Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47143 * 2 1 4 4 N 1.32163 * 120.53603 * 95.93679 * 3 2 1 5 5 C 1.31855 * 120.96473 * 180.26584 * 4 3 2 6 6 N 1.31880 * 122.09546 * 359.75732 * 5 4 3 7 7 C 1.32129 * 120.96941 * 359.96652 * 6 5 4 8 8 C 1.39928 * 120.53820 * 275.67822 * 3 2 1 9 9 C 1.47833 * 120.93600 * 359.97438 * 8 3 2 10 10 O 1.21552 * 120.00097 * 3.53970 * 9 8 3 11 11 N 1.34778 * 119.99488 * 183.53939 * 9 8 3 12 12 C 1.46504 * 119.99789 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.45690 * 34.99909 * 12 11 9 14 14 C 1.53040 * 109.45960 * 275.02825 * 12 11 9 15 15 C 1.53192 * 109.30928 * 301.36722 * 14 12 11 16 16 N 1.46920 * 108.77034 * 305.34934 * 15 14 12 17 17 C 1.36935 * 120.62930 * 233.60048 * 16 15 14 18 18 H 1.07997 * 120.00463 * 152.21344 * 17 16 15 19 19 C 1.38817 * 119.99767 * 332.20712 * 17 16 15 20 20 N 1.31617 * 120.00269 * 335.77051 * 19 17 16 21 21 Si 1.86806 * 119.99737 * 155.77132 * 19 17 16 22 22 H 1.48504 * 109.47071 * 94.73636 * 21 19 17 23 23 H 1.48497 * 109.46950 * 214.73526 * 21 19 17 24 24 H 1.48500 * 109.46948 * 334.73628 * 21 19 17 25 25 C 1.46923 * 118.73825 * 53.61296 * 16 15 14 26 26 C 1.53036 * 109.46012 * 154.96941 * 12 11 9 27 27 H 1.09004 * 109.49957 * 178.59401 * 26 12 11 28 28 O 1.42900 * 109.50092 * 298.69153 * 26 12 11 29 29 H 1.08999 * 109.47098 * 299.99799 * 1 2 3 30 30 H 1.08997 * 109.47008 * 59.99886 * 1 2 3 31 31 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47562 * 239.99941 * 2 1 3 33 33 H 1.09005 * 109.47342 * 120.00136 * 2 1 3 34 34 H 1.07997 * 118.95009 * 179.71977 * 5 4 3 35 35 H 1.07999 * 120.54061 * 179.97438 * 7 6 5 36 36 H 0.96995 * 120.00621 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.49828 * 61.30707 * 14 12 11 38 38 H 1.09003 * 109.49816 * 181.40684 * 14 12 11 39 39 H 1.09002 * 109.58088 * 185.56309 * 15 14 12 40 40 H 1.09007 * 109.71275 * 65.20548 * 15 14 12 41 41 H 0.96996 * 120.00270 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.58524 * 186.60784 * 25 16 15 43 43 H 1.08993 * 109.70322 * 66.25396 * 25 16 15 44 44 H 0.96702 * 114.00439 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3671 2.0147 1.1322 5 6 2.8027 3.2592 1.1426 6 7 2.9299 3.9663 0.0367 7 6 2.6230 3.4494 -1.1399 8 6 2.1569 2.1309 -1.1993 9 6 1.8009 1.5080 -2.4918 10 8 1.3329 0.3865 -2.5175 11 7 1.9954 2.1837 -3.6417 12 6 1.6421 1.5666 -4.9226 13 1 0.7541 0.9474 -4.7947 14 6 2.8044 0.6971 -5.4074 15 6 4.0592 1.5638 -5.5525 16 7 3.7496 2.7008 -6.4299 17 6 4.5226 2.9647 -7.5290 18 1 4.0919 3.4620 -8.3854 19 6 5.8600 2.5931 -7.5422 20 7 6.5118 2.4397 -6.4091 21 14 6.7348 2.3106 -9.1685 22 1 7.4371 3.5542 -9.5753 23 1 7.7221 1.2121 -9.0151 24 1 5.7405 1.9410 -10.2077 25 6 2.5950 3.5495 -6.1055 26 6 1.3566 2.6606 -5.9540 27 1 1.1181 2.2023 -6.9138 28 8 0.2514 3.4531 -5.5153 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0629 3.7141 2.0869 35 1 2.7294 4.0348 -2.0412 36 1 2.3685 3.0788 -3.6211 37 1 2.9920 -0.0961 -4.6836 38 1 2.5521 0.2575 -6.3724 39 1 4.8631 0.9723 -5.9907 40 1 4.3676 1.9311 -4.5735 41 1 7.4462 2.1797 -6.4184 42 1 2.4327 4.2684 -6.9087 43 1 2.7800 4.0806 -5.1718 44 1 0.0145 4.1679 -6.1220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090819361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = -12.786685 kcal Electronic energy + Delta-G solvation = -28078.757190 eV Core-core repulsion = 24225.005265 eV Total energy + Delta-G solvation = -3853.751925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42566 -39.71422 -38.00143 -35.56466 -35.23508 -34.03999 -33.10561 -31.94958 -31.01872 -29.99277 -28.67758 -25.78248 -25.06982 -25.03693 -22.48500 -22.19080 -21.83540 -21.18683 -18.92794 -18.03107 -17.74070 -17.13662 -16.90501 -16.50949 -15.54022 -15.33144 -14.95901 -14.59131 -14.41551 -14.30887 -14.14072 -13.96989 -13.85142 -13.38086 -13.30509 -12.80791 -12.56692 -12.41494 -12.10739 -11.79440 -11.72426 -11.58662 -11.31353 -11.04121 -10.88272 -10.78148 -10.70638 -10.46027 -10.34497 -10.00305 -9.92686 -9.73245 -9.53357 -9.50975 -9.39245 -8.75173 -8.55641 -6.87739 -5.96236 -3.35639 0.36281 0.89557 2.91846 3.22898 3.29111 3.38286 3.40383 3.71037 3.86207 3.93891 4.23433 4.29329 4.44416 4.66023 4.81962 5.09790 5.17951 5.22041 5.23947 5.35357 5.36616 5.43712 5.48137 5.60234 5.68460 5.84040 5.93651 5.94087 6.05169 6.14288 6.19787 6.30506 6.35092 6.42041 6.54913 6.56806 6.77761 6.78890 7.11911 7.40714 7.64080 7.67345 7.83136 7.87476 8.26418 8.30991 9.02259 9.66582 10.22177 11.12219 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.003782 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.129956 B = 7401.030970 C = 7862.056000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C 0.236 3.764 4 N -0.526 5.526 5 C 0.312 3.688 6 N -0.526 5.526 7 C 0.188 3.812 8 C -0.236 4.236 9 C 0.568 3.432 10 O -0.531 6.531 11 N -0.696 5.696 12 C 0.167 3.833 13 H 0.083 0.917 14 C -0.153 4.153 15 C 0.173 3.827 16 N -0.584 5.584 17 C -0.267 4.267 18 H 0.067 0.933 19 C 0.012 3.988 20 N -0.891 5.891 21 Si 0.897 3.103 22 H -0.287 1.287 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.118 3.882 26 C 0.075 3.925 27 H 0.069 0.931 28 O -0.571 6.571 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.200 0.800 35 H 0.171 0.829 36 H 0.400 0.600 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.022 0.978 41 H 0.255 0.745 42 H 0.061 0.939 43 H 0.020 0.980 44 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 -0.270 9.870 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.122 4.122 3 C 0.089 3.911 4 N -0.240 5.240 5 C 0.025 3.975 6 N -0.240 5.240 7 C 0.021 3.979 8 C -0.244 4.244 9 C 0.353 3.647 10 O -0.410 6.410 11 N -0.347 5.347 12 C 0.063 3.937 13 H 0.101 0.899 14 C -0.193 4.193 15 C 0.047 3.953 16 N -0.309 5.309 17 C -0.396 4.396 18 H 0.084 0.916 19 C -0.189 4.189 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.214 1.214 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.010 4.010 26 C 0.014 3.986 27 H 0.087 0.913 28 O -0.376 6.376 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.216 0.784 35 H 0.188 0.812 36 H 0.237 0.763 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -10.394 -1.090 11.230 15.340 hybrid contribution 0.732 0.557 -2.027 2.226 sum -9.662 -0.532 9.203 13.354 Atomic orbital electron populations 1.21542 0.93287 1.02378 1.01663 1.20866 0.97317 0.89017 1.04997 1.22007 0.86043 0.96584 0.86450 1.68392 1.13922 1.12010 1.29680 1.25194 0.88638 0.86487 0.97176 1.68444 1.17747 1.38691 0.99103 1.23518 0.86684 0.91074 0.96582 1.21689 1.08358 0.97713 0.96630 1.17648 0.78537 0.85499 0.83009 1.90693 1.45085 1.18312 1.86890 1.45861 1.63675 1.19589 1.05571 1.20886 0.98192 0.93448 0.81153 0.89879 1.22577 0.97351 0.98514 1.00835 1.20714 0.93151 0.87968 0.93486 1.44003 1.29589 1.27728 1.29540 1.19084 0.90326 1.38275 0.91950 0.91561 1.24987 0.95851 1.01427 0.96595 1.70118 1.09228 1.49117 1.24827 0.86395 0.79336 0.77842 0.83887 1.21363 1.21430 1.20259 1.21537 0.88019 0.92859 0.98537 1.22754 0.87145 0.92444 0.96255 0.91324 1.86473 1.51288 1.48086 1.51725 0.93415 0.91876 0.91715 0.86644 0.90378 0.78377 0.81191 0.76301 0.91667 0.91159 0.90063 0.96024 0.93467 0.92098 0.96217 0.77835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.53 37.15 0.35 -1.16 16 2 C -0.08 -1.06 5.49 -27.88 -0.15 -1.21 16 3 C 0.24 3.25 6.12 -81.81 -0.50 2.75 16 4 N -0.53 -6.88 10.36 -10.48 -0.11 -6.99 16 5 C 0.31 3.66 12.27 -92.03 -1.13 2.53 16 6 N -0.53 -6.89 10.42 -14.25 -0.15 -7.04 16 7 C 0.19 2.49 10.81 -16.78 -0.18 2.31 16 8 C -0.24 -3.35 5.91 -104.69 -0.62 -3.97 16 9 C 0.57 8.83 7.71 -12.33 -0.10 8.74 16 10 O -0.53 -8.98 11.79 5.32 0.06 -8.91 16 11 N -0.70 -10.74 4.11 -54.71 -0.23 -10.97 16 12 C 0.17 2.74 2.47 -67.89 -0.17 2.57 16 13 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 14 C -0.15 -2.76 5.77 -26.61 -0.15 -2.91 16 15 C 0.17 3.78 5.10 -3.71 -0.02 3.76 16 16 N -0.58 -13.18 2.99 -172.32 -0.51 -13.69 16 17 C -0.27 -6.82 9.53 -15.06 -0.14 -6.96 16 18 H 0.07 1.66 7.94 -52.49 -0.42 1.24 16 19 C 0.01 0.31 4.71 -17.43 -0.08 0.23 16 20 N -0.89 -24.65 11.67 55.49 0.65 -24.00 16 21 Si 0.90 20.61 29.62 -169.99 -5.03 15.58 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.12 2.13 5.84 -3.71 -0.02 2.11 16 26 C 0.07 1.16 3.36 -26.61 -0.09 1.08 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 O -0.57 -7.81 13.21 -35.23 -0.47 -8.28 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.84 7.04 -51.93 -0.37 0.47 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.12 1.61 5.83 -51.93 -0.30 1.31 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.17 1.97 6.56 -52.49 -0.34 1.63 16 36 H 0.40 5.95 5.02 -40.82 -0.20 5.75 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 2.04 6.28 -51.93 -0.33 1.71 16 40 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.02 0.36 6.64 -51.93 -0.35 0.02 16 44 H 0.38 3.61 9.08 45.56 0.41 4.02 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -30.29 352.98 -8.66 -38.95 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.19 Total: 10.18 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -3.00 Total: 9.85 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.35 Total: -62.69 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.40 Total: -17.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.29 -8.66 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090819361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.165 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds