Wall clock time and date at job start Tue Mar 31 2020 04:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29947 * 126.28802 * 2 1 4 4 O 1.21301 * 110.25269 * 180.02562 * 3 2 1 5 5 C 1.33638 * 109.81100 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.54988 * 179.97438 * 5 4 3 7 7 C 1.52990 * 109.47080 * 270.01884 * 6 5 4 8 8 C 1.50699 * 109.47080 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00377 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00255 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00359 * 179.72817 * 10 8 7 12 12 H 1.09005 * 110.56149 * 33.12870 * 11 10 8 13 13 C 1.54855 * 110.63208 * 156.03030 * 11 10 8 14 14 C 1.55846 * 103.44579 * 118.48442 * 13 11 10 15 15 H 1.09002 * 115.55758 * 159.56581 * 14 13 11 16 16 C 1.55840 * 105.06701 * 288.17953 * 14 13 11 17 17 C 1.54851 * 103.44499 * 71.82329 * 16 14 13 18 18 C 1.55841 * 103.44536 * 0.02562 * 17 16 14 19 19 H 1.09007 * 115.55705 * 159.56472 * 18 17 16 20 20 N 1.50232 * 101.05530 * 32.93610 * 18 17 16 21 21 C 1.36931 * 130.84311 * 126.02627 * 20 18 17 22 22 H 1.08006 * 119.99567 * 0.03359 * 21 20 18 23 23 C 1.38807 * 120.00518 * 180.02562 * 21 20 18 24 24 N 1.31625 * 120.00002 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00304 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46934 * 60.00245 * 25 23 21 27 27 H 1.48503 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47193 * 300.00014 * 25 23 21 29 29 N 1.31130 * 106.89826 * 0.21860 * 5 4 3 30 30 H 1.09000 * 109.47237 * 89.97365 * 1 2 3 31 31 H 1.09006 * 109.46780 * 209.97389 * 1 2 3 32 32 H 1.08996 * 109.47171 * 329.96791 * 1 2 3 33 33 H 1.09010 * 109.47093 * 150.02043 * 6 5 4 34 34 H 1.08999 * 109.47399 * 30.02683 * 6 5 4 35 35 H 1.09003 * 109.47256 * 60.00409 * 7 6 5 36 36 H 1.08999 * 109.47744 * 300.00092 * 7 6 5 37 37 H 0.97001 * 119.99820 * 359.97438 * 10 8 7 38 38 H 1.08996 * 110.62572 * 236.98026 * 13 11 10 39 39 H 1.08999 * 110.62292 * 359.97438 * 13 11 10 40 40 H 1.08998 * 110.62858 * 190.31449 * 16 14 13 41 41 H 1.09003 * 110.62465 * 313.33369 * 16 14 13 42 42 H 1.09008 * 110.62444 * 118.49290 * 17 16 14 43 43 H 1.09002 * 110.62761 * 241.34789 * 17 16 14 44 44 H 0.96996 * 120.00321 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5299 -0.6211 -0.0015 6 6 4.7970 -1.4369 -0.0029 7 6 5.2250 -1.7116 -1.4457 8 6 6.4925 -2.5268 -1.4472 9 8 7.0029 -2.8562 -0.3974 10 7 7.0589 -2.8900 -2.6150 11 6 8.2942 -3.6775 -2.6164 12 1 8.3186 -4.3529 -1.7612 13 6 8.4357 -4.4683 -3.9403 14 6 9.7488 -3.9034 -4.5612 15 1 10.2271 -4.5381 -5.3072 16 6 9.3859 -2.4641 -5.0359 17 6 9.2445 -1.6734 -3.7120 18 6 9.5418 -2.7425 -2.6178 19 1 9.8366 -2.3499 -1.6445 20 7 10.5484 -3.6055 -3.3242 21 6 11.8067 -3.9993 -2.9547 22 1 12.2173 -3.6773 -2.0090 23 6 12.5544 -4.8124 -3.7952 24 7 12.0542 -5.2045 -4.9478 25 14 14.2707 -5.3502 -3.2906 26 1 14.1958 -6.1182 -2.0219 27 1 14.8540 -6.2065 -4.3545 28 1 15.1271 -4.1529 -3.0947 29 7 2.3031 -1.0841 -0.0063 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3633 0.8897 0.5143 33 1 4.6209 -2.3825 0.5102 34 1 5.5845 -0.8859 0.5112 35 1 5.4011 -0.7661 -1.9588 36 1 4.4376 -2.2627 -1.9598 37 1 6.6505 -2.6270 -3.4546 38 1 8.5330 -5.5355 -3.7414 39 1 7.5865 -4.2749 -4.5956 40 1 10.1864 -2.0483 -5.6478 41 1 8.4438 -2.4667 -5.5842 42 1 9.9749 -0.8654 -3.6674 43 1 8.2331 -1.2813 -3.6051 44 1 12.5768 -5.7724 -5.5353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109582473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:33 Heat of formation + Delta-G solvation = 74.219719 kcal Electronic energy + Delta-G solvation = -26712.154850 eV Core-core repulsion = 22862.175805 eV Total energy + Delta-G solvation = -3849.979044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.87288 -40.12222 -38.54325 -36.41412 -34.90684 -33.97964 -32.38580 -31.79161 -29.54231 -29.31415 -29.05240 -27.79469 -25.77899 -24.16133 -23.69128 -21.73572 -21.29067 -20.45082 -19.55178 -18.60954 -18.40384 -17.75480 -17.23488 -16.82040 -15.85818 -15.49611 -15.05011 -14.83101 -14.54993 -14.27963 -14.01574 -13.97149 -13.67958 -13.36218 -13.11194 -12.71722 -12.58277 -12.32677 -12.23064 -11.79085 -11.63721 -11.51116 -11.50457 -11.30945 -11.07398 -10.93916 -10.92313 -10.84018 -10.24830 -10.22471 -10.13286 -9.90467 -9.71429 -9.39449 -9.26953 -8.94863 -8.55577 -6.93672 -5.74371 -3.12406 0.82789 1.89752 2.47217 2.74650 3.24615 3.39731 3.43748 3.44486 3.49247 3.74315 4.41586 4.44820 4.59970 4.70312 4.91497 4.98044 5.04374 5.15637 5.17608 5.26198 5.36124 5.44428 5.52752 5.54930 5.63994 5.71886 5.77231 5.82169 5.93715 6.03889 6.08926 6.27082 6.30142 6.50636 6.56458 6.64323 6.77971 6.92504 6.96543 7.24352 7.50308 7.68913 7.79457 7.86947 8.13489 8.39460 9.08688 9.71340 10.51338 11.35364 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.002304 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.101611 B =12150.946395 C =12347.300083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.388 5.388 4 O 0.077 5.923 5 C 0.191 3.809 6 C -0.013 4.013 7 C -0.140 4.140 8 C 0.512 3.488 9 O -0.542 6.542 10 N -0.710 5.710 11 C 0.126 3.874 12 H 0.085 0.915 13 C -0.142 4.142 14 C 0.156 3.844 15 H 0.153 0.847 16 C -0.138 4.138 17 C -0.131 4.131 18 C 0.129 3.871 19 H 0.086 0.914 20 N -0.589 5.589 21 C -0.211 4.211 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.924 5.924 25 Si 0.917 3.083 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.286 1.286 29 N -0.482 5.482 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.396 0.604 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.066 8.649 4.320 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.097 5.097 4 O 0.020 5.980 5 C -0.030 4.030 6 C -0.052 4.052 7 C -0.181 4.181 8 C 0.298 3.702 9 O -0.420 6.420 10 N -0.360 5.360 11 C 0.020 3.980 12 H 0.103 0.897 13 C -0.182 4.182 14 C 0.049 3.951 15 H 0.169 0.831 16 C -0.177 4.177 17 C -0.171 4.171 18 C 0.019 3.981 19 H 0.104 0.896 20 N -0.309 5.309 21 C -0.339 4.339 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.748 3.252 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.213 1.213 29 N -0.217 5.217 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.231 0.769 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.014 8.734 5.025 22.408 hybrid contribution 0.713 -0.078 -0.201 0.745 sum -19.301 8.656 4.825 21.697 Atomic orbital electron populations 1.20139 0.82951 1.04658 1.04328 1.25942 1.00648 0.83581 1.00532 1.74651 0.89443 1.23974 1.21666 1.85309 1.22287 1.24884 1.65559 1.28900 0.97027 0.82093 0.94945 1.19994 0.87702 0.99085 0.98415 1.21636 0.97366 1.02174 0.96907 1.20208 0.85270 0.80354 0.84402 1.90732 1.64432 1.55597 1.31197 1.46236 1.27020 1.54988 1.07757 1.22698 0.82501 0.93395 0.99378 0.89692 1.23308 0.99967 0.99699 0.95210 1.23705 0.87234 0.93123 0.91011 0.83056 1.23062 0.98914 0.99738 0.96029 1.22926 0.98959 0.98059 0.97140 1.23185 0.88635 0.91249 0.94993 0.89641 1.46446 1.12357 1.55069 1.17043 1.19009 0.88522 1.24216 1.02151 0.90336 1.24707 0.98861 1.00456 0.96736 1.69452 1.36905 1.40050 1.10781 0.86104 0.83622 0.78177 0.77320 1.21182 1.21596 1.21256 1.71938 0.99756 1.29349 1.20627 0.89295 0.88998 0.89545 0.86208 0.86883 0.88167 0.88130 0.76938 0.91603 0.92719 0.92648 0.93655 0.93050 0.93124 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.17 1.69 8.22 -156.37 -1.28 0.41 16 3 N -0.39 -4.45 12.16 30.90 0.38 -4.07 16 4 O 0.08 0.84 11.31 18.11 0.20 1.04 16 5 C 0.19 1.87 7.77 -13.06 -0.10 1.77 16 6 C -0.01 -0.11 5.13 -27.89 -0.14 -0.25 16 7 C -0.14 -1.16 5.68 -27.89 -0.16 -1.32 16 8 C 0.51 6.49 7.83 -10.98 -0.09 6.41 16 9 O -0.54 -9.02 15.64 5.55 0.09 -8.94 16 10 N -0.71 -9.24 3.71 -51.36 -0.19 -9.43 16 11 C 0.13 2.21 3.15 -65.40 -0.21 2.01 16 12 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 13 C -0.14 -2.57 6.20 -24.23 -0.15 -2.72 16 14 C 0.16 3.39 4.69 -62.78 -0.29 3.10 16 15 H 0.15 3.80 5.58 -51.93 -0.29 3.51 16 16 C -0.14 -2.55 6.44 -24.24 -0.16 -2.70 16 17 C -0.13 -2.29 6.31 -24.24 -0.15 -2.44 16 18 C 0.13 2.57 5.35 -62.77 -0.34 2.23 16 19 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 20 N -0.59 -14.28 2.99 -145.76 -0.44 -14.72 16 21 C -0.21 -5.72 10.59 -15.06 -0.16 -5.88 16 22 H 0.08 2.09 7.83 -52.48 -0.41 1.67 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.92 -25.83 10.48 55.49 0.58 -25.25 16 25 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 N -0.48 -5.28 11.55 -9.87 -0.11 -5.39 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.12 1.06 8.10 -51.92 -0.42 0.64 16 34 H 0.11 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 4.13 7.91 -40.82 -0.32 3.80 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.05 0.82 7.39 -51.93 -0.38 0.44 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.70 7.82 -51.93 -0.41 0.29 16 42 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 43 H 0.05 0.72 6.40 -51.93 -0.33 0.39 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -32.08 360.36 -8.35 -40.43 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.32 Total: 3.96 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.95 Total: 0.18 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.22 Total: -58.86 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.29 Total: -7.89 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.08 -8.35 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109582473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.648 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds