.20262 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.002857 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.957900 B = 9798.563067 C =10188.944800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.158 3.842 4 H 0.049 0.951 5 C 0.131 3.869 6 H 0.101 0.899 7 N -0.691 5.691 8 C 0.579 3.421 9 O -0.532 6.532 10 C -0.003 4.003 11 C -0.031 4.031 12 C -0.140 4.140 13 C 0.276 3.724 14 O -0.297 6.297 15 C 0.032 3.968 16 N -0.297 5.297 17 N -0.167 5.167 18 C -0.141 4.141 19 C 0.112 3.888 20 N -0.598 5.598 21 C -0.233 4.233 22 H 0.096 0.904 23 C 0.024 3.976 24 N -0.907 5.907 25 Si 0.877 3.123 26 H -0.288 1.288 27 H -0.303 1.303 28 H -0.270 1.270 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.411 0.589 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.030 0.970 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.915 -2.576 -20.140 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C 0.050 3.950 4 H 0.067 0.933 5 C 0.026 3.974 6 H 0.119 0.881 7 N -0.341 5.341 8 C 0.361 3.639 9 O -0.408 6.408 10 C -0.152 4.152 11 C -0.060 4.060 12 C -0.170 4.170 13 C 0.092 3.908 14 O -0.200 6.200 15 C -0.063 4.063 16 N -0.155 5.155 17 N -0.015 5.015 18 C -0.180 4.180 19 C -0.014 4.014 20 N -0.324 5.324 21 C -0.360 4.360 22 H 0.113 0.887 23 C -0.175 4.175 24 N -0.550 5.550 25 Si 0.707 3.293 26 H -0.215 1.215 27 H -0.231 1.231 28 H -0.196 1.196 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.248 0.752 35 H 0.188 0.812 36 H 0.182 0.818 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.041 -2.221 -19.862 25.014 hybrid contribution 1.527 -0.714 0.592 1.787 sum 16.569 -2.935 -19.271 25.583 Atomic orbital electron populations 1.21946 0.95327 0.99363 1.04466 1.21905 0.97320 0.97216 0.99988 1.21203 0.89777 0.92764 0.91215 0.93338 1.22236 0.96103 0.99465 0.79570 0.88144 1.45899 1.17613 1.56128 1.14443 1.17376 0.82391 0.79612 0.84489 1.90810 1.52824 1.41173 1.56002 1.22785 0.94372 1.00963 0.97111 1.22321 0.95390 0.93735 0.94505 1.21543 1.01575 1.00482 0.93375 1.21683 0.91649 0.90901 0.86563 1.86214 1.44395 1.70583 1.18850 1.23095 0.91578 0.96274 0.95362 1.73216 1.15026 1.20809 1.06496 1.73021 1.25892 1.05954 0.96677 1.23150 0.99089 0.98317 0.97464 1.21967 0.86331 0.98923 0.94147 1.44754 1.01847 1.66265 1.19551 1.18573 0.82823 1.43212 0.91408 0.88680 1.25088 0.96169 0.99515 0.96699 1.69830 1.27947 1.42451 1.14788 0.87009 0.81008 0.80100 0.81172 1.21454 1.23081 1.19554 0.94953 0.88778 0.93930 0.93853 0.92405 0.75217 0.81179 0.81848 0.91516 0.91523 0.87849 0.91203 0.90805 0.92096 0.95253 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.06 37.16 0.34 -2.56 16 2 C -0.12 -2.27 5.45 -26.73 -0.15 -2.41 16 3 C 0.16 2.97 2.99 -66.95 -0.20 2.77 16 4 H 0.05 0.91 7.72 -51.93 -0.40 0.51 16 5 C 0.13 2.18 2.84 -66.10 -0.19 1.99 16 6 H 0.10 1.76 7.26 -51.93 -0.38 1.38 16 7 N -0.69 -9.86 5.17 -52.94 -0.27 -10.13 16 8 C 0.58 8.16 7.81 -12.29 -0.10 8.07 16 9 O -0.53 -8.69 16.03 5.32 0.09 -8.61 16 10 C 0.00 -0.04 6.83 -82.85 -0.57 -0.60 16 11 C -0.03 -0.28 9.72 -38.86 -0.38 -0.66 16 12 C -0.14 -1.09 10.14 -39.10 -0.40 -1.48 16 13 C 0.28 2.66 7.57 -16.77 -0.13 2.53 16 14 O -0.30 -2.46 10.48 -18.23 -0.19 -2.65 16 15 C 0.03 0.19 10.39 101.05 1.05 1.24 16 16 N -0.30 -3.45 10.40 30.54 0.32 -3.13 16 17 N -0.17 -2.09 10.73 33.32 0.36 -1.73 16 18 C -0.14 -2.43 6.77 -24.58 -0.17 -2.60 16 19 C 0.11 2.37 4.78 -2.53 -0.01 2.36 16 20 N -0.60 -13.65 2.88 -162.57 -0.47 -14.12 16 21 C -0.23 -6.20 7.98 -15.06 -0.12 -6.32 16 22 H 0.10 2.68 7.12 -52.49 -0.37 2.30 16 23 C 0.02 0.68 5.44 -17.43 -0.09 0.59 16 24 N -0.91 -27.25 13.97 55.49 0.78 -26.47 16 25 Si 0.88 22.16 24.47 -169.99 -4.16 18.00 16 26 H -0.29 -7.12 7.01 56.52 0.40 -6.73 16 27 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 28 H -0.27 -6.69 6.35 56.52 0.36 -6.33 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 2.10 5.37 -51.93 -0.28 1.82 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.41 5.44 7.72 -40.82 -0.31 5.13 16 35 H 0.17 1.27 7.71 -52.49 -0.40 0.86 16 36 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.07 0.41 8.11 -51.92 -0.42 -0.01 16 38 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.37 7.31 -51.93 -0.38 0.99 16 43 H 0.03 0.66 5.27 -51.93 -0.27 0.38 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -31.86 357.40 -5.48 -37.34 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.21 Total: 3.23 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.10 Total: 2.90 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.71 Total: -55.59 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.11 Total: -11.25 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.16 Total: 18.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.86 -5.48 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087785206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.639 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds