Wall clock time and date at job start Tue Mar 31 2020 04:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29947 * 126.28802 * 2 1 4 4 O 1.21301 * 110.25269 * 180.02562 * 3 2 1 5 5 C 1.33638 * 109.81100 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.54988 * 179.97438 * 5 4 3 7 7 C 1.52990 * 109.47080 * 270.01884 * 6 5 4 8 8 C 1.50699 * 109.47080 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00377 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00255 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00359 * 179.72817 * 10 8 7 12 12 H 1.09005 * 110.56149 * 33.12870 * 11 10 8 13 13 C 1.54855 * 110.63208 * 156.03030 * 11 10 8 14 14 C 1.55846 * 103.44579 * 118.48442 * 13 11 10 15 15 H 1.09002 * 115.55758 * 159.56581 * 14 13 11 16 16 C 1.55840 * 105.06701 * 288.17953 * 14 13 11 17 17 C 1.54851 * 103.44499 * 71.82329 * 16 14 13 18 18 C 1.55841 * 103.44536 * 0.02562 * 17 16 14 19 19 H 1.09007 * 115.55705 * 159.56472 * 18 17 16 20 20 N 1.50232 * 101.05530 * 32.93610 * 18 17 16 21 21 C 1.36931 * 130.84311 * 126.02627 * 20 18 17 22 22 H 1.08006 * 119.99567 * 0.03359 * 21 20 18 23 23 C 1.38807 * 120.00518 * 180.02562 * 21 20 18 24 24 N 1.31625 * 120.00002 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00304 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46934 * 60.00245 * 25 23 21 27 27 H 1.48503 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47193 * 300.00014 * 25 23 21 29 29 N 1.31130 * 106.89826 * 0.21860 * 5 4 3 30 30 H 1.09000 * 109.47237 * 89.97365 * 1 2 3 31 31 H 1.09006 * 109.46780 * 209.97389 * 1 2 3 32 32 H 1.08996 * 109.47171 * 329.96791 * 1 2 3 33 33 H 1.09010 * 109.47093 * 150.02043 * 6 5 4 34 34 H 1.08999 * 109.47399 * 30.02683 * 6 5 4 35 35 H 1.09003 * 109.47256 * 60.00409 * 7 6 5 36 36 H 1.08999 * 109.47744 * 300.00092 * 7 6 5 37 37 H 0.97001 * 119.99820 * 359.97438 * 10 8 7 38 38 H 1.08996 * 110.62572 * 236.98026 * 13 11 10 39 39 H 1.08999 * 110.62292 * 359.97438 * 13 11 10 40 40 H 1.08998 * 110.62858 * 190.31449 * 16 14 13 41 41 H 1.09003 * 110.62465 * 313.33369 * 16 14 13 42 42 H 1.09008 * 110.62444 * 118.49290 * 17 16 14 43 43 H 1.09002 * 110.62761 * 241.34789 * 17 16 14 44 44 H 0.96996 * 120.00321 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5299 -0.6211 -0.0015 6 6 4.7970 -1.4369 -0.0029 7 6 5.2250 -1.7116 -1.4457 8 6 6.4925 -2.5268 -1.4472 9 8 7.0029 -2.8562 -0.3974 10 7 7.0589 -2.8900 -2.6150 11 6 8.2942 -3.6775 -2.6164 12 1 8.3186 -4.3529 -1.7612 13 6 8.4357 -4.4683 -3.9403 14 6 9.7488 -3.9034 -4.5612 15 1 10.2271 -4.5381 -5.3072 16 6 9.3859 -2.4641 -5.0359 17 6 9.2445 -1.6734 -3.7120 18 6 9.5418 -2.7425 -2.6178 19 1 9.8366 -2.3499 -1.6445 20 7 10.5484 -3.6055 -3.3242 21 6 11.8067 -3.9993 -2.9547 22 1 12.2173 -3.6773 -2.0090 23 6 12.5544 -4.8124 -3.7952 24 7 12.0542 -5.2045 -4.9478 25 14 14.2707 -5.3502 -3.2906 26 1 14.1958 -6.1182 -2.0219 27 1 14.8540 -6.2065 -4.3545 28 1 15.1271 -4.1529 -3.0947 29 7 2.3031 -1.0841 -0.0063 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3633 0.8897 0.5143 33 1 4.6209 -2.3825 0.5102 34 1 5.5845 -0.8859 0.5112 35 1 5.4011 -0.7661 -1.9588 36 1 4.4376 -2.2627 -1.9598 37 1 6.6505 -2.6270 -3.4546 38 1 8.5330 -5.5355 -3.7414 39 1 7.5865 -4.2749 -4.5956 40 1 10.1864 -2.0483 -5.6478 41 1 8.4438 -2.4667 -5.5842 42 1 9.9749 -0.8654 -3.6674 43 1 8.2331 -1.2813 -3.6051 44 1 12.5768 -5.7724 -5.5353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109582473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:32 Heat of formation + Delta-G solvation = 52.416355 kcal Electronic energy + Delta-G solvation = -26713.100315 eV Core-core repulsion = 22862.175805 eV Total energy + Delta-G solvation = -3850.924509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.63102 -41.44233 -39.86248 -37.15604 -35.69910 -35.36597 -34.17396 -32.58033 -30.97914 -30.69702 -30.07482 -29.25206 -26.82713 -25.86532 -24.48484 -22.87499 -22.35412 -21.66961 -21.07330 -20.08738 -19.25600 -18.88379 -18.51907 -17.95403 -16.84251 -16.77698 -16.71231 -16.10038 -15.70674 -15.68217 -15.02617 -14.87594 -14.45480 -14.33393 -13.95691 -13.89226 -13.63833 -13.43982 -13.42229 -13.20404 -13.14763 -12.84305 -12.77448 -12.56695 -12.33843 -12.30886 -12.19830 -12.04517 -12.00584 -11.86777 -11.52850 -11.16078 -11.02110 -10.97638 -10.73852 -10.71719 -9.91979 -8.83074 -7.78052 -5.16803 0.08086 1.16498 1.47096 1.49176 1.55136 1.71884 1.74136 2.30098 2.52239 2.71466 3.07794 3.35481 3.54060 3.67115 3.90310 3.99135 4.06365 4.14103 4.18462 4.22800 4.45721 4.49121 4.53645 4.57030 4.59563 4.65392 4.66566 4.76232 4.82966 4.85767 4.94632 4.98266 5.02272 5.11783 5.12268 5.19414 5.29515 5.37251 5.50549 5.58867 5.80566 5.92674 6.28805 6.70325 7.07441 7.12961 7.39325 7.71391 8.57444 9.28722 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.002304 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.101611 B =12150.946395 C =12347.300083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.162 3.838 3 N -0.411 5.411 4 O 0.069 5.931 5 C 0.199 3.801 6 C -0.009 4.009 7 C -0.125 4.125 8 C 0.514 3.486 9 O -0.584 6.584 10 N -0.699 5.699 11 C 0.147 3.853 12 H 0.055 0.945 13 C -0.128 4.128 14 C 0.138 3.862 15 H 0.116 0.884 16 C -0.127 4.127 17 C -0.116 4.116 18 C 0.118 3.882 19 H 0.069 0.931 20 N -0.619 5.619 21 C -0.223 4.223 22 H 0.072 0.928 23 C -0.066 4.066 24 N -0.944 5.944 25 Si 0.975 3.025 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.282 1.282 29 N -0.501 5.501 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.416 0.584 38 H 0.043 0.957 39 H 0.097 0.903 40 H 0.032 0.968 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.093 0.907 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.668 9.927 3.904 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.123 5.123 4 O 0.014 5.986 5 C -0.021 4.021 6 C -0.048 4.048 7 C -0.165 4.165 8 C 0.302 3.698 9 O -0.464 6.464 10 N -0.351 5.351 11 C 0.039 3.961 12 H 0.073 0.927 13 C -0.167 4.167 14 C 0.032 3.968 15 H 0.133 0.867 16 C -0.166 4.166 17 C -0.156 4.156 18 C 0.010 3.990 19 H 0.088 0.912 20 N -0.341 5.341 21 C -0.352 4.352 22 H 0.089 0.911 23 C -0.258 4.258 24 N -0.594 5.594 25 Si 0.804 3.196 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.209 1.209 29 N -0.236 5.236 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.254 0.746 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.111 0.889 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -22.659 10.046 4.597 25.209 hybrid contribution 1.473 -0.466 0.002 1.545 sum -21.186 9.580 4.599 23.702 Atomic orbital electron populations 1.20350 0.80514 1.05678 1.05604 1.26646 1.02143 0.83034 0.99201 1.74653 0.89770 1.24751 1.23089 1.85284 1.22249 1.25199 1.65902 1.29033 0.97114 0.81882 0.94046 1.19990 0.87289 0.98751 0.98810 1.21576 0.95105 1.02731 0.97111 1.20916 0.85969 0.79623 0.83294 1.90734 1.65831 1.57100 1.32774 1.45970 1.25489 1.54510 1.09144 1.22057 0.83561 0.92593 0.97848 0.92676 1.23131 0.99565 0.98219 0.95804 1.23622 0.88217 0.94943 0.89992 0.86683 1.22956 1.00156 0.97058 0.96451 1.22832 1.01039 0.96600 0.95095 1.23354 0.88645 0.92098 0.94912 0.91242 1.46722 1.12401 1.56155 1.18823 1.19257 0.90219 1.23890 1.01858 0.91059 1.25417 1.02063 1.01238 0.97128 1.69692 1.37617 1.40655 1.11409 0.85201 0.80021 0.77646 0.76754 1.20964 1.21791 1.20850 1.71968 1.00281 1.29880 1.21472 0.87767 0.88007 0.88481 0.86655 0.86513 0.85447 0.86010 0.74644 0.93837 0.88486 0.94938 0.89349 0.94109 0.88896 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.51 71.24 0.75 0.13 16 2 C 0.16 2.99 8.22 138.46 1.14 4.13 16 3 N -0.41 -8.74 12.16 -60.31 -0.73 -9.47 16 4 O 0.07 1.37 11.31 74.88 0.85 2.21 16 5 C 0.20 3.48 7.77 88.38 0.69 4.17 16 6 C -0.01 -0.13 5.13 29.84 0.15 0.02 16 7 C -0.12 -1.58 5.68 29.84 0.17 -1.41 16 8 C 0.51 11.57 7.83 87.66 0.69 12.26 16 9 O -0.58 -18.80 15.64 -3.04 -0.05 -18.85 16 10 N -0.70 -15.81 3.71 -434.80 -1.61 -17.42 16 11 C 0.15 4.97 3.15 46.63 0.15 5.12 16 12 H 0.05 2.22 7.58 -2.38 -0.02 2.20 16 13 C -0.13 -4.45 6.20 32.21 0.20 -4.25 16 14 C 0.14 6.01 4.69 46.22 0.22 6.23 16 15 H 0.12 5.95 5.58 -2.39 -0.01 5.94 16 16 C -0.13 -4.42 6.44 32.21 0.21 -4.22 16 17 C -0.12 -3.77 6.31 32.21 0.20 -3.57 16 18 C 0.12 4.67 5.35 46.25 0.25 4.92 16 19 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 20 N -0.62 -30.67 2.99 -615.07 -1.84 -32.51 16 21 C -0.22 -12.50 10.59 84.03 0.89 -11.61 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 24 N -0.94 -54.59 10.48 21.65 0.23 -54.37 16 25 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 29 N -0.50 -9.90 11.55 -303.19 -3.50 -13.40 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.12 1.84 8.10 -2.38 -0.02 1.82 16 34 H 0.12 1.65 8.10 -2.39 -0.02 1.63 16 35 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.42 6.39 7.91 -92.71 -0.73 5.66 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 2.53 7.39 -2.39 -0.02 2.51 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 2.31 7.82 -2.39 -0.02 2.30 16 42 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.09 2.21 6.40 -2.39 -0.02 2.20 16 44 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -73.65 360.36 1.82 -71.83 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.30 Total: 15.27 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.16 Total: 8.69 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -7.46 Total: -127.17 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.80 Total: -16.63 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -73.65 1.82 -71.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109582473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.244 kcal (2) G-P(sol) polarization free energy of solvation -73.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds