Wall clock time and date at job start Tue Mar 31 2020 04:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31883 * 118.95344 * 2 1 4 4 C 1.32132 * 120.96914 * 179.72539 * 3 2 1 5 5 C 1.39975 * 118.91787 * 0.57107 * 4 3 2 6 6 C 1.47841 * 120.93529 * 179.71696 * 5 4 3 7 7 O 1.21550 * 119.99571 * 174.16479 * 6 5 4 8 8 N 1.34773 * 119.99896 * 354.16375 * 6 5 4 9 9 C 1.46504 * 119.99651 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47336 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.47001 * 65.00010 * 10 9 8 12 12 C 1.52995 * 109.47607 * 185.00058 * 10 9 8 13 13 O 1.42908 * 109.46863 * 55.00111 * 12 10 9 14 14 N 1.46505 * 109.47247 * 305.00702 * 10 9 8 15 15 C 1.36934 * 120.00277 * 154.99655 * 14 10 9 16 16 H 1.07999 * 119.99978 * 0.02562 * 15 14 10 17 17 C 1.38805 * 120.00202 * 179.97438 * 15 14 10 18 18 N 1.31624 * 120.00200 * 359.72548 * 17 15 14 19 19 Si 1.86805 * 120.00268 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46895 * 269.72524 * 19 17 15 21 21 H 1.48500 * 109.46697 * 29.72823 * 19 17 15 22 22 H 1.48498 * 109.47047 * 149.72428 * 19 17 15 23 23 C 1.39920 * 118.12330 * 359.45107 * 5 4 3 24 24 C 1.50701 * 120.53754 * 180.29582 * 23 5 4 25 25 C 1.53006 * 117.49534 * 179.73366 * 24 23 5 26 26 C 1.53004 * 117.50203 * 111.11226 * 24 23 5 27 27 N 1.31855 * 118.95156 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47229 * 269.97398 * 1 2 3 29 29 H 1.08998 * 109.47230 * 29.97215 * 1 2 3 30 30 H 1.08998 * 109.47527 * 149.97222 * 1 2 3 31 31 H 1.07996 * 120.54755 * 180.31511 * 4 3 2 32 32 H 0.97002 * 120.00237 * 359.97438 * 8 6 5 33 33 H 1.09008 * 109.47049 * 60.00171 * 9 8 6 34 34 H 1.08997 * 109.47160 * 300.00216 * 9 8 6 35 35 H 1.08999 * 109.47620 * 175.00132 * 12 10 9 36 36 H 1.09000 * 109.47454 * 295.00891 * 12 10 9 37 37 H 0.96696 * 113.99979 * 179.97438 * 13 12 10 38 38 H 0.97004 * 119.99657 * 334.99246 * 14 10 9 39 39 H 0.97005 * 119.99165 * 0.27368 * 18 17 15 40 40 H 1.08993 * 115.54986 * 325.43992 * 24 23 5 41 41 H 1.08992 * 117.50329 * 359.97438 * 25 24 23 42 42 H 1.09003 * 117.49346 * 145.02214 * 25 24 23 43 43 H 1.08992 * 117.50203 * 214.97612 * 26 24 23 44 44 H 1.09005 * 117.49430 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 0.0054 5 6 4.1855 -0.0001 -0.0010 6 6 5.6639 -0.0001 -0.0016 7 8 6.2716 -1.0479 0.0999 8 7 6.3377 1.1616 -0.1146 9 6 7.8027 1.1616 -0.1146 10 6 8.3127 2.5972 -0.2549 11 1 8.0244 3.1728 0.6247 12 6 9.8375 2.5868 -0.3802 13 8 10.2206 1.7376 -1.4639 14 7 7.7285 3.2083 -1.4514 15 6 7.5999 4.5692 -1.5319 16 1 7.9296 5.1921 -0.7136 17 6 7.0468 5.1482 -2.6658 18 7 6.6509 4.3895 -3.6658 19 14 6.8721 7.0048 -2.7760 20 1 5.5504 7.4105 -2.2341 21 1 7.9507 7.6511 -1.9859 22 1 6.9764 7.4284 -4.1954 23 6 3.4661 -1.2002 -0.0011 24 6 4.1856 -2.5244 -0.0011 25 6 3.3304 -3.7931 0.0051 26 6 4.0934 -3.3786 1.2648 27 7 2.1452 -1.1538 -0.0005 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 3.9817 2.1493 0.0105 32 1 5.8526 1.9977 -0.1959 33 1 8.1660 0.5640 -0.9507 34 1 8.1660 0.7363 0.8209 35 1 10.1935 3.5996 -0.5690 36 1 10.2757 2.2142 0.5457 37 1 11.1761 1.6834 -1.6023 38 1 7.4328 2.6488 -2.1866 39 1 6.7420 3.4254 -3.6087 40 1 5.1217 -2.5507 -0.5589 41 1 2.2475 -3.6701 0.0096 42 1 3.7039 -4.6544 -0.5489 43 1 4.9686 -3.9672 1.5397 44 1 3.5126 -2.9827 2.0979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486056544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:39 Heat of formation + Delta-G solvation = 3.208661 kcal Electronic energy + Delta-G solvation = -27026.499028 eV Core-core repulsion = 23173.440713 eV Total energy + Delta-G solvation = -3853.058315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45916 -39.26271 -37.49021 -37.11504 -35.08675 -34.01100 -33.48930 -33.08280 -31.42712 -29.19350 -28.00907 -25.88050 -25.02571 -23.71176 -23.38213 -22.37173 -21.12460 -20.57424 -20.29378 -17.92240 -17.83164 -17.46992 -16.73835 -16.48848 -15.69700 -15.67274 -15.15258 -14.98999 -14.80631 -14.11310 -14.03779 -13.77057 -13.73566 -13.45594 -13.27180 -13.17994 -12.74725 -12.63284 -12.10164 -11.89289 -11.70130 -11.58471 -11.53511 -11.38146 -10.92336 -10.79236 -10.63239 -10.47724 -10.24388 -10.09066 -9.60495 -9.50078 -9.40986 -9.36251 -9.23870 -9.03344 -8.75779 -7.16147 -6.18438 -3.20920 0.37273 0.91257 2.89402 3.27295 3.46125 3.50251 3.54114 3.64439 3.68344 3.86814 3.94197 4.23219 4.57104 4.68327 4.78103 4.81027 4.95427 4.96486 5.04747 5.11504 5.27045 5.32870 5.33328 5.37477 5.49398 5.58536 5.67131 5.72666 5.76345 5.81844 5.88705 5.90040 6.06935 6.15464 6.19790 6.25793 6.34594 6.58056 6.70189 6.83524 7.68516 7.69233 7.92900 8.08306 8.32623 8.67057 9.10661 9.97690 10.12645 11.28880 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.003872 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.366482 B = 7230.387260 C = 9092.542344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.335 3.665 3 N -0.523 5.523 4 C 0.194 3.806 5 C -0.242 4.242 6 C 0.566 3.434 7 O -0.535 6.535 8 N -0.707 5.707 9 C 0.118 3.882 10 C 0.171 3.829 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.562 6.562 14 N -0.725 5.725 15 C -0.342 4.342 16 H 0.065 0.935 17 C -0.038 4.038 18 N -0.937 5.937 19 Si 1.081 2.919 20 H -0.294 1.294 21 H -0.295 1.295 22 H -0.288 1.288 23 C 0.266 3.734 24 C -0.116 4.116 25 C -0.164 4.164 26 C -0.148 4.148 27 N -0.524 5.524 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.176 0.824 32 H 0.407 0.593 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.028 0.972 37 H 0.365 0.635 38 H 0.371 0.629 39 H 0.257 0.743 40 H 0.148 0.852 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 -11.235 10.545 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 N -0.238 5.238 4 C 0.027 3.973 5 C -0.250 4.250 6 C 0.351 3.649 7 O -0.413 6.413 8 N -0.358 5.358 9 C -0.006 4.006 10 C 0.059 3.941 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.366 6.366 14 N -0.368 5.368 15 C -0.473 4.473 16 H 0.083 0.917 17 C -0.237 4.237 18 N -0.581 5.581 19 Si 0.912 3.088 20 H -0.222 1.222 21 H -0.222 1.222 22 H -0.214 1.214 23 C 0.119 3.881 24 C -0.135 4.135 25 C -0.202 4.202 26 C -0.186 4.186 27 N -0.239 5.239 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.193 0.807 32 H 0.244 0.756 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.210 0.790 38 H 0.205 0.795 39 H 0.068 0.932 40 H 0.166 0.834 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.358 -10.592 9.757 16.172 hybrid contribution 2.032 -0.557 0.760 2.240 sum -5.326 -11.149 10.517 16.226 Atomic orbital electron populations 1.20620 0.85369 1.04496 1.03997 1.23491 0.98405 0.83306 0.87855 1.68306 1.09716 1.29947 1.15806 1.23601 0.89604 0.97916 0.86150 1.21567 0.96366 0.95967 1.11104 1.17681 0.85718 0.84275 0.77195 1.90697 1.69388 1.30816 1.50448 1.45917 1.08237 1.08950 1.72723 1.21621 0.78223 0.98680 1.02044 1.20538 0.90161 0.91039 0.92317 0.91473 1.23010 0.98313 0.93429 0.87410 1.86543 1.26939 1.69234 1.53861 1.42387 1.73489 1.04592 1.16323 1.20034 1.39926 0.83053 1.04258 0.91689 1.25742 0.98634 1.06737 0.92542 1.70848 1.49255 1.05599 1.32409 0.83226 0.75725 0.74118 0.75767 1.22202 1.22212 1.21406 1.20930 0.88372 0.93734 0.85056 1.21286 1.01079 0.86169 1.04944 1.23019 0.99521 0.96862 1.00768 1.22848 1.02687 1.01824 0.91229 1.68073 1.09013 1.30145 1.16654 0.89377 0.89216 0.89440 0.80705 0.75628 0.90370 0.91646 0.93188 0.95355 0.78981 0.79474 0.93154 0.83422 0.87589 0.88429 0.87993 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.31 36.00 0.37 -0.42 16 2 C 0.34 4.53 7.64 -157.07 -1.20 3.33 16 3 N -0.52 -7.76 10.31 -10.39 -0.11 -7.87 16 4 C 0.19 2.88 10.80 -16.77 -0.18 2.70 16 5 C -0.24 -3.76 5.91 -104.69 -0.62 -4.38 16 6 C 0.57 9.43 7.75 -12.33 -0.10 9.33 16 7 O -0.53 -9.71 13.56 5.32 0.07 -9.64 16 8 N -0.71 -11.59 5.34 -61.25 -0.33 -11.91 16 9 C 0.12 2.00 5.12 -4.04 -0.02 1.98 16 10 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 11 H 0.07 1.19 8.08 -51.92 -0.42 0.77 16 12 C 0.06 1.01 6.86 37.16 0.25 1.26 16 13 O -0.56 -9.70 12.64 -35.23 -0.45 -10.14 16 14 N -0.72 -16.70 4.51 -53.43 -0.24 -16.94 16 15 C -0.34 -8.88 9.93 -15.06 -0.15 -9.03 16 16 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 17 C -0.04 -1.04 5.50 -17.43 -0.10 -1.14 16 18 N -0.94 -27.98 13.70 55.49 0.76 -27.22 16 19 Si 1.08 24.91 29.92 -169.99 -5.09 19.83 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.30 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 23 C 0.27 3.98 6.53 -81.82 -0.53 3.44 16 24 C -0.12 -1.58 4.76 -91.77 -0.44 -2.02 16 25 C -0.16 -1.80 10.04 -26.73 -0.27 -2.07 16 26 C -0.15 -1.68 10.23 -26.73 -0.27 -1.95 16 27 N -0.52 -7.41 9.34 -6.68 -0.06 -7.47 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.18 2.36 6.58 -52.49 -0.35 2.02 16 32 H 0.41 6.67 6.31 -40.82 -0.26 6.41 16 33 H 0.08 1.48 7.39 -51.92 -0.38 1.10 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.37 4.52 9.12 45.56 0.42 4.93 16 38 H 0.37 9.31 6.63 -40.82 -0.27 9.04 16 39 H 0.26 7.68 6.77 -40.82 -0.28 7.40 16 40 H 0.15 2.24 6.15 -51.93 -0.32 1.92 16 41 H 0.11 1.17 7.58 -51.93 -0.39 0.78 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -32.65 370.57 -8.56 -41.21 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -5.26 Total: 20.60 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.44 Total: 3.97 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: 0.02 Total: -71.41 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.37 Total: -19.78 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.09 Total: 19.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.65 -8.56 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486056544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.417 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds