Wall clock time and date at job start Tue Mar 31 2020 04:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31909 * 119.03944 * 2 1 4 4 C 1.32176 * 121.03393 * 179.97438 * 3 2 1 5 5 C 1.38808 * 119.14686 * 359.97438 * 4 3 2 6 6 C 1.39495 * 118.26254 * 0.02562 * 5 4 3 7 7 C 1.48446 * 120.54833 * 180.02562 * 6 5 4 8 8 O 1.21485 * 120.00408 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99842 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00081 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47231 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.55365 * 304.87595 * 11 10 9 13 13 C 1.53297 * 109.51212 * 184.74670 * 11 10 9 14 14 N 1.47162 * 108.41323 * 187.79657 * 13 11 10 15 15 C 1.36936 * 120.99426 * 230.54566 * 14 13 11 16 16 H 1.07993 * 120.00254 * 153.33118 * 15 14 13 17 17 C 1.38816 * 119.99594 * 333.33831 * 15 14 13 18 18 N 1.31616 * 120.00208 * 343.51894 * 17 15 14 19 19 Si 1.86797 * 119.99898 * 163.52381 * 17 15 14 20 20 H 1.48494 * 109.47385 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47024 * 119.99750 * 19 17 15 22 22 H 1.48498 * 109.47173 * 239.99607 * 19 17 15 23 23 C 1.47156 * 118.02918 * 50.46999 * 14 13 11 24 24 C 1.53293 * 108.41370 * 309.52999 * 23 14 13 25 25 O 1.42958 * 109.51241 * 65.00012 * 11 10 9 26 26 N 1.31560 * 119.04459 * 180.27755 * 2 1 3 27 27 H 1.09001 * 109.47148 * 90.00106 * 1 2 3 28 28 H 1.09004 * 109.47143 * 209.99900 * 1 2 3 29 29 H 1.09000 * 109.47360 * 329.99713 * 1 2 3 30 30 H 1.08004 * 120.43029 * 180.02562 * 4 3 2 31 31 H 1.07996 * 120.86590 * 180.02562 * 5 4 3 32 32 H 0.97002 * 120.00226 * 0.02562 * 9 7 6 33 33 H 1.09003 * 109.46715 * 59.99830 * 10 9 7 34 34 H 1.09005 * 109.47180 * 300.00240 * 10 9 7 35 35 H 1.09004 * 109.47102 * 180.12966 * 12 11 10 36 36 H 1.09008 * 109.47205 * 300.12363 * 12 11 10 37 37 H 1.08994 * 109.47524 * 60.12736 * 12 11 10 38 38 H 1.09001 * 109.67946 * 307.50120 * 13 11 10 39 39 H 1.08998 * 109.68018 * 68.04820 * 13 11 10 40 40 H 0.96998 * 120.00577 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.68193 * 189.79012 * 23 14 13 42 42 H 1.09004 * 109.68072 * 69.27006 * 23 14 13 43 43 H 1.09003 * 109.51304 * 172.20459 * 24 23 14 44 44 H 1.08999 * 109.51286 * 292.30582 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4683 1.1993 0.0005 5 6 4.1861 0.0112 0.0016 6 6 3.4761 -1.1895 0.0015 7 6 4.1925 -2.4897 0.0032 8 8 5.4071 -2.5140 0.0042 9 7 3.4954 -3.6432 0.0027 10 6 4.2024 -4.9263 0.0038 11 6 3.1851 -6.0692 0.0035 12 6 2.2280 -5.9030 1.1854 13 6 3.9201 -7.4090 0.1242 14 7 2.9440 -8.4936 -0.0669 15 6 2.8541 -9.5269 0.8271 16 1 1.9213 -10.0579 0.9468 17 6 3.9620 -9.8919 1.5797 18 7 5.1623 -9.4862 1.2233 19 14 3.7493 -10.9588 3.0982 20 1 2.3106 -11.2777 3.2815 21 1 4.5184 -12.2180 2.9300 22 1 4.2498 -10.2285 4.2904 23 6 2.0660 -8.4339 -1.2463 24 6 1.4214 -7.0442 -1.3003 25 8 2.4432 -6.0477 -1.2184 26 7 2.1457 -1.1501 -0.0056 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 3.9826 2.1490 0.0009 31 1 5.2661 0.0164 0.0024 32 1 2.5256 -3.6238 0.0008 33 1 4.8268 -4.9963 0.8945 34 1 4.8289 -4.9968 -0.8855 35 1 1.5053 -6.7190 1.1852 36 1 2.7943 -5.9195 2.1167 37 1 1.7024 -4.9523 1.0965 38 1 4.6940 -7.4733 -0.6407 39 1 4.3724 -7.4918 1.1125 40 1 5.9365 -9.7415 1.7490 41 1 1.2904 -9.1954 -1.1655 42 1 2.6527 -8.6018 -2.1495 43 1 0.8772 -6.9314 -2.2380 44 1 0.7324 -6.9297 -0.4634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108403406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:00 Heat of formation + Delta-G solvation = -1.380701 kcal Electronic energy + Delta-G solvation = -27350.238564 eV Core-core repulsion = 23496.981240 eV Total energy + Delta-G solvation = -3853.257325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49087 -39.68147 -38.72293 -35.10829 -34.40511 -34.11387 -33.50376 -31.67867 -31.26722 -28.79907 -27.97281 -27.03340 -26.07867 -24.87595 -23.28213 -23.18462 -21.36938 -20.68267 -18.91118 -18.30222 -17.80215 -17.00079 -15.98547 -15.83429 -15.75833 -15.46852 -15.28766 -15.00993 -14.63386 -14.35200 -14.05852 -13.81822 -13.69430 -13.51291 -13.05884 -12.99547 -12.75547 -12.69920 -12.50762 -11.97336 -11.59696 -11.27343 -11.20892 -11.09990 -11.04279 -10.85693 -10.68276 -10.49202 -10.32344 -10.24915 -10.00031 -9.81708 -9.62365 -9.51964 -9.06736 -8.93660 -8.56370 -6.75794 -5.86793 -3.30494 0.25365 0.60630 2.65145 2.94710 3.31946 3.40247 3.41854 3.54428 3.55665 3.72481 4.21718 4.37847 4.42065 4.60057 4.69170 5.09672 5.10310 5.13526 5.24642 5.31937 5.43557 5.46655 5.51679 5.58940 5.66721 5.90920 5.92022 5.96293 6.00861 6.04381 6.12171 6.26887 6.41079 6.47856 6.55982 6.63520 6.73797 6.81090 7.04828 7.43275 7.47973 7.69333 7.71028 7.86504 8.12178 8.30910 9.08629 9.71593 10.28936 11.21272 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.003033 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.439125 B = 9230.692093 C = 9673.760568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.316 3.684 3 N -0.509 5.509 4 C 0.152 3.848 5 C -0.180 4.180 6 C 0.142 3.858 7 C 0.562 3.438 8 O -0.529 6.529 9 N -0.690 5.690 10 C 0.136 3.864 11 C 0.078 3.922 12 C -0.163 4.163 13 C 0.161 3.839 14 N -0.591 5.591 15 C -0.253 4.253 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.288 1.288 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 N -0.494 5.494 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.177 0.823 31 H 0.161 0.839 32 H 0.414 0.586 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.030 0.970 39 H 0.097 0.903 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.026 0.974 43 H 0.080 0.920 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 18.886 -2.288 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.224 5.224 4 C -0.015 4.015 5 C -0.202 4.202 6 C -0.006 4.006 7 C 0.345 3.655 8 O -0.405 6.405 9 N -0.341 5.341 10 C 0.012 3.988 11 C 0.037 3.963 12 C -0.221 4.221 13 C 0.034 3.966 14 N -0.314 5.314 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.303 6.303 26 N -0.211 5.211 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.194 0.806 31 H 0.179 0.821 32 H 0.251 0.749 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.098 0.902 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.236 18.832 -2.354 20.311 hybrid contribution 0.509 -0.769 0.906 1.293 sum -6.727 18.063 -1.448 19.329 Atomic orbital electron populations 1.20611 0.85164 1.04469 1.04192 1.23283 0.98362 0.82951 0.90558 1.68213 1.10483 1.30436 1.13302 1.23355 0.89422 0.98656 0.90069 1.22981 1.03988 0.92961 1.00311 1.21757 0.89798 0.94991 0.94052 1.17793 0.86619 0.82999 0.78121 1.90807 1.12581 1.86864 1.50225 1.45922 1.11612 1.05112 1.71452 1.21499 0.94253 0.79685 1.03328 1.22547 0.92134 0.96970 0.84656 1.22214 1.00527 1.01027 0.98292 1.21286 0.90093 0.82320 1.02918 1.43997 1.40925 1.23218 1.23286 1.19195 0.94902 1.09718 1.14451 0.91374 1.25052 0.94890 0.98992 1.00605 1.70014 0.97287 1.48589 1.38657 0.86220 0.77624 0.79866 0.83053 1.20242 1.21640 1.21471 1.21603 0.94441 0.94658 0.91025 1.23039 0.89914 0.89819 1.00399 1.87828 1.49650 1.54979 1.37871 1.68220 1.08799 1.31138 1.12988 0.89351 0.89254 0.89450 0.80605 0.82099 0.74886 0.89524 0.90331 0.90673 0.91863 0.93765 0.95189 0.88537 0.93470 0.92021 0.95634 0.90155 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.31 36.01 0.37 -0.26 16 2 C 0.32 3.41 7.64 -157.30 -1.20 2.21 16 3 N -0.51 -5.30 10.32 -10.73 -0.11 -5.41 16 4 C 0.15 1.33 11.31 -17.19 -0.19 1.13 16 5 C -0.18 -1.87 9.72 -38.90 -0.38 -2.25 16 6 C 0.14 1.85 6.79 -82.64 -0.56 1.29 16 7 C 0.56 8.63 7.83 -12.05 -0.09 8.54 16 8 O -0.53 -9.38 16.43 5.38 0.09 -9.29 16 9 N -0.69 -10.52 5.19 -61.05 -0.32 -10.84 16 10 C 0.14 2.32 4.85 -4.04 -0.02 2.30 16 11 C 0.08 1.45 0.78 -90.47 -0.07 1.38 16 12 C -0.16 -2.80 7.86 37.15 0.29 -2.51 16 13 C 0.16 3.69 4.11 -3.53 -0.01 3.68 16 14 N -0.59 -14.24 2.57 -171.82 -0.44 -14.68 16 15 C -0.25 -6.67 9.65 -15.06 -0.15 -6.82 16 16 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 18 N -0.90 -25.41 11.14 55.49 0.62 -24.79 16 19 Si 0.90 21.10 29.58 -169.99 -5.03 16.07 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.11 2.22 6.73 -3.53 -0.02 2.20 16 24 C 0.05 0.80 6.60 37.31 0.25 1.04 16 25 O -0.38 -7.13 10.17 -35.23 -0.36 -7.49 16 26 N -0.49 -6.14 9.60 -7.33 -0.07 -6.21 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.18 0.84 8.06 -52.48 -0.42 0.41 16 31 H 0.16 1.48 7.74 -52.49 -0.41 1.07 16 32 H 0.41 5.99 6.39 -40.82 -0.26 5.73 16 33 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.40 6.12 -51.93 -0.32 1.08 16 36 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 37 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 2.45 6.16 -51.93 -0.32 2.13 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.81 6.26 -51.93 -0.32 0.49 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -31.46 360.18 -8.23 -39.69 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.16 Total: 5.58 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -1.88 Total: 11.94 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.32 Total: -61.94 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.27 Total: -16.77 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.46 -8.23 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108403406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.307 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds