Wall clock time and date at job start Tue Mar 31 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47285 * 2 1 4 4 H 1.09003 * 109.99623 * 305.83571 * 3 2 1 5 5 C 1.54321 * 109.88154 * 184.74358 * 3 2 1 6 6 H 1.09003 * 110.72253 * 336.75098 * 5 3 2 7 7 N 1.46504 * 110.72031 * 100.02226 * 5 3 2 8 8 C 1.34770 * 119.99955 * 204.99836 * 7 5 3 9 9 O 1.21547 * 120.00227 * 0.02562 * 8 7 5 10 10 C 1.47934 * 120.00159 * 179.97438 * 8 7 5 11 11 C 1.39976 * 120.11951 * 179.72613 * 10 8 7 12 12 C 1.38426 * 117.96830 * 179.78611 * 11 10 8 13 13 C 1.39343 * 118.03683 * 0.48395 * 12 11 10 14 14 O 1.35513 * 120.02818 * 179.73207 * 13 12 11 15 15 C 1.42898 * 117.00170 * 180.02562 * 14 13 12 16 16 N 1.32679 * 119.94362 * 359.74553 * 13 12 11 17 17 N 1.28357 * 122.19740 * 0.02562 * 16 13 12 18 18 C 1.55155 * 102.94289 * 218.38436 * 5 3 2 19 19 C 1.54914 * 101.57861 * 35.50512 * 18 5 3 20 20 N 1.47021 * 109.88344 * 66.93317 * 3 2 1 21 21 C 1.36938 * 125.64876 * 298.31966 * 20 3 2 22 22 H 1.07996 * 119.99820 * 337.00534 * 21 20 3 23 23 C 1.38813 * 119.99534 * 156.99916 * 21 20 3 24 24 N 1.31625 * 119.99690 * 158.23827 * 23 21 20 25 25 Si 1.86794 * 120.00377 * 338.23501 * 23 21 20 26 26 H 1.48506 * 109.46983 * 92.06475 * 25 23 21 27 27 H 1.48495 * 109.47358 * 212.06408 * 25 23 21 28 28 H 1.48500 * 109.46984 * 332.06708 * 25 23 21 29 29 H 1.08990 * 109.47105 * 173.20834 * 1 2 3 30 30 H 1.09003 * 109.46614 * 293.20851 * 1 2 3 31 31 H 1.09002 * 109.46434 * 53.20468 * 1 2 3 32 32 H 1.08998 * 109.47054 * 239.99075 * 2 1 3 33 33 H 1.09005 * 109.46578 * 119.99811 * 2 1 3 34 34 H 0.97002 * 119.99811 * 25.00064 * 7 5 3 35 35 H 1.07993 * 121.01512 * 0.02562 * 11 10 8 36 36 H 1.07996 * 120.97845 * 180.21150 * 12 11 10 37 37 H 1.09008 * 109.47324 * 299.99547 * 15 14 13 38 38 H 1.09006 * 109.47445 * 59.99275 * 15 14 13 39 39 H 1.09005 * 109.47496 * 179.97438 * 15 14 13 40 40 H 1.09003 * 111.00393 * 153.57597 * 18 5 3 41 41 H 1.08994 * 111.00392 * 277.43065 * 18 5 3 42 42 H 1.09006 * 110.36508 * 204.15374 * 19 18 5 43 43 H 1.08994 * 110.36669 * 81.82658 * 19 18 5 44 44 H 0.96995 * 119.99864 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5990 1.9938 -0.8304 5 6 3.5786 1.4552 -0.1200 6 1 4.0001 0.5109 0.2247 7 7 3.9887 1.7350 -1.4984 8 6 5.1891 1.3134 -1.9430 9 8 5.9312 0.7006 -1.2007 10 6 5.6030 1.5955 -3.3350 11 6 6.8515 1.1637 -3.7977 12 6 7.1916 1.4478 -5.1091 13 6 6.2750 2.1547 -5.8850 14 8 6.5687 2.4592 -7.1724 15 6 5.5828 3.1861 -7.9083 16 7 5.1147 2.5295 -5.3621 17 7 4.7940 2.2641 -4.1480 18 6 3.9911 2.6169 0.8220 19 6 2.9427 2.4859 1.9549 20 7 1.6961 2.0945 1.2720 21 6 0.4278 2.3043 1.7439 22 1 -0.4054 2.3358 1.0575 23 6 0.2132 2.4764 3.1045 24 7 -0.8737 3.0865 3.5273 25 14 1.4669 1.8420 4.3354 26 1 2.4404 2.9185 4.6499 27 1 0.7718 1.4244 5.5794 28 1 2.1854 0.6790 3.7554 29 1 -0.3633 -1.0204 -0.1215 30 1 -0.3633 0.4050 0.9446 31 1 -0.3632 0.6156 -0.8230 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3963 2.2237 -2.0909 35 1 7.5272 0.6222 -3.1524 36 1 8.1410 1.1347 -5.5175 37 1 4.6593 2.6083 -7.9474 38 1 5.3935 4.1408 -7.4173 39 1 5.9435 3.3642 -8.9214 40 1 5.0008 2.4695 1.2052 41 1 3.9030 3.5791 0.3175 42 1 2.8126 3.4410 2.4638 43 1 3.2448 1.7152 2.6640 44 1 -1.0235 3.2070 4.4780 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087785206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:01 Heat of formation + Delta-G solvation = -6.638084 kcal Electronic energy + Delta-G solvation = -26984.825333 eV Core-core repulsion = 23131.340031 eV Total energy + Delta-G solvation = -3853.485302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49422 -41.06100 -39.77615 -39.18346 -35.77922 -34.40035 -34.21592 -33.95393 -33.00405 -31.04387 -28.83263 -28.50351 -26.81232 -25.85044 -24.93198 -23.86945 -22.84614 -21.75625 -21.24578 -19.85773 -19.19194 -18.93462 -18.63260 -17.56462 -17.46815 -16.99837 -16.35343 -16.19303 -15.78530 -15.63225 -15.33132 -15.23329 -15.07112 -14.81034 -14.63541 -14.40494 -14.06035 -13.84269 -13.57971 -13.25825 -13.05178 -12.93553 -12.90146 -12.63039 -12.58832 -12.37376 -12.08091 -11.97143 -11.68981 -11.51974 -11.45869 -11.34186 -11.16626 -10.90621 -10.70088 -10.37647 -10.07929 -8.96725 -8.11518 -5.38590 -0.63536 -0.38154 1.33361 1.42228 1.49580 1.49909 1.69993 1.89654 2.46296 2.47635 2.72937 3.07531 3.11657 3.33117 3.60930 3.66185 3.74952 3.76208 3.83316 4.12585 4.26102 4.27037 4.38440 4.39675 4.42283 4.46706 4.60085 4.66227 4.71251 4.74980 4.86256 4.91290 4.91733 4.99260 5.08028 5.15198 5.19914 5.33013 5.54680 5.68271 5.81618 5.83657 6.18610 6.35166 6.81166 6.96589 7.30917 7.59501 8.16258 9.07957 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.002857 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.957900 B = 9798.563067 C =10188.944800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.154 3.846 4 H 0.054 0.946 5 C 0.146 3.854 6 H 0.098 0.902 7 N -0.687 5.687 8 C 0.584 3.416 9 O -0.554 6.554 10 C -0.017 4.017 11 C -0.029 4.029 12 C -0.122 4.122 13 C 0.271 3.729 14 O -0.297 6.297 15 C 0.026 3.974 16 N -0.318 5.318 17 N -0.186 5.186 18 C -0.128 4.128 19 C 0.105 3.895 20 N -0.613 5.613 21 C -0.204 4.204 22 H 0.071 0.929 23 C -0.034 4.034 24 N -0.956 5.956 25 Si 0.930 3.070 26 H -0.280 1.280 27 H -0.313 1.313 28 H -0.262 1.262 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.417 0.583 35 H 0.188 0.812 36 H 0.201 0.799 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.133 0.867 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.025 0.975 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.937 -3.517 -22.535 29.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.048 3.952 4 H 0.071 0.929 5 C 0.041 3.959 6 H 0.116 0.884 7 N -0.338 5.338 8 C 0.368 3.632 9 O -0.431 6.431 10 C -0.166 4.166 11 C -0.057 4.057 12 C -0.152 4.152 13 C 0.087 3.913 14 O -0.200 6.200 15 C -0.068 4.068 16 N -0.177 5.177 17 N -0.035 5.035 18 C -0.167 4.167 19 C -0.020 4.020 20 N -0.339 5.339 21 C -0.332 4.332 22 H 0.089 0.911 23 C -0.228 4.228 24 N -0.604 5.604 25 Si 0.760 3.240 26 H -0.207 1.207 27 H -0.242 1.242 28 H -0.187 1.187 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.255 0.745 35 H 0.206 0.794 36 H 0.218 0.782 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.151 0.849 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 18.106 -3.169 -22.314 28.909 hybrid contribution 0.615 -0.410 1.095 1.321 sum 18.721 -3.579 -21.219 28.522 Atomic orbital electron populations 1.21831 0.95970 1.00483 1.02322 1.21848 0.96628 0.96692 1.00782 1.21334 0.91694 0.92959 0.89198 0.92873 1.21894 0.94094 0.99106 0.80855 0.88357 1.45751 1.18124 1.56450 1.13453 1.17589 0.81685 0.78687 0.85197 1.90797 1.53341 1.42110 1.56900 1.22563 0.95723 1.02338 0.95972 1.22528 0.94457 0.93428 0.95292 1.21926 1.02283 0.98572 0.92369 1.21978 0.91441 0.90673 0.87229 1.86235 1.44947 1.70587 1.18228 1.23314 0.91377 0.95644 0.96475 1.73128 1.16454 1.21826 1.06254 1.72951 1.26647 1.06676 0.97189 1.23061 0.98569 0.99043 0.96044 1.22017 0.86742 0.97801 0.95435 1.44842 1.01198 1.67130 1.20753 1.18470 0.83895 1.40068 0.90809 0.91120 1.25590 0.97917 1.00918 0.98415 1.69940 1.30389 1.45322 1.14711 0.86135 0.79119 0.79883 0.78826 1.20687 1.24241 1.18694 0.92810 0.92766 0.93500 0.90911 0.93577 0.74539 0.79443 0.78152 0.91938 0.91985 0.84876 0.89406 0.90018 0.93702 0.95725 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.06 71.98 0.65 -4.85 16 2 C -0.12 -4.18 5.45 30.60 0.17 -4.01 16 3 C 0.15 5.62 2.99 45.34 0.14 5.75 16 4 H 0.05 1.92 7.72 -2.39 -0.02 1.90 16 5 C 0.15 4.56 2.84 46.18 0.13 4.69 16 6 H 0.10 3.20 7.26 -2.39 -0.02 3.18 16 7 N -0.69 -18.22 5.17 -439.69 -2.27 -20.49 16 8 C 0.58 15.23 7.81 86.81 0.68 15.91 16 9 O -0.55 -16.79 16.03 -3.86 -0.06 -16.85 16 10 C -0.02 -0.36 6.83 42.00 0.29 -0.07 16 11 C -0.03 -0.45 9.72 22.74 0.22 -0.23 16 12 C -0.12 -1.47 10.14 22.58 0.23 -1.24 16 13 C 0.27 4.54 7.57 84.83 0.64 5.18 16 14 O -0.30 -4.12 10.48 -88.16 -0.92 -5.05 16 15 C 0.03 0.25 10.39 113.37 1.18 1.43 16 16 N -0.32 -6.89 10.40 -170.02 -1.77 -8.66 16 17 N -0.19 -4.39 10.73 -48.50 -0.52 -4.91 16 18 C -0.13 -4.16 6.77 31.99 0.22 -3.94 16 19 C 0.11 4.37 4.78 86.86 0.42 4.78 16 20 N -0.61 -27.86 2.88 -668.25 -1.92 -29.78 16 21 C -0.20 -11.07 7.98 84.03 0.67 -10.40 16 22 H 0.07 4.14 7.12 -2.91 -0.02 4.12 16 23 C -0.03 -1.97 5.44 84.86 0.46 -1.51 16 24 N -0.96 -59.63 13.97 21.65 0.30 -59.33 16 25 Si 0.93 46.70 24.47 68.60 1.68 48.38 16 26 H -0.28 -13.56 7.01 99.48 0.70 -12.87 16 27 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 28 H -0.26 -12.61 6.35 99.48 0.63 -11.97 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 2.45 5.37 -2.39 -0.01 2.44 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.42 10.30 7.72 -92.71 -0.72 9.59 16 35 H 0.19 2.15 7.71 -2.91 -0.02 2.13 16 36 H 0.20 0.84 8.06 -2.91 -0.02 0.81 16 37 H 0.06 0.67 8.11 -2.38 -0.02 0.65 16 38 H 0.06 0.67 8.11 -2.38 -0.02 0.65 16 39 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.04 2.00 7.31 -2.38 -0.02 1.98 16 43 H 0.03 1.07 5.27 -2.39 -0.01 1.06 16 44 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -70.34 357.40 0.83 -69.52 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.23 Total: 15.67 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.08 Total: 11.49 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -6.18 Total: -123.16 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.99 Total: -21.90 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.68 Total: 48.38 kcal Total: -70.34 0.83 -69.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087785206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.878 kcal (2) G-P(sol) polarization free energy of solvation -70.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds