Wall clock time and date at job start Tue Mar 31 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47214 * 2 1 4 4 C 1.38603 * 119.54954 * 124.99851 * 3 2 1 5 5 C 1.38587 * 119.34759 * 180.02562 * 4 3 2 6 6 C 1.38630 * 118.48820 * 0.28013 * 5 4 3 7 7 C 1.39274 * 119.06365 * 359.47638 * 6 5 4 8 8 C 1.48159 * 119.72373 * 180.23366 * 7 6 5 9 9 O 1.21512 * 120.00111 * 0.29790 * 8 7 6 10 10 N 1.34780 * 120.00149 * 180.29620 * 8 7 6 11 11 C 1.46496 * 120.00047 * 179.97438 * 10 8 7 12 12 C 1.53009 * 109.46806 * 180.02562 * 11 10 8 13 13 N 1.46904 * 109.46897 * 180.02562 * 12 11 10 14 14 C 1.46895 * 110.99811 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46983 * 179.97438 * 14 13 12 16 16 O 1.21287 * 120.00018 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99953 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99978 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00173 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99858 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00253 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47405 * 60.00040 * 22 20 18 24 24 H 1.48506 * 109.47463 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47384 * 299.99951 * 22 20 18 26 26 N 1.31492 * 119.54668 * 305.02227 * 3 2 1 27 27 H 1.09005 * 109.46975 * 299.99987 * 1 2 3 28 28 H 1.08995 * 109.47401 * 60.00185 * 1 2 3 29 29 H 1.09005 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47427 * 239.99979 * 2 1 3 31 31 H 1.09004 * 109.46815 * 119.99843 * 2 1 3 32 32 H 1.08000 * 120.32317 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.75096 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.46712 * 179.70209 * 6 5 4 35 35 H 0.97001 * 119.99600 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47213 * 299.99985 * 11 10 8 37 37 H 1.09000 * 109.47442 * 60.00577 * 11 10 8 38 38 H 1.09000 * 109.47036 * 299.99866 * 12 11 10 39 39 H 1.08995 * 109.46824 * 60.00454 * 12 11 10 40 40 H 1.00895 * 110.99801 * 56.04064 * 13 12 11 41 41 H 1.09002 * 109.47363 * 299.99937 * 14 13 12 42 42 H 1.09003 * 109.47127 * 60.00060 * 14 13 12 43 43 H 0.97001 * 119.99968 * 359.97438 * 17 15 14 44 44 H 0.97003 * 119.99733 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9122 1.8348 0.9877 5 6 3.3712 3.1425 0.9840 6 6 2.9250 3.9970 -0.0123 7 6 2.0446 3.5113 -0.9760 8 6 1.5626 4.4105 -2.0504 9 8 1.9397 5.5649 -2.0913 10 7 0.7059 3.9480 -2.9824 11 6 0.2289 4.8373 -4.0444 12 6 -0.7253 4.0698 -4.9618 13 7 -1.2032 4.9613 -6.0272 14 6 -2.1243 4.2572 -6.9291 15 6 -2.5929 5.2016 -8.0060 16 8 -2.1980 6.3483 -8.0209 17 7 -3.4500 4.7717 -8.9531 18 6 -3.8759 5.6307 -9.9330 19 1 -3.5242 6.6518 -9.9463 20 6 -4.7599 5.1877 -10.9092 21 7 -5.1883 3.9454 -10.8927 22 14 -5.3407 6.3583 -12.2439 23 1 -4.1708 6.8488 -13.0156 24 1 -6.2725 5.6466 -13.1555 25 1 -6.0414 7.5103 -11.6216 26 7 1.6296 2.2510 -0.9368 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2370 1.1450 1.7527 33 1 4.0569 3.4892 1.7430 34 1 3.2584 5.0238 -0.0428 35 1 0.4046 3.0266 -2.9495 36 1 -0.2959 5.6836 -3.6012 37 1 1.0781 5.1993 -4.6240 38 1 -0.2010 3.2232 -5.4050 39 1 -1.5745 3.7082 -4.3820 40 1 -0.4304 5.3604 -6.5384 41 1 -1.6102 3.4114 -7.3856 42 1 -2.9834 3.8975 -6.3627 43 1 -3.7650 3.8543 -8.9418 44 1 -5.8052 3.6361 -11.5744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129583849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:09 Heat of formation + Delta-G solvation = -44.033269 kcal Electronic energy + Delta-G solvation = -24931.454852 eV Core-core repulsion = 21076.347973 eV Total energy + Delta-G solvation = -3855.106879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.06526 -39.35829 -38.29866 -36.32222 -34.66983 -34.42279 -33.76954 -32.93175 -31.22616 -30.48754 -29.33501 -26.32626 -25.21781 -24.64106 -23.68197 -22.18698 -21.76409 -20.90239 -19.27224 -18.36830 -17.87985 -16.97657 -16.47810 -16.22857 -15.96210 -15.75147 -15.43943 -15.24195 -14.74234 -14.55343 -14.33216 -14.22709 -13.97425 -13.76274 -13.54928 -13.35588 -13.13103 -12.74302 -12.47139 -12.35990 -11.91409 -11.90221 -11.55990 -11.51061 -11.44591 -11.40464 -11.00116 -10.58381 -10.43164 -10.39728 -10.20495 -9.90489 -9.49998 -9.49264 -9.20211 -8.48861 -8.11153 -7.95591 -6.40914 -3.81724 0.23592 0.73752 2.43935 2.77668 3.21372 3.26880 3.31627 3.45412 3.58719 3.91195 4.08719 4.14196 4.30757 4.46145 4.51042 4.60153 4.77063 4.85240 4.90369 4.93294 4.99761 5.02251 5.19576 5.27196 5.32803 5.42218 5.45356 5.50208 5.62481 5.67536 5.74615 5.84630 5.86061 5.91820 5.96334 6.11537 6.19569 6.27302 7.09984 7.16022 7.43232 7.56035 7.59170 7.94514 8.06736 8.61904 9.18545 9.54679 10.06204 10.76729 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.001750 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.837137 B =15995.800926 C =16996.971895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C 0.130 3.870 4 C -0.150 4.150 5 C -0.078 4.078 6 C -0.118 4.118 7 C 0.086 3.914 8 C 0.570 3.430 9 O -0.530 6.530 10 N -0.707 5.707 11 C 0.118 3.882 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.932 3.068 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 N -0.457 5.457 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.410 0.590 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.078 0.922 40 H 0.352 0.648 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.223 -11.967 25.099 31.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.011 4.011 4 C -0.170 4.170 5 C -0.104 4.104 6 C -0.139 4.139 7 C -0.052 4.052 8 C 0.354 3.646 9 O -0.406 6.406 10 N -0.359 5.359 11 C -0.005 4.005 12 C -0.081 4.081 13 N -0.299 5.299 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.759 3.241 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 N -0.169 5.169 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.246 0.754 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.172 0.828 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.511 -10.433 24.598 30.405 hybrid contribution 0.527 -0.827 -0.471 1.088 sum 15.038 -11.259 24.127 30.578 Atomic orbital electron populations 1.21694 0.93777 1.02058 1.02829 1.20523 0.97314 0.89846 1.03405 1.21324 0.93354 0.96164 0.90228 1.22233 0.98083 0.96997 0.99713 1.21644 0.97984 0.93152 0.97613 1.22143 0.96127 1.01944 0.93663 1.21129 0.96900 0.91025 0.96158 1.17830 0.79200 0.86385 0.81178 1.90816 1.57722 1.17349 1.74713 1.45738 1.46199 1.16014 1.27901 1.21364 0.97708 0.93216 0.88260 1.22073 0.97784 0.94212 0.93993 1.59924 1.21635 1.33564 1.14740 1.21670 0.97110 0.95156 0.94091 1.19779 0.84235 0.88993 0.84461 1.90531 1.60261 1.19392 1.76434 1.41847 1.40141 1.13691 1.24300 1.19665 1.23981 0.95602 1.03703 0.87936 1.25266 0.97004 0.96683 0.98999 1.69607 1.33423 1.15397 1.35923 0.85904 0.78561 0.79674 0.79996 1.19917 1.20991 1.19872 1.67296 1.22964 1.02659 1.23973 0.92868 0.91398 0.92075 0.89688 0.90170 0.84249 0.83932 0.83326 0.75394 0.89883 0.91057 0.94797 0.90343 0.82808 0.93682 0.89434 0.77443 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.77 37.16 0.36 -0.44 16 2 C -0.07 -0.36 6.33 -27.88 -0.18 -0.54 16 3 C 0.13 0.94 6.18 -82.60 -0.51 0.43 16 4 C -0.15 -0.85 9.72 -39.32 -0.38 -1.24 16 5 C -0.08 -0.47 10.17 -39.31 -0.40 -0.87 16 6 C -0.12 -1.02 9.63 -39.05 -0.38 -1.40 16 7 C 0.09 0.90 6.75 -83.01 -0.56 0.34 16 8 C 0.57 7.14 7.81 -12.18 -0.10 7.04 16 9 O -0.53 -8.23 16.32 5.36 0.09 -8.15 16 10 N -0.71 -7.77 5.55 -61.15 -0.34 -8.11 16 11 C 0.12 1.43 5.93 -4.04 -0.02 1.40 16 12 C 0.05 0.59 5.80 -3.82 -0.02 0.57 16 13 N -0.67 -10.74 6.12 -115.05 -0.70 -11.44 16 14 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 15 C 0.44 10.46 7.82 -10.98 -0.09 10.37 16 16 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 17 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 18 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 22 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 N -0.46 -4.27 9.05 -6.06 -0.05 -4.33 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.24 7.87 -51.93 -0.41 -0.17 16 32 H 0.14 0.39 7.95 -52.49 -0.42 -0.03 16 33 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 34 H 0.15 1.24 7.64 -52.49 -0.40 0.84 16 35 H 0.41 3.82 7.80 -40.82 -0.32 3.50 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.35 5.87 8.43 -39.29 -0.33 5.54 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -34.05 381.63 -8.42 -42.47 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -6.35 Total: 13.33 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -2.54 Total: 8.49 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.43 Total: -62.15 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.18 Total: -24.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.05 -8.42 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129583849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.563 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds