Wall clock time and date at job start Tue Mar 31 2020 04:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30648 * 128.64533 * 2 1 4 4 O 1.20834 * 109.62039 * 179.97438 * 3 2 1 5 5 N 1.20899 * 115.90879 * 359.73757 * 4 3 2 6 6 C 1.31599 * 109.17913 * 0.42620 * 5 4 3 7 7 C 1.48286 * 128.70955 * 179.88647 * 6 5 4 8 8 O 1.21502 * 119.99734 * 179.67330 * 7 6 5 9 9 N 1.34771 * 119.99920 * 359.67179 * 7 6 5 10 10 C 1.48116 * 127.84490 * 0.02562 * 9 7 6 11 11 C 1.54334 * 104.69258 * 219.73856 * 10 9 7 12 12 H 1.09002 * 111.85310 * 214.57529 * 11 10 9 13 13 C 1.54164 * 109.66054 * 89.92176 * 11 10 9 14 14 C 1.53956 * 104.75521 * 224.70569 * 13 11 10 15 15 C 1.54841 * 103.15006 * 37.00293 * 14 13 11 16 16 C 1.54163 * 104.32831 * 322.50830 * 15 14 13 17 17 C 1.53001 * 111.82502 * 261.25170 * 16 15 14 18 18 N 1.46497 * 109.46908 * 299.25844 * 17 16 15 19 19 C 1.36942 * 119.99920 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99931 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99976 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00346 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46956 * 60.00275 * 23 21 19 25 25 H 1.48499 * 109.47364 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47001 * 300.00338 * 23 21 19 27 27 C 1.48120 * 127.84224 * 179.97438 * 9 7 6 28 28 H 1.09000 * 109.46963 * 270.03014 * 1 2 3 29 29 H 1.08999 * 109.46946 * 30.02493 * 1 2 3 30 30 H 1.08996 * 109.46835 * 150.03181 * 1 2 3 31 31 H 1.09002 * 110.39535 * 100.93932 * 10 9 7 32 32 H 1.08999 * 110.39511 * 338.54208 * 10 9 7 33 33 H 1.09003 * 110.45976 * 342.13643 * 13 11 10 34 34 H 1.09003 * 110.45777 * 104.70713 * 13 11 10 35 35 H 1.08998 * 109.96129 * 278.83825 * 14 13 11 36 36 H 1.08994 * 111.31678 * 155.81516 * 14 13 11 37 37 H 1.09002 * 110.46568 * 203.79892 * 15 14 13 38 38 H 1.08996 * 110.46393 * 81.22255 * 15 14 13 39 39 H 1.09005 * 109.46847 * 59.25544 * 17 16 15 40 40 H 1.08995 * 109.47361 * 179.25743 * 17 16 15 41 41 H 0.97001 * 120.00083 * 359.97438 * 18 17 16 42 42 H 0.97001 * 120.00317 * 179.97438 * 22 21 19 43 43 H 1.09003 * 110.39272 * 21.46003 * 27 9 7 44 44 H 1.09000 * 110.49382 * 259.11056 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4652 0.6265 0.0005 5 7 3.6101 -0.5738 0.0059 6 6 2.4280 -1.1520 0.0006 7 6 2.1034 -2.5989 0.0017 8 8 0.9436 -2.9612 0.0022 9 7 3.0947 -3.5119 0.0021 10 6 4.5555 -3.2671 0.0022 11 6 5.1313 -4.3350 -0.9518 12 1 6.1111 -4.6842 -0.6259 13 6 5.1698 -3.7796 -2.3894 14 6 4.6241 -4.9218 -3.2657 15 6 3.5142 -5.5436 -2.3831 16 6 4.0817 -5.4745 -0.9514 17 6 4.6883 -6.8097 -0.5150 18 7 3.6528 -7.8458 -0.5339 19 6 3.9639 -9.1313 -0.1790 20 1 4.9726 -9.3812 0.1152 21 6 2.9827 -10.1129 -0.1964 22 7 1.7533 -9.8084 -0.5544 23 14 3.4070 -11.8664 0.2884 24 1 3.9092 -11.8858 1.6858 25 1 2.1929 -12.7155 0.1875 26 1 4.4560 -12.3915 -0.6220 27 6 2.9707 -4.9879 0.0037 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8903 -0.5133 31 1 4.9621 -3.3952 1.0054 32 1 4.7731 -2.2667 -0.3719 33 1 4.5141 -2.9137 -2.4810 34 1 6.1901 -3.5175 -2.6694 35 1 5.4124 -5.6481 -3.4636 36 1 4.2082 -4.5415 -4.1986 37 1 3.3330 -6.5790 -2.6716 38 1 2.5965 -4.9602 -2.4577 39 1 5.4906 -7.0853 -1.1995 40 1 5.0885 -6.7143 0.4943 41 1 2.7467 -7.6213 -0.7977 42 1 1.0677 -10.4944 -0.5669 43 1 1.9912 -5.2871 -0.3693 44 1 3.1315 -5.3833 1.0066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112591190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:22 Heat of formation + Delta-G solvation = 77.279253 kcal Electronic energy + Delta-G solvation = -27842.362272 eV Core-core repulsion = 23992.515899 eV Total energy + Delta-G solvation = -3849.846373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.02921 -41.89421 -39.94540 -36.64929 -36.31023 -35.95934 -35.49610 -33.45819 -31.22727 -31.08892 -30.30591 -27.99696 -26.67969 -26.30557 -25.00028 -23.90462 -23.43577 -21.41690 -21.24266 -20.20405 -20.06599 -19.34326 -18.68326 -18.09039 -17.25457 -16.96981 -16.55193 -16.16493 -15.83742 -15.30156 -15.17942 -15.04100 -14.88713 -14.75522 -14.46584 -14.45075 -14.25028 -13.83105 -13.42864 -13.14231 -13.00079 -12.92131 -12.72960 -12.62824 -12.32855 -12.22953 -12.05712 -11.96720 -11.90511 -11.75420 -11.71494 -11.51069 -11.46534 -11.42540 -11.37523 -10.90086 -9.95906 -8.95837 -7.91895 -5.20242 -0.44600 0.18191 1.26178 1.48559 1.51098 1.57128 1.67931 2.18661 2.32059 2.57573 2.64834 3.23382 3.38341 3.41668 3.50027 3.55592 3.59750 4.02216 4.09857 4.18480 4.23000 4.27365 4.31969 4.38412 4.52944 4.55366 4.59519 4.63571 4.66132 4.69225 4.88343 4.90261 4.94707 5.01470 5.05411 5.10632 5.20518 5.25808 5.36236 5.38785 5.46544 5.53190 6.18189 6.29445 6.61650 7.29885 7.36543 8.12788 8.35095 9.31307 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.003260 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.732289 B = 8586.944039 C = 9293.893853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.066 3.934 3 N -0.360 5.360 4 O 0.352 5.648 5 N -0.312 5.312 6 C -0.050 4.050 7 C 0.617 3.383 8 O -0.546 6.546 9 N -0.598 5.598 10 C 0.098 3.902 11 C -0.089 4.089 12 H 0.119 0.881 13 C -0.104 4.104 14 C -0.117 4.117 15 C -0.111 4.111 16 C -0.067 4.067 17 C 0.176 3.824 18 N -0.742 5.742 19 C -0.242 4.242 20 H 0.078 0.922 21 C -0.075 4.075 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.278 1.278 25 H -0.299 1.299 26 H -0.278 1.278 27 C 0.128 3.872 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.032 0.968 40 H 0.029 0.971 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.060 0.940 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 22.757 -1.047 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.086 5.086 4 O 0.124 5.876 5 N -0.031 5.031 6 C -0.214 4.214 7 C 0.403 3.597 8 O -0.423 6.423 9 N -0.330 5.330 10 C -0.024 4.024 11 C -0.108 4.108 12 H 0.137 0.863 13 C -0.142 4.142 14 C -0.154 4.154 15 C -0.149 4.149 16 C -0.069 4.069 17 C 0.049 3.951 18 N -0.385 5.385 19 C -0.373 4.373 20 H 0.096 0.904 21 C -0.267 4.267 22 N -0.621 5.621 23 Si 0.800 3.200 24 H -0.204 1.204 25 H -0.226 1.226 26 H -0.204 1.204 27 C 0.006 3.994 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.398 23.182 -0.974 24.068 hybrid contribution -1.318 -1.939 0.230 2.356 sum 5.081 21.243 -0.744 21.855 Atomic orbital electron populations 1.20490 0.81295 1.05846 1.05785 1.26591 1.01346 0.84359 0.97650 1.75090 0.91061 1.23746 1.18717 1.85053 1.23388 1.16443 1.62682 1.75344 1.22463 0.92859 1.12447 1.25753 0.88985 0.97327 1.09344 1.16197 0.84162 0.81831 0.77492 1.90829 1.19534 1.79924 1.51974 1.48766 1.07828 1.06693 1.69757 1.22965 0.77202 1.01045 1.01175 1.22788 0.99006 0.92815 0.96226 0.86277 1.22189 1.02128 0.97127 0.92728 1.22282 0.97350 0.97914 0.97855 1.22346 0.98109 1.00343 0.94074 1.22158 0.94780 0.95037 0.94904 1.20683 0.91003 0.85713 0.97696 1.42560 1.09053 1.05478 1.81397 1.19595 0.95170 0.86679 1.35895 0.90395 1.25525 0.95648 1.02055 1.03503 1.69815 1.02113 1.33798 1.56329 0.85250 0.76318 0.80138 0.78276 1.20440 1.22571 1.20371 1.22313 0.99567 0.77464 1.00059 0.87500 0.87141 0.89007 0.89198 0.87408 0.92607 0.88649 0.91185 0.91038 0.93088 0.93325 0.95017 0.95349 0.79419 0.94181 0.92153 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.22 71.24 0.73 -0.42 16 2 C 0.07 1.32 7.79 45.18 0.35 1.68 16 3 N -0.36 -6.98 12.22 -51.80 -0.63 -7.62 16 4 O 0.35 6.64 11.65 140.86 1.64 8.29 16 5 N -0.31 -6.42 9.64 -52.07 -0.50 -6.92 16 6 C -0.05 -1.17 7.38 44.29 0.33 -0.85 16 7 C 0.62 18.10 7.94 86.92 0.69 18.79 16 8 O -0.55 -19.25 16.22 -3.72 -0.06 -19.31 16 9 N -0.60 -16.63 3.31 -811.12 -2.69 -19.31 16 10 C 0.10 2.05 6.06 86.52 0.52 2.58 16 11 C -0.09 -1.91 3.53 -9.29 -0.03 -1.94 16 12 H 0.12 2.14 7.88 -2.39 -0.02 2.12 16 13 C -0.10 -2.03 6.24 31.31 0.20 -1.83 16 14 C -0.12 -2.79 6.86 31.55 0.22 -2.57 16 15 C -0.11 -3.51 5.59 31.62 0.18 -3.34 16 16 C -0.07 -2.03 0.62 -50.66 -0.03 -2.06 16 17 C 0.18 6.48 5.19 86.38 0.45 6.93 16 18 N -0.74 -36.37 4.93 -343.45 -1.69 -38.06 16 19 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 20 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 22 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 23 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.13 4.22 5.49 86.54 0.47 4.70 16 28 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.64 7.31 -2.39 -0.02 1.62 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.11 2.03 5.27 -2.39 -0.01 2.02 16 33 H 0.06 1.13 7.64 -2.39 -0.02 1.12 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.96 7.14 -2.39 -0.02 1.94 16 38 H 0.05 1.62 7.58 -2.39 -0.02 1.60 16 39 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.37 19.90 6.87 -92.71 -0.64 19.27 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.06 2.35 7.44 -2.39 -0.02 2.34 16 44 H 0.07 2.50 7.98 -2.39 -0.02 2.48 16 Total: -1.00 -66.91 356.67 4.15 -62.76 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.40 Total: 25.98 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 5.37 Total: 5.50 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -5.23 Total: -131.19 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 1.58 Total: -11.02 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -66.91 4.15 -62.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112591190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.038 kcal (2) G-P(sol) polarization free energy of solvation -66.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds