Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47143 * 2 1 4 4 N 1.32163 * 120.53603 * 95.93679 * 3 2 1 5 5 C 1.31855 * 120.96473 * 180.26584 * 4 3 2 6 6 N 1.31880 * 122.09546 * 359.75732 * 5 4 3 7 7 C 1.32129 * 120.96941 * 359.96652 * 6 5 4 8 8 C 1.39928 * 120.53820 * 275.67822 * 3 2 1 9 9 C 1.47833 * 120.93600 * 359.97438 * 8 3 2 10 10 O 1.21552 * 120.00097 * 3.53970 * 9 8 3 11 11 N 1.34778 * 119.99488 * 183.53939 * 9 8 3 12 12 C 1.46504 * 119.99789 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.45690 * 34.99909 * 12 11 9 14 14 C 1.53040 * 109.45960 * 275.02825 * 12 11 9 15 15 C 1.53192 * 109.30928 * 301.36722 * 14 12 11 16 16 N 1.46920 * 108.77034 * 305.34934 * 15 14 12 17 17 C 1.36935 * 120.62930 * 233.60048 * 16 15 14 18 18 H 1.07997 * 120.00463 * 152.21344 * 17 16 15 19 19 C 1.38817 * 119.99767 * 332.20712 * 17 16 15 20 20 N 1.31617 * 120.00269 * 335.77051 * 19 17 16 21 21 Si 1.86806 * 119.99737 * 155.77132 * 19 17 16 22 22 H 1.48504 * 109.47071 * 94.73636 * 21 19 17 23 23 H 1.48497 * 109.46950 * 214.73526 * 21 19 17 24 24 H 1.48500 * 109.46948 * 334.73628 * 21 19 17 25 25 C 1.46923 * 118.73825 * 53.61296 * 16 15 14 26 26 C 1.53036 * 109.46012 * 154.96941 * 12 11 9 27 27 H 1.09004 * 109.49957 * 178.59401 * 26 12 11 28 28 O 1.42900 * 109.50092 * 298.69153 * 26 12 11 29 29 H 1.08999 * 109.47098 * 299.99799 * 1 2 3 30 30 H 1.08997 * 109.47008 * 59.99886 * 1 2 3 31 31 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47562 * 239.99941 * 2 1 3 33 33 H 1.09005 * 109.47342 * 120.00136 * 2 1 3 34 34 H 1.07997 * 118.95009 * 179.71977 * 5 4 3 35 35 H 1.07999 * 120.54061 * 179.97438 * 7 6 5 36 36 H 0.96995 * 120.00621 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.49828 * 61.30707 * 14 12 11 38 38 H 1.09003 * 109.49816 * 181.40684 * 14 12 11 39 39 H 1.09002 * 109.58088 * 185.56309 * 15 14 12 40 40 H 1.09007 * 109.71275 * 65.20548 * 15 14 12 41 41 H 0.96996 * 120.00270 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.58524 * 186.60784 * 25 16 15 43 43 H 1.08993 * 109.70322 * 66.25396 * 25 16 15 44 44 H 0.96702 * 114.00439 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3671 2.0147 1.1322 5 6 2.8027 3.2592 1.1426 6 7 2.9299 3.9663 0.0367 7 6 2.6230 3.4494 -1.1399 8 6 2.1569 2.1309 -1.1993 9 6 1.8009 1.5080 -2.4918 10 8 1.3329 0.3865 -2.5175 11 7 1.9954 2.1837 -3.6417 12 6 1.6421 1.5666 -4.9226 13 1 0.7541 0.9474 -4.7947 14 6 2.8044 0.6971 -5.4074 15 6 4.0592 1.5638 -5.5525 16 7 3.7496 2.7008 -6.4299 17 6 4.5226 2.9647 -7.5290 18 1 4.0919 3.4620 -8.3854 19 6 5.8600 2.5931 -7.5422 20 7 6.5118 2.4397 -6.4091 21 14 6.7348 2.3106 -9.1685 22 1 7.4371 3.5542 -9.5753 23 1 7.7221 1.2121 -9.0151 24 1 5.7405 1.9410 -10.2077 25 6 2.5950 3.5495 -6.1055 26 6 1.3566 2.6606 -5.9540 27 1 1.1181 2.2023 -6.9138 28 8 0.2514 3.4531 -5.5153 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0629 3.7141 2.0869 35 1 2.7294 4.0348 -2.0412 36 1 2.3685 3.0788 -3.6211 37 1 2.9920 -0.0961 -4.6836 38 1 2.5521 0.2575 -6.3724 39 1 4.8631 0.9723 -5.9907 40 1 4.3676 1.9311 -4.5735 41 1 7.4462 2.1797 -6.4184 42 1 2.4327 4.2684 -6.9087 43 1 2.7800 4.0806 -5.1718 44 1 0.0145 4.1679 -6.1220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090819361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = -33.818296 kcal Electronic energy + Delta-G solvation = -28079.669189 eV Core-core repulsion = 24225.005265 eV Total energy + Delta-G solvation = -3854.663924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.47255 -40.98098 -39.32086 -36.92593 -36.37298 -35.39432 -34.21816 -33.49174 -32.33745 -31.37843 -30.13723 -27.33499 -26.34354 -26.04474 -23.99877 -23.68118 -22.93915 -22.44022 -20.36819 -19.21653 -18.98145 -18.49288 -17.95812 -17.86358 -16.88444 -16.69478 -16.49905 -15.93436 -15.79492 -15.65655 -15.37103 -15.16410 -14.93044 -14.85045 -14.39131 -14.36468 -13.84120 -13.55131 -13.52334 -13.28086 -13.04913 -12.77820 -12.68497 -12.54589 -12.37324 -12.21004 -12.09998 -11.97261 -11.81900 -11.70660 -11.26151 -11.04103 -10.79522 -10.69712 -10.47905 -10.41337 -10.03991 -8.73571 -7.92617 -5.33139 -0.66155 -0.13485 1.45842 1.50573 1.58845 1.76149 2.02671 2.49702 2.67226 2.90455 3.00571 3.15681 3.22940 3.24001 3.57902 3.65119 3.73330 3.91774 4.07013 4.18530 4.25070 4.27731 4.38176 4.40272 4.47526 4.52013 4.67151 4.76102 4.87057 4.94982 5.01328 5.04046 5.11596 5.14147 5.23030 5.31748 5.36766 5.49993 5.61544 5.68103 5.76810 6.33168 6.41739 6.88318 6.89567 7.09218 7.10782 7.80858 8.32269 9.13729 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.003782 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.129956 B = 7401.030970 C = 7862.056000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 C 0.230 3.770 4 N -0.533 5.533 5 C 0.315 3.685 6 N -0.538 5.538 7 C 0.189 3.811 8 C -0.252 4.252 9 C 0.568 3.432 10 O -0.547 6.547 11 N -0.695 5.695 12 C 0.171 3.829 13 H 0.085 0.915 14 C -0.139 4.139 15 C 0.185 3.815 16 N -0.599 5.599 17 C -0.269 4.269 18 H 0.071 0.929 19 C -0.040 4.040 20 N -0.925 5.925 21 Si 0.955 3.045 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.268 1.268 25 C 0.116 3.884 26 C 0.095 3.905 27 H 0.074 0.926 28 O -0.570 6.570 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.238 0.762 35 H 0.182 0.818 36 H 0.403 0.597 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.003 0.997 41 H 0.249 0.751 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.902 0.349 10.222 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.120 4.120 3 C 0.083 3.917 4 N -0.247 5.247 5 C 0.030 3.970 6 N -0.251 5.251 7 C 0.022 3.978 8 C -0.260 4.260 9 C 0.354 3.646 10 O -0.427 6.427 11 N -0.346 5.346 12 C 0.066 3.934 13 H 0.103 0.897 14 C -0.179 4.179 15 C 0.059 3.941 16 N -0.324 5.324 17 C -0.398 4.398 18 H 0.089 0.911 19 C -0.236 4.236 20 N -0.570 5.570 21 Si 0.784 3.216 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.193 1.193 25 C -0.010 4.010 26 C 0.034 3.966 27 H 0.091 0.909 28 O -0.378 6.378 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.253 0.747 35 H 0.199 0.801 36 H 0.240 0.760 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.823 -0.440 11.572 16.550 hybrid contribution 1.114 0.436 -2.064 2.386 sum -10.709 -0.004 9.508 14.321 Atomic orbital electron populations 1.21479 0.92515 1.03114 1.01010 1.20847 0.97896 0.88479 1.04781 1.22234 0.85761 0.97085 0.86623 1.68480 1.14430 1.12643 1.29176 1.25993 0.86897 0.85985 0.98170 1.68533 1.18264 1.38987 0.99353 1.23722 0.85964 0.90814 0.97281 1.21598 1.09953 0.98330 0.96100 1.17849 0.78042 0.85277 0.83430 1.90685 1.45813 1.18985 1.87195 1.45808 1.63780 1.19664 1.05335 1.20769 0.97172 0.93679 0.81754 0.89695 1.22371 0.96279 0.98057 1.01158 1.20436 0.93752 0.87961 0.91971 1.44166 1.30328 1.28753 1.29128 1.19434 0.90536 1.36908 0.92955 0.91111 1.25653 0.96756 1.02213 0.99021 1.70238 1.09092 1.51086 1.26601 0.85463 0.78177 0.77149 0.80842 1.21382 1.22318 1.19266 1.21692 0.87383 0.92989 0.98904 1.22347 0.86482 0.91704 0.96051 0.90865 1.86450 1.49987 1.48790 1.52537 0.92655 0.93763 0.90327 0.88274 0.89055 0.74651 0.80143 0.76004 0.91835 0.90753 0.93773 0.97858 0.94174 0.91309 0.95822 0.75431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.53 71.98 0.69 -2.04 16 2 C -0.08 -2.01 5.49 29.85 0.16 -1.84 16 3 C 0.23 6.13 6.12 42.92 0.26 6.39 16 4 N -0.53 -13.09 10.36 -187.06 -1.94 -15.03 16 5 C 0.32 6.74 12.27 180.84 2.22 8.96 16 6 N -0.54 -13.25 10.42 -198.98 -2.07 -15.32 16 7 C 0.19 4.84 10.81 85.07 0.92 5.75 16 8 C -0.25 -7.02 5.91 -19.91 -0.12 -7.14 16 9 C 0.57 17.48 7.71 86.78 0.67 18.15 16 10 O -0.55 -18.41 11.79 -3.88 -0.05 -18.46 16 11 N -0.70 -20.98 4.11 -445.28 -1.83 -22.81 16 12 C 0.17 5.39 2.47 45.02 0.11 5.50 16 13 H 0.09 2.72 7.58 -2.38 -0.02 2.71 16 14 C -0.14 -4.98 5.77 30.67 0.18 -4.80 16 15 C 0.18 8.23 5.10 86.36 0.44 8.67 16 16 N -0.60 -26.87 2.99 -699.11 -2.09 -28.95 16 17 C -0.27 -13.62 9.53 84.04 0.80 -12.82 16 18 H 0.07 3.47 7.94 -2.91 -0.02 3.44 16 19 C -0.04 -2.10 4.71 84.86 0.40 -1.70 16 20 N -0.93 -52.53 11.67 21.65 0.25 -52.27 16 21 Si 0.96 42.77 29.62 68.60 2.03 44.80 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 C 0.12 4.05 5.84 86.36 0.50 4.55 16 26 C 0.10 2.77 3.36 30.67 0.10 2.87 16 27 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 28 O -0.57 -13.95 13.21 -148.98 -1.97 -15.92 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 1.14 7.04 -2.39 -0.02 1.13 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 2.77 5.83 -2.39 -0.01 2.76 16 33 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.24 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.18 4.05 6.56 -2.91 -0.02 4.03 16 36 H 0.40 11.66 5.02 -92.71 -0.47 11.20 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.04 2.29 6.28 -2.39 -0.01 2.27 16 40 H 0.00 0.16 7.74 -2.38 -0.02 0.14 16 41 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.07 2.27 7.93 -2.39 -0.02 2.25 16 43 H 0.02 0.82 6.64 -2.39 -0.02 0.81 16 44 H 0.40 6.26 9.08 -74.06 -0.67 5.59 16 Total: -1.00 -64.88 352.98 -0.41 -65.29 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.09 Total: 28.17 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: 7.34 Total: 30.52 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -7.68 Total: -134.39 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -2.01 Total: -34.38 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -64.88 -0.41 -65.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090819361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.468 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds