Wall clock time and date at job start Tue Mar 31 2020 05:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47758 * 2 1 4 4 C 1.38351 * 120.34372 * 270.04508 * 3 2 1 5 5 N 1.31933 * 121.07487 * 179.97438 * 4 3 2 6 6 C 1.31694 * 121.87963 * 359.97438 * 5 4 3 7 7 C 1.39523 * 120.56847 * 359.97438 * 6 5 4 8 8 C 1.47836 * 120.55742 * 180.02562 * 7 6 5 9 9 O 1.21553 * 119.99786 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99999 * 359.97438 * 8 7 6 11 11 C 1.46506 * 119.99694 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46965 * 180.02562 * 11 10 8 13 13 N 1.46896 * 109.47167 * 179.97438 * 12 11 10 14 14 C 1.46903 * 111.00129 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.46874 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00473 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99688 * 179.97438 * 15 14 13 18 18 C 1.37103 * 120.00288 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99620 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00455 * 180.02562 * 18 17 15 21 21 N 1.31421 * 119.99661 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00448 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46797 * 89.99428 * 22 20 18 24 24 H 1.48497 * 109.47635 * 209.99591 * 22 20 18 25 25 H 1.48504 * 109.46931 * 330.00237 * 22 20 18 26 26 C 1.38357 * 120.34826 * 89.99641 * 3 2 1 27 27 H 1.08997 * 109.46760 * 300.00684 * 1 2 3 28 28 H 1.09000 * 109.46917 * 59.99947 * 1 2 3 29 29 H 1.08990 * 109.47449 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47197 * 239.99161 * 2 1 3 31 31 H 1.09000 * 109.46917 * 120.00053 * 2 1 3 32 32 H 1.08000 * 119.46728 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.71060 * 179.97438 * 6 5 4 34 34 H 0.96995 * 120.00170 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.47035 * 299.99496 * 11 10 8 36 36 H 1.08995 * 109.47163 * 60.00083 * 11 10 8 37 37 H 1.08996 * 109.46948 * 299.99874 * 12 11 10 38 38 H 1.09007 * 109.46738 * 59.99862 * 12 11 10 39 39 H 1.00902 * 110.99901 * 56.04454 * 13 12 11 40 40 H 1.08996 * 109.46893 * 300.00634 * 14 13 12 41 41 H 1.08997 * 109.46582 * 60.00252 * 14 13 12 42 42 H 0.96999 * 120.00435 * 0.02562 * 17 15 14 43 43 H 0.97005 * 119.99521 * 180.02562 * 21 20 18 44 44 H 1.07994 * 120.85854 * 0.04271 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2647 2.0800 -1.1940 5 7 2.7041 3.3239 -1.2108 6 6 2.9406 3.9931 -0.1015 7 6 2.7305 3.3996 1.1436 8 6 2.9956 4.1512 2.3888 9 8 2.8086 3.6244 3.4681 10 7 3.4445 5.4205 2.3271 11 6 3.7076 6.1651 3.5611 12 6 4.2038 7.5700 3.2131 13 7 4.4672 8.3168 4.4503 14 6 4.9469 9.6734 4.1544 15 6 5.2062 10.4071 5.4449 16 8 5.0111 9.8542 6.5067 17 7 5.6560 11.6773 5.4193 18 6 5.8924 12.3447 6.5933 19 1 5.7187 11.8524 7.5387 20 6 6.3556 13.6544 6.5669 21 7 6.5676 14.2533 5.4164 22 14 6.6771 14.5640 8.1664 23 1 8.0823 14.3380 8.5905 24 1 6.4487 16.0173 7.9641 25 1 5.7560 14.0595 9.2164 26 6 2.2655 2.0798 1.1940 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0833 1.5681 -2.1275 33 1 3.3002 5.0099 -0.1561 34 1 3.5933 5.8410 1.4658 35 1 2.7895 6.2386 4.1440 36 1 4.4676 5.6451 4.1442 37 1 5.1218 7.4970 2.6300 38 1 3.4434 8.0898 2.6301 39 1 5.1211 7.8226 5.0387 40 1 5.8704 9.6146 3.5784 41 1 4.1922 10.2078 3.5775 42 1 5.8125 12.1194 4.5702 43 1 6.8913 15.1676 5.3980 44 1 2.0927 1.5892 2.1404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131374640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:15 Heat of formation + Delta-G solvation = -72.462221 kcal Electronic energy + Delta-G solvation = -24667.695190 eV Core-core repulsion = 20811.355539 eV Total energy + Delta-G solvation = -3856.339651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76925 -40.30038 -40.09156 -37.51970 -36.05732 -35.80015 -35.22423 -33.40500 -33.24440 -31.09398 -30.22306 -27.78318 -26.08074 -25.46028 -24.80721 -23.17829 -23.02355 -21.37067 -21.10016 -19.92138 -18.92306 -18.04538 -17.85975 -17.50941 -17.23790 -16.72703 -16.58253 -16.33967 -15.98539 -15.69889 -15.44298 -15.08050 -14.96045 -14.71901 -14.65286 -14.32646 -14.14315 -14.00210 -13.66907 -13.51189 -13.31488 -13.16706 -12.93721 -12.60204 -12.45815 -12.44005 -12.40574 -12.12166 -11.90282 -11.50765 -11.42816 -10.92504 -10.50688 -10.36500 -10.30263 -10.01343 -9.99743 -9.38390 -8.46812 -5.95434 -0.44727 0.12177 1.38218 1.42382 1.54893 1.71640 1.85782 2.05551 2.30329 2.75559 2.99315 3.20721 3.25313 3.52503 3.61012 3.75041 3.78513 3.86370 3.89717 4.06748 4.10703 4.32124 4.35202 4.45921 4.47066 4.50931 4.52782 4.61931 4.81636 4.86327 4.91057 4.92864 4.96736 5.11155 5.22036 5.31273 5.36043 5.41234 5.54102 5.84197 6.06931 6.32368 6.36267 6.60330 6.78640 7.03791 7.12910 7.56440 8.12120 8.70420 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.045006 B = 0.001545 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.991199 B =18114.789088 C =18611.197544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.136 4.136 4 C 0.123 3.877 5 N -0.502 5.502 6 C 0.131 3.869 7 C -0.195 4.195 8 C 0.562 3.438 9 O -0.577 6.577 10 N -0.705 5.705 11 C 0.127 3.873 12 C 0.057 3.943 13 N -0.686 5.686 14 C 0.068 3.932 15 C 0.435 3.565 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.275 1.275 26 C -0.029 4.029 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.188 0.812 33 H 0.183 0.817 34 H 0.417 0.583 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.346 0.654 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.398 0.602 43 H 0.278 0.722 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 -24.866 -20.017 32.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.138 4.138 4 C -0.033 4.033 5 N -0.209 5.209 6 C -0.027 4.027 7 C -0.200 4.200 8 C 0.349 3.651 9 O -0.458 6.458 10 N -0.358 5.358 11 C 0.003 3.997 12 C -0.072 4.072 13 N -0.319 5.319 14 C -0.064 4.064 15 C 0.222 3.778 16 O -0.512 6.512 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.056 4.056 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.205 0.795 33 H 0.200 0.800 34 H 0.255 0.745 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.165 0.835 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.762 -24.753 -19.324 32.603 hybrid contribution 1.099 0.579 0.903 1.536 sum -7.663 -24.175 -18.421 31.344 Atomic orbital electron populations 1.21772 0.94082 1.02850 1.01880 1.20573 0.96487 0.89861 1.04754 1.21163 1.00385 0.99324 0.92891 1.23429 0.91165 0.89813 0.98894 1.67797 1.12748 1.09425 1.30970 1.23289 0.93053 1.00360 0.86039 1.20893 1.07991 0.96884 0.94239 1.18342 0.76480 0.81746 0.88521 1.90788 1.53860 1.69714 1.31402 1.45612 1.66599 1.12923 1.10664 1.21124 1.01186 0.91227 0.86156 1.22087 1.01577 0.92110 0.91428 1.59902 1.52652 1.02212 1.17111 1.21527 1.01192 0.90218 0.93476 1.20946 0.82110 0.82804 0.91905 1.90503 1.58040 1.68530 1.34147 1.41915 1.58278 1.11755 1.08978 1.19670 1.43299 0.96316 0.87298 0.90444 1.26007 0.96325 0.96940 1.01799 1.69670 1.45717 1.14422 1.26147 0.84944 0.78691 0.77379 0.77421 1.19608 1.19479 1.19948 1.21769 0.91649 0.92452 0.99716 0.93766 0.92137 0.90717 0.88230 0.90305 0.79485 0.80041 0.74490 0.91955 0.92101 0.92250 0.88653 0.83518 0.90850 0.87239 0.76838 0.91278 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 71.98 0.71 -0.28 16 2 C -0.08 -0.52 6.08 29.85 0.18 -0.34 16 3 C -0.14 -1.57 5.15 -19.81 -0.10 -1.67 16 4 C 0.12 1.39 10.85 84.70 0.92 2.31 16 5 N -0.50 -7.49 10.35 -194.75 -2.01 -9.50 16 6 C 0.13 1.81 10.71 85.02 0.91 2.72 16 7 C -0.19 -3.41 5.89 -19.99 -0.12 -3.52 16 8 C 0.56 12.43 7.78 86.78 0.68 13.11 16 9 O -0.58 -17.86 16.42 -3.88 -0.06 -17.92 16 10 N -0.71 -11.91 5.51 -465.96 -2.57 -14.48 16 11 C 0.13 2.70 5.93 86.38 0.51 3.22 16 12 C 0.06 1.10 5.80 86.31 0.50 1.61 16 13 N -0.69 -20.32 6.13 -517.94 -3.17 -23.49 16 14 C 0.07 2.18 6.17 85.55 0.53 2.70 16 15 C 0.43 20.39 7.82 87.66 0.69 21.07 16 16 O -0.63 -34.79 15.78 -3.06 -0.05 -34.84 16 17 N -0.57 -28.99 5.29 -306.99 -1.62 -30.62 16 18 C -0.34 -19.10 9.68 84.04 0.81 -18.28 16 19 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 20 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16 21 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 22 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C -0.03 -0.48 9.39 22.73 0.21 -0.27 16 27 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 0.27 8.09 -2.39 -0.02 0.25 16 31 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16 32 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 33 H 0.18 1.39 6.42 -2.91 -0.02 1.37 16 34 H 0.42 4.01 6.54 -92.71 -0.61 3.40 16 35 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.35 11.00 8.43 -89.69 -0.76 10.24 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.40 18.92 7.90 -92.71 -0.73 18.18 16 43 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 44 H 0.14 2.43 7.74 -2.91 -0.02 2.41 16 Total: -1.00 -76.83 380.06 -1.32 -78.16 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -1.04 Total: 34.33 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 6.90 Total: 22.26 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -9.10 Total: -126.89 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.11 Total: -52.76 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -76.83 -1.32 -78.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131374640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.694 kcal (2) G-P(sol) polarization free energy of solvation -76.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds