Wall clock time and date at job start Tue Mar 31 2020 04:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31909 * 119.03944 * 2 1 4 4 C 1.32176 * 121.03393 * 179.97438 * 3 2 1 5 5 C 1.38808 * 119.14686 * 359.97438 * 4 3 2 6 6 C 1.39495 * 118.26254 * 0.02562 * 5 4 3 7 7 C 1.48446 * 120.54833 * 180.02562 * 6 5 4 8 8 O 1.21485 * 120.00408 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99842 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00081 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47231 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.55365 * 304.87595 * 11 10 9 13 13 C 1.53297 * 109.51212 * 184.74670 * 11 10 9 14 14 N 1.47162 * 108.41323 * 187.79657 * 13 11 10 15 15 C 1.36936 * 120.99426 * 230.54566 * 14 13 11 16 16 H 1.07993 * 120.00254 * 153.33118 * 15 14 13 17 17 C 1.38816 * 119.99594 * 333.33831 * 15 14 13 18 18 N 1.31616 * 120.00208 * 343.51894 * 17 15 14 19 19 Si 1.86797 * 119.99898 * 163.52381 * 17 15 14 20 20 H 1.48494 * 109.47385 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47024 * 119.99750 * 19 17 15 22 22 H 1.48498 * 109.47173 * 239.99607 * 19 17 15 23 23 C 1.47156 * 118.02918 * 50.46999 * 14 13 11 24 24 C 1.53293 * 108.41370 * 309.52999 * 23 14 13 25 25 O 1.42958 * 109.51241 * 65.00012 * 11 10 9 26 26 N 1.31560 * 119.04459 * 180.27755 * 2 1 3 27 27 H 1.09001 * 109.47148 * 90.00106 * 1 2 3 28 28 H 1.09004 * 109.47143 * 209.99900 * 1 2 3 29 29 H 1.09000 * 109.47360 * 329.99713 * 1 2 3 30 30 H 1.08004 * 120.43029 * 180.02562 * 4 3 2 31 31 H 1.07996 * 120.86590 * 180.02562 * 5 4 3 32 32 H 0.97002 * 120.00226 * 0.02562 * 9 7 6 33 33 H 1.09003 * 109.46715 * 59.99830 * 10 9 7 34 34 H 1.09005 * 109.47180 * 300.00240 * 10 9 7 35 35 H 1.09004 * 109.47102 * 180.12966 * 12 11 10 36 36 H 1.09008 * 109.47205 * 300.12363 * 12 11 10 37 37 H 1.08994 * 109.47524 * 60.12736 * 12 11 10 38 38 H 1.09001 * 109.67946 * 307.50120 * 13 11 10 39 39 H 1.08998 * 109.68018 * 68.04820 * 13 11 10 40 40 H 0.96998 * 120.00577 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.68193 * 189.79012 * 23 14 13 42 42 H 1.09004 * 109.68072 * 69.27006 * 23 14 13 43 43 H 1.09003 * 109.51304 * 172.20459 * 24 23 14 44 44 H 1.08999 * 109.51286 * 292.30582 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4683 1.1993 0.0005 5 6 4.1861 0.0112 0.0016 6 6 3.4761 -1.1895 0.0015 7 6 4.1925 -2.4897 0.0032 8 8 5.4071 -2.5140 0.0042 9 7 3.4954 -3.6432 0.0027 10 6 4.2024 -4.9263 0.0038 11 6 3.1851 -6.0692 0.0035 12 6 2.2280 -5.9030 1.1854 13 6 3.9201 -7.4090 0.1242 14 7 2.9440 -8.4936 -0.0669 15 6 2.8541 -9.5269 0.8271 16 1 1.9213 -10.0579 0.9468 17 6 3.9620 -9.8919 1.5797 18 7 5.1623 -9.4862 1.2233 19 14 3.7493 -10.9588 3.0982 20 1 2.3106 -11.2777 3.2815 21 1 4.5184 -12.2180 2.9300 22 1 4.2498 -10.2285 4.2904 23 6 2.0660 -8.4339 -1.2463 24 6 1.4214 -7.0442 -1.3003 25 8 2.4432 -6.0477 -1.2184 26 7 2.1457 -1.1501 -0.0056 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 3.9826 2.1490 0.0009 31 1 5.2661 0.0164 0.0024 32 1 2.5256 -3.6238 0.0008 33 1 4.8268 -4.9963 0.8945 34 1 4.8289 -4.9968 -0.8855 35 1 1.5053 -6.7190 1.1852 36 1 2.7943 -5.9195 2.1167 37 1 1.7024 -4.9523 1.0965 38 1 4.6940 -7.4733 -0.6407 39 1 4.3724 -7.4918 1.1125 40 1 5.9365 -9.7415 1.7490 41 1 1.2904 -9.1954 -1.1655 42 1 2.6527 -8.6018 -2.1495 43 1 0.8772 -6.9314 -2.2380 44 1 0.7324 -6.9297 -0.4634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108403406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:59 Heat of formation + Delta-G solvation = -23.151058 kcal Electronic energy + Delta-G solvation = -27351.182598 eV Core-core repulsion = 23496.981240 eV Total energy + Delta-G solvation = -3854.201358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.34672 -41.04469 -40.12039 -36.63453 -36.04481 -35.01523 -34.25888 -33.24518 -33.06390 -29.59955 -29.46392 -28.34455 -27.78872 -26.03238 -24.99206 -24.06327 -22.90094 -21.90514 -20.40744 -19.47606 -18.98193 -18.54225 -17.46264 -17.05816 -16.83181 -16.70148 -16.51585 -16.19023 -15.97326 -15.74776 -15.58294 -15.25793 -15.16098 -14.68157 -14.45297 -14.34739 -14.04734 -13.55757 -13.41089 -13.21442 -13.18772 -12.94332 -12.81570 -12.55867 -12.43569 -12.11988 -12.05700 -11.96864 -11.95637 -11.87471 -11.67206 -11.13523 -10.77995 -10.60911 -10.51230 -10.43699 -10.25138 -8.71446 -7.89659 -5.36679 -0.65060 -0.13478 1.45304 1.48021 1.56893 1.57773 1.79315 2.47654 2.68117 2.69925 2.78083 3.01739 3.24878 3.46818 3.50613 3.71232 3.89077 3.98234 3.99787 4.08351 4.39816 4.40575 4.44390 4.48737 4.52580 4.59780 4.69883 4.74839 4.75471 4.84865 4.94754 5.01785 5.03651 5.09778 5.19101 5.20462 5.33576 5.34908 5.52700 5.62095 5.72212 6.29298 6.30421 6.36247 6.85159 6.95462 7.07214 7.75977 8.30339 9.16285 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.003033 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.439125 B = 9230.692093 C = 9673.760568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.306 3.694 3 N -0.516 5.516 4 C 0.165 3.835 5 C -0.178 4.178 6 C 0.119 3.881 7 C 0.563 3.437 8 O -0.559 6.559 9 N -0.684 5.684 10 C 0.145 3.855 11 C 0.093 3.907 12 C -0.153 4.153 13 C 0.169 3.831 14 N -0.607 5.607 15 C -0.258 4.258 16 H 0.073 0.927 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.264 1.264 21 H -0.295 1.295 22 H -0.290 1.290 23 C 0.103 3.897 24 C 0.052 3.948 25 O -0.387 6.387 26 N -0.509 5.509 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.220 0.780 31 H 0.170 0.830 32 H 0.419 0.581 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.072 0.928 38 H -0.005 1.005 39 H 0.068 0.932 40 H 0.250 0.750 41 H 0.073 0.927 42 H 0.013 0.987 43 H 0.117 0.883 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 20.963 -2.150 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 N -0.231 5.231 4 C -0.003 4.003 5 C -0.201 4.201 6 C -0.028 4.028 7 C 0.347 3.653 8 O -0.437 6.437 9 N -0.335 5.335 10 C 0.021 3.979 11 C 0.052 3.948 12 C -0.211 4.211 13 C 0.043 3.957 14 N -0.331 5.331 15 C -0.388 4.388 16 H 0.091 0.909 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.794 3.206 20 H -0.188 1.188 21 H -0.222 1.222 22 H -0.217 1.217 23 C -0.023 4.023 24 C -0.025 4.025 25 O -0.307 6.307 26 N -0.227 5.227 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.236 0.764 31 H 0.188 0.812 32 H 0.258 0.742 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.013 0.987 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.031 0.969 43 H 0.135 0.865 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.483 20.913 -2.233 23.071 hybrid contribution 1.171 -1.372 0.778 1.964 sum -8.312 19.541 -1.454 21.285 Atomic orbital electron populations 1.20734 0.83029 1.05331 1.05154 1.23916 0.99720 0.82613 0.89884 1.68338 1.11241 1.30157 1.13352 1.24046 0.88914 0.99587 0.87718 1.23184 1.04563 0.92686 0.99688 1.21468 0.90500 0.94286 0.96540 1.18170 0.86383 0.83766 0.76961 1.90783 1.13939 1.87456 1.51523 1.45758 1.11694 1.04441 1.71627 1.21209 0.93770 0.80476 1.02484 1.22206 0.92250 0.94746 0.85638 1.22105 0.99807 1.02040 0.97102 1.21038 0.89855 0.84804 1.00049 1.44250 1.41337 1.23172 1.24374 1.19526 0.94911 1.09784 1.14540 0.90896 1.25791 0.94655 1.00746 1.03285 1.70175 0.97891 1.50311 1.39768 0.85226 0.77975 0.77811 0.79562 1.18796 1.22223 1.21712 1.21809 0.94035 0.97396 0.89026 1.23117 0.89383 0.87177 1.02837 1.87838 1.49951 1.55181 1.37692 1.68181 1.08462 1.32176 1.13895 0.88202 0.88874 0.88085 0.76404 0.81205 0.74225 0.90113 0.91672 0.91751 0.92425 0.90936 0.98651 0.91338 0.94043 0.90907 0.96887 0.86535 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.31 71.24 0.73 -0.30 16 2 C 0.31 5.94 7.64 138.79 1.06 7.00 16 3 N -0.52 -9.32 10.32 -187.86 -1.94 -11.26 16 4 C 0.17 2.38 11.31 84.78 0.96 3.34 16 5 C -0.18 -3.40 9.72 22.71 0.22 -3.18 16 6 C 0.12 2.97 6.79 41.98 0.29 3.26 16 7 C 0.56 17.25 7.83 86.96 0.68 17.93 16 8 O -0.56 -20.12 16.43 -3.67 -0.06 -20.18 16 9 N -0.68 -20.68 5.19 -465.36 -2.41 -23.09 16 10 C 0.14 5.08 4.85 86.38 0.42 5.50 16 11 C 0.09 3.46 0.78 -10.70 -0.01 3.45 16 12 C -0.15 -5.11 7.86 71.98 0.57 -4.55 16 13 C 0.17 8.10 4.11 86.35 0.35 8.45 16 14 N -0.61 -29.70 2.57 -697.51 -1.79 -31.49 16 15 C -0.26 -13.68 9.65 84.03 0.81 -12.87 16 16 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 17 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 18 N -0.94 -54.68 11.14 21.65 0.24 -54.44 16 19 Si 0.97 43.95 29.58 68.60 2.03 45.98 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 C 0.10 4.12 6.73 86.35 0.58 4.71 16 24 C 0.05 1.69 6.60 72.08 0.48 2.16 16 25 O -0.39 -13.94 10.17 -148.98 -1.52 -15.46 16 26 N -0.51 -11.89 9.60 -177.09 -1.70 -13.59 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.22 1.13 8.06 -2.91 -0.02 1.10 16 31 H 0.17 2.86 7.74 -2.91 -0.02 2.84 16 32 H 0.42 11.65 6.39 -92.71 -0.59 11.06 16 33 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.06 2.31 6.12 -2.39 -0.01 2.29 16 36 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.07 2.00 6.59 -2.39 -0.02 1.99 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.07 3.65 6.16 -2.39 -0.01 3.64 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 42 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 44 H 0.06 1.85 6.26 -2.39 -0.01 1.84 16 Total: -1.00 -69.64 360.18 0.85 -68.79 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.43 Total: 22.12 kcal Atomic # 6 Polarization: 25.07 SS G_CDS: 7.56 Total: 32.63 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -7.60 Total: -133.87 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.58 Total: -35.64 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.64 0.85 -68.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108403406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.639 kcal (2) G-P(sol) polarization free energy of solvation -69.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds