Wall clock time and date at job start Tue Mar 31 2020 04:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31883 * 118.95344 * 2 1 4 4 C 1.32132 * 120.96914 * 179.72539 * 3 2 1 5 5 C 1.39975 * 118.91787 * 0.57107 * 4 3 2 6 6 C 1.47841 * 120.93529 * 179.71696 * 5 4 3 7 7 O 1.21550 * 119.99571 * 174.16479 * 6 5 4 8 8 N 1.34773 * 119.99896 * 354.16375 * 6 5 4 9 9 C 1.46504 * 119.99651 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47336 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.47001 * 65.00010 * 10 9 8 12 12 C 1.52995 * 109.47607 * 185.00058 * 10 9 8 13 13 O 1.42908 * 109.46863 * 55.00111 * 12 10 9 14 14 N 1.46505 * 109.47247 * 305.00702 * 10 9 8 15 15 C 1.36934 * 120.00277 * 154.99655 * 14 10 9 16 16 H 1.07999 * 119.99978 * 0.02562 * 15 14 10 17 17 C 1.38805 * 120.00202 * 179.97438 * 15 14 10 18 18 N 1.31624 * 120.00200 * 359.72548 * 17 15 14 19 19 Si 1.86805 * 120.00268 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46895 * 269.72524 * 19 17 15 21 21 H 1.48500 * 109.46697 * 29.72823 * 19 17 15 22 22 H 1.48498 * 109.47047 * 149.72428 * 19 17 15 23 23 C 1.39920 * 118.12330 * 359.45107 * 5 4 3 24 24 C 1.50701 * 120.53754 * 180.29582 * 23 5 4 25 25 C 1.53006 * 117.49534 * 179.73366 * 24 23 5 26 26 C 1.53004 * 117.50203 * 111.11226 * 24 23 5 27 27 N 1.31855 * 118.95156 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47229 * 269.97398 * 1 2 3 29 29 H 1.08998 * 109.47230 * 29.97215 * 1 2 3 30 30 H 1.08998 * 109.47527 * 149.97222 * 1 2 3 31 31 H 1.07996 * 120.54755 * 180.31511 * 4 3 2 32 32 H 0.97002 * 120.00237 * 359.97438 * 8 6 5 33 33 H 1.09008 * 109.47049 * 60.00171 * 9 8 6 34 34 H 1.08997 * 109.47160 * 300.00216 * 9 8 6 35 35 H 1.08999 * 109.47620 * 175.00132 * 12 10 9 36 36 H 1.09000 * 109.47454 * 295.00891 * 12 10 9 37 37 H 0.96696 * 113.99979 * 179.97438 * 13 12 10 38 38 H 0.97004 * 119.99657 * 334.99246 * 14 10 9 39 39 H 0.97005 * 119.99165 * 0.27368 * 18 17 15 40 40 H 1.08993 * 115.54986 * 325.43992 * 24 23 5 41 41 H 1.08992 * 117.50329 * 359.97438 * 25 24 23 42 42 H 1.09003 * 117.49346 * 145.02214 * 25 24 23 43 43 H 1.08992 * 117.50203 * 214.97612 * 26 24 23 44 44 H 1.09005 * 117.49430 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 0.0054 5 6 4.1855 -0.0001 -0.0010 6 6 5.6639 -0.0001 -0.0016 7 8 6.2716 -1.0479 0.0999 8 7 6.3377 1.1616 -0.1146 9 6 7.8027 1.1616 -0.1146 10 6 8.3127 2.5972 -0.2549 11 1 8.0244 3.1728 0.6247 12 6 9.8375 2.5868 -0.3802 13 8 10.2206 1.7376 -1.4639 14 7 7.7285 3.2083 -1.4514 15 6 7.5999 4.5692 -1.5319 16 1 7.9296 5.1921 -0.7136 17 6 7.0468 5.1482 -2.6658 18 7 6.6509 4.3895 -3.6658 19 14 6.8721 7.0048 -2.7760 20 1 5.5504 7.4105 -2.2341 21 1 7.9507 7.6511 -1.9859 22 1 6.9764 7.4284 -4.1954 23 6 3.4661 -1.2002 -0.0011 24 6 4.1856 -2.5244 -0.0011 25 6 3.3304 -3.7931 0.0051 26 6 4.0934 -3.3786 1.2648 27 7 2.1452 -1.1538 -0.0005 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 3.9817 2.1493 0.0105 32 1 5.8526 1.9977 -0.1959 33 1 8.1660 0.5640 -0.9507 34 1 8.1660 0.7363 0.8209 35 1 10.1935 3.5996 -0.5690 36 1 10.2757 2.2142 0.5457 37 1 11.1761 1.6834 -1.6023 38 1 7.4328 2.6488 -2.1866 39 1 6.7420 3.4254 -3.6087 40 1 5.1217 -2.5507 -0.5589 41 1 2.2475 -3.6701 0.0096 42 1 3.7039 -4.6544 -0.5489 43 1 4.9686 -3.9672 1.5397 44 1 3.5126 -2.9827 2.0979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486056544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:38 Heat of formation + Delta-G solvation = -21.263103 kcal Electronic energy + Delta-G solvation = -27027.560203 eV Core-core repulsion = 23173.440713 eV Total energy + Delta-G solvation = -3854.119490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.57713 -40.57627 -38.80113 -38.25150 -36.55983 -35.54449 -34.73391 -34.15948 -33.07265 -30.36765 -29.53960 -27.09068 -26.22906 -25.51918 -24.66033 -23.26651 -22.20636 -21.86796 -21.72718 -19.60099 -18.99008 -18.91080 -18.20453 -17.53496 -17.08202 -16.84581 -16.45234 -16.26052 -16.09632 -15.71447 -15.45754 -15.23042 -14.98835 -14.90639 -14.54681 -14.34758 -13.67493 -13.44700 -13.36610 -13.11107 -12.99219 -12.83897 -12.70584 -12.54954 -12.52425 -12.37875 -12.07050 -11.88300 -11.62237 -11.28511 -11.26666 -11.00782 -10.79399 -10.75384 -10.54251 -10.47212 -10.09212 -9.11609 -8.32967 -5.28772 -0.75855 -0.21888 1.61213 1.64152 1.70723 1.83753 1.98516 2.46239 2.65864 2.72856 2.81642 2.92673 3.18411 3.42890 3.50333 3.52559 3.68259 3.73276 3.87057 3.95023 3.99145 4.05863 4.15700 4.33286 4.46688 4.50754 4.53665 4.66384 4.71653 4.74633 4.80105 4.82343 4.90158 4.96053 5.10701 5.13315 5.24666 5.28728 5.35785 5.64539 5.71596 6.35077 6.52553 6.82785 6.96607 7.00863 7.10501 7.99897 8.14121 9.17419 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.003872 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.366482 B = 7230.387260 C = 9092.542344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.330 3.670 3 N -0.539 5.539 4 C 0.193 3.807 5 C -0.261 4.261 6 C 0.568 3.432 7 O -0.552 6.552 8 N -0.706 5.706 9 C 0.131 3.869 10 C 0.165 3.835 11 H 0.079 0.921 12 C 0.065 3.935 13 O -0.585 6.585 14 N -0.734 5.734 15 C -0.325 4.325 16 H 0.073 0.927 17 C -0.099 4.099 18 N -0.975 5.975 19 Si 1.125 2.875 20 H -0.284 1.284 21 H -0.273 1.273 22 H -0.302 1.302 23 C 0.261 3.739 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.138 4.138 27 N -0.526 5.526 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.181 0.819 32 H 0.406 0.594 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.386 0.614 38 H 0.358 0.642 39 H 0.242 0.758 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.084 -11.538 12.233 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 N -0.254 5.254 4 C 0.026 3.974 5 C -0.269 4.269 6 C 0.354 3.646 7 O -0.432 6.432 8 N -0.357 5.357 9 C 0.007 3.993 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.015 4.015 13 O -0.391 6.391 14 N -0.376 5.376 15 C -0.456 4.456 16 H 0.091 0.909 17 C -0.291 4.291 18 N -0.623 5.623 19 Si 0.952 3.048 20 H -0.211 1.211 21 H -0.198 1.198 22 H -0.229 1.229 23 C 0.115 3.885 24 C -0.161 4.161 25 C -0.182 4.182 26 C -0.176 4.176 27 N -0.241 5.241 28 H 0.127 0.873 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.198 0.802 32 H 0.243 0.757 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.190 0.810 39 H 0.052 0.948 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.732 -10.910 11.506 17.641 hybrid contribution 2.186 -0.554 0.309 2.276 sum -5.546 -11.464 11.815 17.372 Atomic orbital electron populations 1.20803 0.82291 1.05545 1.05565 1.24376 1.00213 0.82775 0.86122 1.68394 1.09537 1.30723 1.16731 1.23726 0.89962 0.98006 0.85675 1.21497 0.95637 0.96667 1.13096 1.17839 0.86265 0.83906 0.76605 1.90683 1.69906 1.31286 1.51352 1.45880 1.08084 1.08963 1.72753 1.21458 0.78440 0.97382 1.02036 1.20805 0.91294 0.91580 0.90707 0.90341 1.22843 0.96746 0.92911 0.89046 1.86499 1.29200 1.69151 1.54284 1.42499 1.74098 1.03668 1.17334 1.20361 1.37157 0.84457 1.03634 0.90901 1.26982 0.99402 1.09963 0.92760 1.70969 1.52463 1.04855 1.34032 0.82635 0.76763 0.70255 0.75189 1.21134 1.19814 1.22907 1.21214 0.88900 0.94106 0.84317 1.21222 1.01173 0.86789 1.06924 1.23094 0.99265 0.95686 1.00170 1.22925 1.03132 1.00727 0.90779 1.68190 1.08463 1.30327 1.17132 0.87309 0.88496 0.87997 0.80174 0.75673 0.92591 0.89650 0.94746 0.91349 0.76533 0.81007 0.94758 0.85340 0.87462 0.86622 0.86842 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.31 71.23 0.73 -0.63 16 2 C 0.33 8.57 7.64 138.70 1.06 9.63 16 3 N -0.54 -15.78 10.31 -186.79 -1.93 -17.70 16 4 C 0.19 5.79 10.80 85.07 0.92 6.71 16 5 C -0.26 -8.22 5.91 -19.91 -0.12 -8.34 16 6 C 0.57 19.21 7.75 86.79 0.67 19.88 16 7 O -0.55 -20.32 13.56 -3.87 -0.05 -20.37 16 8 N -0.71 -23.33 5.34 -465.98 -2.49 -25.82 16 9 C 0.13 4.36 5.12 86.38 0.44 4.80 16 10 C 0.17 5.89 2.84 44.99 0.13 6.02 16 11 H 0.08 2.64 8.08 -2.38 -0.02 2.62 16 12 C 0.07 2.08 6.86 71.98 0.49 2.57 16 13 O -0.58 -19.52 12.64 -148.98 -1.88 -21.41 16 14 N -0.73 -33.93 4.51 -322.95 -1.46 -35.38 16 15 C -0.32 -16.74 9.93 84.03 0.83 -15.91 16 16 H 0.07 3.60 7.83 -2.91 -0.02 3.57 16 17 C -0.10 -5.49 5.50 84.86 0.47 -5.02 16 18 N -0.98 -59.64 13.70 21.65 0.30 -59.35 16 19 Si 1.13 50.12 29.92 68.60 2.05 52.17 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 C 0.26 7.80 6.53 42.92 0.28 8.08 16 24 C -0.14 -3.84 4.76 -11.54 -0.05 -3.89 16 25 C -0.15 -2.95 10.04 30.60 0.31 -2.64 16 26 C -0.14 -2.95 10.23 30.60 0.31 -2.64 16 27 N -0.53 -14.44 9.34 -175.04 -1.63 -16.08 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.18 4.99 6.58 -2.91 -0.02 4.97 16 32 H 0.41 13.52 6.31 -92.71 -0.58 12.94 16 33 H 0.06 2.14 7.39 -2.38 -0.02 2.12 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.39 8.97 9.12 -74.06 -0.68 8.30 16 38 H 0.36 18.45 6.63 -92.71 -0.61 17.83 16 39 H 0.24 15.00 6.77 -92.70 -0.63 14.38 16 40 H 0.13 3.99 6.15 -2.39 -0.01 3.97 16 41 H 0.11 2.18 7.58 -2.39 -0.02 2.16 16 42 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -70.79 370.57 -1.28 -72.07 By element: Atomic # 1 Polarization: 53.91 SS G_CDS: -0.67 Total: 53.24 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 6.48 Total: 18.62 kcal Atomic # 7 Polarization: -147.12 SS G_CDS: -7.21 Total: -154.33 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -1.93 Total: -41.78 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal Total: -70.79 -1.28 -72.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486056544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.811 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds