Wall clock time and date at job start Tue Mar 31 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47214 * 2 1 4 4 C 1.38603 * 119.54954 * 124.99851 * 3 2 1 5 5 C 1.38587 * 119.34759 * 180.02562 * 4 3 2 6 6 C 1.38630 * 118.48820 * 0.28013 * 5 4 3 7 7 C 1.39274 * 119.06365 * 359.47638 * 6 5 4 8 8 C 1.48159 * 119.72373 * 180.23366 * 7 6 5 9 9 O 1.21512 * 120.00111 * 0.29790 * 8 7 6 10 10 N 1.34780 * 120.00149 * 180.29620 * 8 7 6 11 11 C 1.46496 * 120.00047 * 179.97438 * 10 8 7 12 12 C 1.53009 * 109.46806 * 180.02562 * 11 10 8 13 13 N 1.46904 * 109.46897 * 180.02562 * 12 11 10 14 14 C 1.46895 * 110.99811 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46983 * 179.97438 * 14 13 12 16 16 O 1.21287 * 120.00018 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99953 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99978 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00173 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99858 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00253 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47405 * 60.00040 * 22 20 18 24 24 H 1.48506 * 109.47463 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47384 * 299.99951 * 22 20 18 26 26 N 1.31492 * 119.54668 * 305.02227 * 3 2 1 27 27 H 1.09005 * 109.46975 * 299.99987 * 1 2 3 28 28 H 1.08995 * 109.47401 * 60.00185 * 1 2 3 29 29 H 1.09005 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47427 * 239.99979 * 2 1 3 31 31 H 1.09004 * 109.46815 * 119.99843 * 2 1 3 32 32 H 1.08000 * 120.32317 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.75096 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.46712 * 179.70209 * 6 5 4 35 35 H 0.97001 * 119.99600 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47213 * 299.99985 * 11 10 8 37 37 H 1.09000 * 109.47442 * 60.00577 * 11 10 8 38 38 H 1.09000 * 109.47036 * 299.99866 * 12 11 10 39 39 H 1.08995 * 109.46824 * 60.00454 * 12 11 10 40 40 H 1.00895 * 110.99801 * 56.04064 * 13 12 11 41 41 H 1.09002 * 109.47363 * 299.99937 * 14 13 12 42 42 H 1.09003 * 109.47127 * 60.00060 * 14 13 12 43 43 H 0.97001 * 119.99968 * 359.97438 * 17 15 14 44 44 H 0.97003 * 119.99733 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9122 1.8348 0.9877 5 6 3.3712 3.1425 0.9840 6 6 2.9250 3.9970 -0.0123 7 6 2.0446 3.5113 -0.9760 8 6 1.5626 4.4105 -2.0504 9 8 1.9397 5.5649 -2.0913 10 7 0.7059 3.9480 -2.9824 11 6 0.2289 4.8373 -4.0444 12 6 -0.7253 4.0698 -4.9618 13 7 -1.2032 4.9613 -6.0272 14 6 -2.1243 4.2572 -6.9291 15 6 -2.5929 5.2016 -8.0060 16 8 -2.1980 6.3483 -8.0209 17 7 -3.4500 4.7717 -8.9531 18 6 -3.8759 5.6307 -9.9330 19 1 -3.5242 6.6518 -9.9463 20 6 -4.7599 5.1877 -10.9092 21 7 -5.1883 3.9454 -10.8927 22 14 -5.3407 6.3583 -12.2439 23 1 -4.1708 6.8488 -13.0156 24 1 -6.2725 5.6466 -13.1555 25 1 -6.0414 7.5103 -11.6216 26 7 1.6296 2.2510 -0.9368 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2370 1.1450 1.7527 33 1 4.0569 3.4892 1.7430 34 1 3.2584 5.0238 -0.0428 35 1 0.4046 3.0266 -2.9495 36 1 -0.2959 5.6836 -3.6012 37 1 1.0781 5.1993 -4.6240 38 1 -0.2010 3.2232 -5.4050 39 1 -1.5745 3.7082 -4.3820 40 1 -0.4304 5.3604 -6.5384 41 1 -1.6102 3.4114 -7.3856 42 1 -2.9834 3.8975 -6.3627 43 1 -3.7650 3.8543 -8.9418 44 1 -5.8052 3.6361 -11.5744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129583849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:09 Heat of formation + Delta-G solvation = -70.830566 kcal Electronic energy + Delta-G solvation = -24932.616870 eV Core-core repulsion = 21076.347973 eV Total energy + Delta-G solvation = -3856.268897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73915 -40.28651 -40.08663 -37.54268 -36.02454 -35.33149 -35.13590 -33.55712 -33.26136 -31.11528 -30.44204 -27.82883 -26.19592 -25.50876 -24.87076 -23.16067 -22.32486 -21.75009 -21.10526 -19.92681 -19.18699 -17.78895 -17.66303 -17.29261 -17.03005 -16.65222 -16.60226 -16.38984 -16.01975 -15.75810 -15.54530 -15.21009 -15.02373 -14.84390 -14.63235 -14.32764 -14.13330 -13.94052 -13.52152 -13.33588 -13.23937 -12.94212 -12.87972 -12.62967 -12.46212 -12.42765 -12.37344 -12.12200 -11.94536 -11.50808 -11.48475 -10.92893 -10.54579 -10.37306 -10.31092 -10.02136 -9.96671 -9.41180 -8.46850 -5.95648 -0.39733 0.21390 1.39957 1.41963 1.52817 1.62961 1.86555 2.04654 2.30048 2.79618 2.88035 3.07843 3.20314 3.52629 3.64270 3.79046 3.88689 4.00041 4.07139 4.08408 4.30866 4.39435 4.40975 4.43297 4.48855 4.50231 4.56003 4.59647 4.83915 4.87719 4.89655 5.04789 5.10669 5.13843 5.22147 5.27270 5.40697 5.44335 5.63147 5.82101 6.05471 6.29955 6.31182 6.59783 6.77056 7.04587 7.12192 7.55552 8.11166 8.70202 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.001750 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.837137 B =15995.800926 C =16996.971895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C 0.116 3.884 4 C -0.137 4.137 5 C -0.074 4.074 6 C -0.129 4.129 7 C 0.058 3.942 8 C 0.565 3.435 9 O -0.571 6.571 10 N -0.697 5.697 11 C 0.126 3.874 12 C 0.060 3.940 13 N -0.684 5.684 14 C 0.068 3.932 15 C 0.435 3.565 16 O -0.625 6.625 17 N -0.571 5.571 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.273 1.273 26 N -0.471 5.471 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.142 0.858 35 H 0.420 0.580 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.347 0.653 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.398 0.602 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.737 -14.352 26.657 34.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.025 4.025 4 C -0.157 4.157 5 C -0.099 4.099 6 C -0.150 4.150 7 C -0.079 4.079 8 C 0.351 3.649 9 O -0.450 6.450 10 N -0.348 5.348 11 C 0.001 3.999 12 C -0.070 4.070 13 N -0.317 5.317 14 C -0.065 4.065 15 C 0.223 3.777 16 O -0.511 6.511 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.198 1.198 26 N -0.183 5.183 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.195 0.805 33 H 0.193 0.807 34 H 0.160 0.840 35 H 0.257 0.743 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.165 0.835 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.232 0.768 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.010 -12.876 26.168 32.800 hybrid contribution 0.415 -0.156 -0.843 0.952 sum 15.425 -13.031 25.326 32.390 Atomic orbital electron populations 1.21679 0.94416 1.02502 1.01724 1.20616 0.96692 0.88631 1.04860 1.21867 0.93660 0.96831 0.90158 1.22685 0.96292 0.97276 0.99426 1.22031 0.97785 0.92935 0.97164 1.22262 0.96174 1.02313 0.94286 1.20865 0.98857 0.91568 0.96589 1.18279 0.78724 0.86273 0.81593 1.90778 1.59261 1.19131 1.75858 1.45623 1.45706 1.16217 1.27268 1.21166 0.97289 0.93029 0.88367 1.22040 0.98307 0.93843 0.92763 1.59889 1.21759 1.34969 1.15088 1.21532 0.98371 0.93963 0.92606 1.20897 0.82686 0.89363 0.84772 1.90500 1.61377 1.21735 1.77528 1.41908 1.40817 1.13629 1.24528 1.19636 1.25808 0.95380 1.05760 0.90388 1.26038 0.96411 0.98309 1.00470 1.69663 1.33388 1.16351 1.36558 0.84986 0.78193 0.77748 0.77386 1.19718 1.19369 1.19833 1.67231 1.23544 1.02358 1.25192 0.93299 0.93184 0.90842 0.89536 0.87353 0.80513 0.80678 0.83981 0.74270 0.91751 0.91912 0.92627 0.88978 0.83453 0.90919 0.87317 0.76843 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.77 71.98 0.70 -0.65 16 2 C -0.07 -0.51 6.33 29.85 0.19 -0.33 16 3 C 0.12 1.43 6.18 42.70 0.26 1.70 16 4 C -0.14 -1.10 9.72 22.44 0.22 -0.88 16 5 C -0.07 -0.71 10.17 22.45 0.23 -0.48 16 6 C -0.13 -2.20 9.63 22.61 0.22 -1.98 16 7 C 0.06 1.24 6.75 41.89 0.28 1.52 16 8 C 0.57 14.80 7.81 86.88 0.68 15.48 16 9 O -0.57 -18.86 16.32 -3.75 -0.06 -18.92 16 10 N -0.70 -15.56 5.55 -465.66 -2.58 -18.14 16 11 C 0.13 3.09 5.93 86.38 0.51 3.60 16 12 C 0.06 1.35 5.80 86.31 0.50 1.85 16 13 N -0.68 -21.67 6.12 -517.92 -3.17 -24.84 16 14 C 0.07 2.27 6.17 85.56 0.53 2.80 16 15 C 0.44 20.90 7.82 87.66 0.69 21.58 16 16 O -0.62 -35.32 15.78 -3.05 -0.05 -35.37 16 17 N -0.57 -29.48 5.29 -306.99 -1.62 -31.10 16 18 C -0.34 -19.30 9.68 84.04 0.81 -18.48 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 21 N -0.92 -49.61 13.05 21.66 0.28 -49.32 16 22 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 26 N -0.47 -8.49 9.05 -173.08 -1.57 -10.06 16 27 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.05 0.64 7.94 -2.39 -0.02 0.62 16 29 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.11 0.19 7.87 -2.38 -0.02 0.17 16 32 H 0.18 0.07 7.95 -2.91 -0.02 0.04 16 33 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.14 2.50 7.64 -2.91 -0.02 2.47 16 35 H 0.42 7.66 7.80 -92.71 -0.72 6.94 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.35 11.63 8.43 -89.70 -0.76 10.87 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.40 19.28 7.90 -92.71 -0.73 18.54 16 44 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -76.36 381.63 -1.62 -77.98 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -1.16 Total: 38.94 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 6.29 Total: 25.54 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -8.66 Total: -133.47 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -0.11 Total: -54.29 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -76.36 -1.62 -77.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129583849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.149 kcal (2) G-P(sol) polarization free energy of solvation -76.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds