Wall clock time and date at job start Tue Mar 31 2020 04:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30648 * 128.64533 * 2 1 4 4 O 1.20834 * 109.62039 * 179.97438 * 3 2 1 5 5 N 1.20899 * 115.90879 * 359.73757 * 4 3 2 6 6 C 1.31599 * 109.17913 * 0.42620 * 5 4 3 7 7 C 1.48286 * 128.70955 * 179.88647 * 6 5 4 8 8 O 1.21502 * 119.99734 * 179.67330 * 7 6 5 9 9 N 1.34771 * 119.99920 * 359.67179 * 7 6 5 10 10 C 1.48116 * 127.84490 * 0.02562 * 9 7 6 11 11 C 1.54334 * 104.69258 * 219.73856 * 10 9 7 12 12 H 1.09002 * 111.85310 * 214.57529 * 11 10 9 13 13 C 1.54164 * 109.66054 * 89.92176 * 11 10 9 14 14 C 1.53956 * 104.75521 * 224.70569 * 13 11 10 15 15 C 1.54841 * 103.15006 * 37.00293 * 14 13 11 16 16 C 1.54163 * 104.32831 * 322.50830 * 15 14 13 17 17 C 1.53001 * 111.82502 * 261.25170 * 16 15 14 18 18 N 1.46497 * 109.46908 * 299.25844 * 17 16 15 19 19 C 1.36942 * 119.99920 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99931 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99976 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00346 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46956 * 60.00275 * 23 21 19 25 25 H 1.48499 * 109.47364 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47001 * 300.00338 * 23 21 19 27 27 C 1.48120 * 127.84224 * 179.97438 * 9 7 6 28 28 H 1.09000 * 109.46963 * 270.03014 * 1 2 3 29 29 H 1.08999 * 109.46946 * 30.02493 * 1 2 3 30 30 H 1.08996 * 109.46835 * 150.03181 * 1 2 3 31 31 H 1.09002 * 110.39535 * 100.93932 * 10 9 7 32 32 H 1.08999 * 110.39511 * 338.54208 * 10 9 7 33 33 H 1.09003 * 110.45976 * 342.13643 * 13 11 10 34 34 H 1.09003 * 110.45777 * 104.70713 * 13 11 10 35 35 H 1.08998 * 109.96129 * 278.83825 * 14 13 11 36 36 H 1.08994 * 111.31678 * 155.81516 * 14 13 11 37 37 H 1.09002 * 110.46568 * 203.79892 * 15 14 13 38 38 H 1.08996 * 110.46393 * 81.22255 * 15 14 13 39 39 H 1.09005 * 109.46847 * 59.25544 * 17 16 15 40 40 H 1.08995 * 109.47361 * 179.25743 * 17 16 15 41 41 H 0.97001 * 120.00083 * 359.97438 * 18 17 16 42 42 H 0.97001 * 120.00317 * 179.97438 * 22 21 19 43 43 H 1.09003 * 110.39272 * 21.46003 * 27 9 7 44 44 H 1.09000 * 110.49382 * 259.11056 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4652 0.6265 0.0005 5 7 3.6101 -0.5738 0.0059 6 6 2.4280 -1.1520 0.0006 7 6 2.1034 -2.5989 0.0017 8 8 0.9436 -2.9612 0.0022 9 7 3.0947 -3.5119 0.0021 10 6 4.5555 -3.2671 0.0022 11 6 5.1313 -4.3350 -0.9518 12 1 6.1111 -4.6842 -0.6259 13 6 5.1698 -3.7796 -2.3894 14 6 4.6241 -4.9218 -3.2657 15 6 3.5142 -5.5436 -2.3831 16 6 4.0817 -5.4745 -0.9514 17 6 4.6883 -6.8097 -0.5150 18 7 3.6528 -7.8458 -0.5339 19 6 3.9639 -9.1313 -0.1790 20 1 4.9726 -9.3812 0.1152 21 6 2.9827 -10.1129 -0.1964 22 7 1.7533 -9.8084 -0.5544 23 14 3.4070 -11.8664 0.2884 24 1 3.9092 -11.8858 1.6858 25 1 2.1929 -12.7155 0.1875 26 1 4.4560 -12.3915 -0.6220 27 6 2.9707 -4.9879 0.0037 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8903 -0.5133 31 1 4.9621 -3.3952 1.0054 32 1 4.7731 -2.2667 -0.3719 33 1 4.5141 -2.9137 -2.4810 34 1 6.1901 -3.5175 -2.6694 35 1 5.4124 -5.6481 -3.4636 36 1 4.2082 -4.5415 -4.1986 37 1 3.3330 -6.5790 -2.6716 38 1 2.5965 -4.9602 -2.4577 39 1 5.4906 -7.0853 -1.1995 40 1 5.0885 -6.7143 0.4943 41 1 2.7467 -7.6213 -0.7977 42 1 1.0677 -10.4944 -0.5669 43 1 1.9912 -5.2871 -0.3693 44 1 3.1315 -5.3833 1.0066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112591190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:23 Heat of formation + Delta-G solvation = 95.812491 kcal Electronic energy + Delta-G solvation = -27841.558610 eV Core-core repulsion = 23992.515899 eV Total energy + Delta-G solvation = -3849.042712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.13600 -40.72360 -38.75321 -35.52718 -35.21104 -34.66408 -34.26326 -31.70172 -30.07691 -29.87384 -29.23194 -26.69832 -25.51342 -24.91036 -23.57736 -22.68673 -22.27753 -20.33722 -20.16750 -19.31508 -18.80976 -17.90153 -17.42474 -16.74155 -16.05403 -15.80962 -14.98828 -14.73636 -14.49119 -14.45044 -13.92143 -13.86994 -13.69795 -13.62147 -13.35077 -13.12082 -12.85091 -12.49838 -12.38765 -12.23923 -11.78301 -11.51317 -11.38897 -11.16800 -10.96036 -10.84682 -10.79002 -10.62003 -10.59740 -10.55420 -10.50199 -10.33067 -10.24618 -9.98847 -9.66142 -8.90758 -8.77060 -6.94125 -5.77263 -3.06560 0.52174 1.03758 2.35076 2.79148 3.10313 3.18057 3.43474 3.48090 3.49111 3.57816 4.28636 4.41933 4.46814 4.56117 4.62840 4.71691 4.82649 5.14418 5.23644 5.28443 5.33991 5.34521 5.37985 5.55023 5.58692 5.62520 5.66375 5.69194 5.76607 5.84236 5.90673 6.00403 6.05052 6.18033 6.18759 6.30383 6.43473 6.50513 6.66974 6.72279 6.76676 7.30299 7.68426 7.76481 8.18398 8.40976 9.52513 10.08900 10.43617 11.45156 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.003260 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.732289 B = 8586.944039 C = 9293.893853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.061 3.939 3 N -0.359 5.359 4 O 0.337 5.663 5 N -0.320 5.320 6 C -0.032 4.032 7 C 0.619 3.381 8 O -0.513 6.513 9 N -0.599 5.599 10 C 0.096 3.904 11 C -0.098 4.098 12 H 0.097 0.903 13 C -0.113 4.113 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.074 4.074 17 C 0.175 3.825 18 N -0.730 5.730 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.122 3.878 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.026 0.974 40 H 0.021 0.979 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.091 0.909 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.786 20.923 -1.167 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 N -0.085 5.085 4 O 0.113 5.887 5 N -0.042 5.042 6 C -0.197 4.197 7 C 0.404 3.596 8 O -0.387 6.387 9 N -0.332 5.332 10 C -0.027 4.027 11 C -0.117 4.117 12 H 0.116 0.884 13 C -0.151 4.151 14 C -0.159 4.159 15 C -0.150 4.150 16 C -0.075 4.075 17 C 0.047 3.953 18 N -0.375 5.375 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.001 3.999 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.090 21.338 -1.099 21.754 hybrid contribution -0.647 -1.447 0.265 1.607 sum 3.443 19.891 -0.834 20.204 Atomic orbital electron populations 1.20358 0.82871 1.05327 1.04815 1.26240 1.00396 0.85113 0.98728 1.75056 0.91188 1.24010 1.18263 1.85059 1.23312 1.16913 1.63379 1.75387 1.22953 0.92614 1.13209 1.26099 0.87988 0.98313 1.07342 1.15939 0.84574 0.80889 0.78229 1.90850 1.18196 1.79129 1.50547 1.48749 1.06604 1.07756 1.70052 1.22794 0.79032 1.00532 1.00319 1.22750 0.99314 0.94412 0.95248 0.88430 1.22211 1.00599 0.98181 0.94073 1.22300 0.98506 0.97389 0.97702 1.22450 0.97204 1.02415 0.92921 1.22314 0.94025 0.95475 0.95697 1.20548 0.92050 0.85427 0.97290 1.42358 1.08382 1.05080 1.81692 1.19150 0.95008 0.85419 1.37743 0.91259 1.24726 0.95608 0.98110 1.02300 1.69642 1.01152 1.33024 1.54141 0.86286 0.76883 0.84808 0.78284 1.21306 1.21719 1.21307 1.22582 1.00778 0.75812 1.00687 0.88776 0.89445 0.87837 0.90604 0.88736 0.92435 0.91534 0.91385 0.91991 0.89618 0.92207 0.95602 0.96079 0.78085 0.93418 0.89026 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.22 36.01 0.37 -0.25 16 2 C 0.06 0.66 7.79 -79.33 -0.62 0.04 16 3 N -0.36 -3.88 12.22 33.76 0.41 -3.47 16 4 O 0.34 3.59 11.65 27.27 0.32 3.90 16 5 N -0.32 -3.64 9.64 33.49 0.32 -3.32 16 6 C -0.03 -0.40 7.38 -80.07 -0.59 -0.99 16 7 C 0.62 9.07 7.94 -12.13 -0.10 8.98 16 8 O -0.51 -8.74 16.22 5.36 0.09 -8.65 16 9 N -0.60 -8.42 3.31 -170.33 -0.56 -8.99 16 10 C 0.10 1.12 6.06 -2.45 -0.01 1.11 16 11 C -0.10 -1.17 3.53 -88.30 -0.31 -1.49 16 12 H 0.10 1.07 7.88 -51.93 -0.41 0.66 16 13 C -0.11 -1.28 6.24 -25.62 -0.16 -1.44 16 14 C -0.12 -1.55 6.86 -25.26 -0.17 -1.72 16 15 C -0.11 -1.74 5.59 -25.15 -0.14 -1.88 16 16 C -0.07 -1.12 0.62 -152.16 -0.09 -1.21 16 17 C 0.17 3.26 5.19 -4.04 -0.02 3.24 16 18 N -0.73 -17.50 4.93 -59.91 -0.30 -17.80 16 19 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 23 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.12 1.96 5.49 -2.43 -0.01 1.94 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.93 7.31 -51.93 -0.38 0.56 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.04 5.27 -51.93 -0.27 0.76 16 33 H 0.06 0.67 7.64 -51.93 -0.40 0.28 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.57 7.14 -51.93 -0.37 1.20 16 38 H 0.06 0.95 7.58 -51.93 -0.39 0.56 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.38 9.77 6.87 -40.82 -0.28 9.49 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.09 1.66 7.44 -51.93 -0.39 1.27 16 44 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -30.35 356.67 -6.99 -37.34 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.23 Total: 6.28 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.11 Total: -0.80 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.60 Total: -60.54 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.40 Total: -4.74 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.35 -6.99 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112591190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.154 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds