Wall clock time and date at job start Tue Mar 31 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31886 * 118.95189 * 2 1 4 4 C 1.32132 * 120.96416 * 179.72958 * 3 2 1 5 5 C 1.39965 * 118.92426 * 0.56451 * 4 3 2 6 6 C 1.47834 * 120.94145 * 179.72209 * 5 4 3 7 7 O 1.21548 * 120.00046 * 174.16218 * 6 5 4 8 8 N 1.34781 * 119.99737 * 354.15953 * 6 5 4 9 9 C 1.46504 * 119.99749 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46723 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.47019 * 305.00007 * 10 9 8 12 12 O 1.42894 * 109.47158 * 65.00129 * 10 9 8 13 13 C 1.52995 * 109.46615 * 185.00293 * 10 9 8 14 14 N 1.46498 * 109.47207 * 180.02562 * 13 10 9 15 15 C 1.36935 * 120.00753 * 179.97438 * 14 13 10 16 16 H 1.08004 * 119.99590 * 359.97438 * 15 14 13 17 17 C 1.38804 * 120.00473 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00218 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47100 * 59.99820 * 19 17 15 21 21 H 1.48502 * 109.46998 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47073 * 300.00369 * 19 17 15 23 23 C 1.39927 * 118.11922 * 359.44844 * 5 4 3 24 24 C 1.50707 * 120.53644 * 180.28911 * 23 5 4 25 25 C 1.53002 * 117.49740 * 179.73465 * 24 23 5 26 26 C 1.53000 * 60.00104 * 252.51834 * 25 24 23 27 27 N 1.31849 * 118.95136 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46676 * 269.98146 * 1 2 3 29 29 H 1.09004 * 109.47143 * 29.97497 * 1 2 3 30 30 H 1.08997 * 109.47080 * 149.97616 * 1 2 3 31 31 H 1.08003 * 120.53614 * 180.31073 * 4 3 2 32 32 H 0.96993 * 119.99800 * 359.72655 * 8 6 5 33 33 H 1.08991 * 109.47160 * 300.00241 * 9 8 6 34 34 H 1.08999 * 109.46841 * 60.00409 * 9 8 6 35 35 H 0.96700 * 114.00096 * 59.99930 * 12 10 9 36 36 H 1.09000 * 109.47583 * 299.99860 * 13 10 9 37 37 H 1.08999 * 109.47556 * 59.99737 * 13 10 9 38 38 H 0.97003 * 119.99732 * 359.97438 * 14 13 10 39 39 H 0.96998 * 120.00610 * 179.97438 * 18 17 15 40 40 H 1.08997 * 115.54978 * 325.45132 * 24 23 5 41 41 H 1.09004 * 117.49508 * 0.02562 * 25 24 23 42 42 H 1.09002 * 117.49422 * 145.02521 * 25 24 23 43 43 H 1.09001 * 117.49333 * 252.51011 * 26 25 24 44 44 H 1.08994 * 117.51624 * 107.48831 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2004 0.0053 5 6 4.1855 -0.0001 -0.0010 6 6 5.6639 -0.0001 -0.0016 7 8 6.2716 -1.0479 0.1000 8 7 6.3377 1.1616 -0.1147 9 6 7.8028 1.1616 -0.1147 10 6 8.3127 2.5974 -0.2539 11 1 7.8781 3.0527 -1.1438 12 8 7.9347 3.3511 0.8998 13 6 9.8375 2.5871 -0.3793 14 7 10.3259 3.9618 -0.5119 15 6 11.6680 4.2026 -0.6385 16 1 12.3665 3.3788 -0.6401 17 6 12.1307 5.5051 -0.7648 18 7 11.2795 6.5090 -0.7623 19 14 13.9616 5.8334 -0.9367 20 1 14.4749 5.1511 -2.1516 21 1 14.1934 7.2955 -1.0543 22 1 14.6720 5.3147 0.2597 23 6 3.4661 -1.2002 -0.0009 24 6 4.1857 -2.5244 -0.0011 25 6 3.3305 -3.7931 0.0053 26 6 4.0935 -3.3784 1.2651 27 7 2.1453 -1.1537 -0.0005 28 1 -0.3632 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 3.9817 2.1494 0.0104 32 1 5.8527 1.9973 -0.1998 33 1 8.1661 0.7365 0.8208 34 1 8.1661 0.5640 -0.9507 35 1 8.2869 3.0025 1.7301 36 1 10.2722 2.1318 0.5106 37 1 10.1259 2.0121 -1.2592 38 1 9.6986 4.7017 -0.5101 39 1 11.6028 7.4193 -0.8501 40 1 5.1217 -2.5506 -0.5589 41 1 2.2475 -3.6699 0.0092 42 1 3.7039 -4.6544 -0.5486 43 1 4.9688 -3.9671 1.5399 44 1 3.5127 -2.9826 2.0981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667929732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:32 Heat of formation + Delta-G solvation = 0.239872 kcal Electronic energy + Delta-G solvation = -26002.930899 eV Core-core repulsion = 22149.743847 eV Total energy + Delta-G solvation = -3853.187051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.77009 -39.65657 -37.83561 -37.41262 -34.66231 -34.10262 -33.80727 -33.35572 -31.35585 -29.83095 -28.70099 -26.01894 -25.27152 -24.00189 -22.71720 -22.49764 -21.58001 -21.27989 -20.80210 -18.20964 -18.16086 -17.18616 -16.79272 -16.21589 -16.16264 -15.83828 -15.45598 -15.38239 -14.70332 -14.51475 -14.41057 -14.15997 -13.82391 -13.54913 -13.14427 -13.02954 -12.86917 -12.69641 -12.41204 -12.25988 -11.99539 -11.92167 -11.80039 -11.63944 -10.99349 -10.86693 -10.83049 -10.68719 -10.50877 -10.23545 -9.97839 -9.82912 -9.71650 -9.66061 -9.54004 -9.22822 -8.93317 -6.97789 -5.79101 -3.09215 0.05739 0.61196 2.55226 2.82906 3.25801 3.39718 3.42125 3.46480 3.47673 3.56057 3.67971 3.95774 4.32734 4.47636 4.50030 4.64189 4.66505 4.73543 4.75791 4.83592 4.86532 5.09292 5.10871 5.16378 5.41596 5.42423 5.45960 5.51519 5.53993 5.61936 5.69354 5.86684 5.87872 5.91437 5.99313 6.13463 6.24840 6.45375 6.53391 6.61296 7.22404 7.63383 7.64824 7.86362 7.94022 8.38958 9.50630 10.06681 10.42422 11.43063 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.002212 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.779337 B =12652.347501 C =13612.601707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.340 3.660 3 N -0.525 5.525 4 C 0.192 3.808 5 C -0.247 4.247 6 C 0.568 3.432 7 O -0.526 6.526 8 N -0.714 5.714 9 C 0.091 3.909 10 C 0.088 3.912 11 H 0.105 0.895 12 O -0.552 6.552 13 C 0.127 3.873 14 N -0.725 5.725 15 C -0.246 4.246 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.269 3.731 24 C -0.121 4.121 25 C -0.163 4.163 26 C -0.147 4.147 27 N -0.522 5.522 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.403 0.597 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.374 0.626 36 H 0.023 0.977 37 H 0.029 0.971 38 H 0.389 0.611 39 H 0.256 0.744 40 H 0.149 0.851 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.781 -17.336 2.570 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 N -0.240 5.240 4 C 0.024 3.976 5 C -0.254 4.254 6 C 0.353 3.647 7 O -0.403 6.403 8 N -0.366 5.366 9 C -0.033 4.033 10 C 0.028 3.972 11 H 0.123 0.877 12 O -0.357 6.357 13 C -0.002 4.002 14 N -0.371 5.371 15 C -0.377 4.377 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.123 3.877 24 C -0.139 4.139 25 C -0.201 4.201 26 C -0.185 4.185 27 N -0.237 5.237 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.192 0.808 32 H 0.239 0.761 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.222 0.778 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.224 0.776 39 H 0.066 0.934 40 H 0.166 0.834 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.473 -17.708 2.173 28.693 hybrid contribution 1.950 0.747 0.235 2.101 sum -20.523 -16.961 2.407 26.733 Atomic orbital electron populations 1.20651 0.85202 1.04571 1.04229 1.23531 0.98485 0.83213 0.87386 1.68312 1.09628 1.30055 1.15975 1.23542 0.89694 0.97710 0.86627 1.21521 0.96119 0.96082 1.11699 1.17699 0.85791 0.84161 0.77005 1.90740 1.69347 1.30742 1.49485 1.45831 1.07911 1.08840 1.73979 1.22182 0.78684 0.99015 1.03440 1.22401 0.96248 0.88687 0.89851 0.87728 1.86575 1.76252 1.56151 1.16721 1.21183 0.90164 0.90027 0.98799 1.42218 1.05465 1.01027 1.88351 1.19163 0.83669 0.92066 1.42759 0.91259 1.24764 0.97761 0.95579 1.02696 1.69662 1.32909 0.98404 1.56804 0.86252 0.84985 0.76896 0.77928 1.21221 1.21633 1.21228 1.20985 0.88374 0.93805 0.84563 1.21312 1.01134 0.86204 1.05277 1.23031 0.99523 0.96699 1.00803 1.22874 1.02807 1.01619 0.91180 1.68109 1.09012 1.30122 1.16447 0.89173 0.89175 0.89307 0.80808 0.76137 0.90653 0.90065 0.77834 0.95902 0.95349 0.77629 0.93383 0.83402 0.87539 0.88303 0.87815 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.31 36.01 0.37 -0.17 16 2 C 0.34 3.38 7.64 -157.07 -1.20 2.18 16 3 N -0.53 -5.54 10.32 -10.39 -0.11 -5.65 16 4 C 0.19 1.88 10.80 -16.78 -0.18 1.70 16 5 C -0.25 -2.74 5.91 -104.69 -0.62 -3.35 16 6 C 0.57 6.84 7.75 -12.33 -0.10 6.74 16 7 O -0.53 -7.53 13.56 5.32 0.07 -7.46 16 8 N -0.71 -7.65 5.46 -61.25 -0.33 -7.99 16 9 C 0.09 1.08 5.31 -4.04 -0.02 1.06 16 10 C 0.09 1.26 3.09 -26.73 -0.08 1.18 16 11 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 12 O -0.55 -8.23 13.03 -35.23 -0.46 -8.69 16 13 C 0.13 2.36 5.92 -4.05 -0.02 2.34 16 14 N -0.73 -17.97 5.49 -59.92 -0.33 -18.30 16 15 C -0.25 -6.81 9.99 -15.06 -0.15 -6.96 16 16 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 19 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.27 3.08 6.53 -81.81 -0.53 2.55 16 24 C -0.12 -1.28 4.76 -91.77 -0.44 -1.72 16 25 C -0.16 -1.39 10.04 -26.73 -0.27 -1.66 16 26 C -0.15 -1.34 10.23 -26.73 -0.27 -1.61 16 27 N -0.52 -5.67 9.34 -6.67 -0.06 -5.74 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.17 1.24 6.58 -52.48 -0.35 0.90 16 32 H 0.40 3.67 6.65 -40.82 -0.27 3.40 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.37 4.66 9.05 45.56 0.41 5.07 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.39 10.33 7.54 -40.82 -0.31 10.03 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.15 1.75 6.15 -51.93 -0.32 1.43 16 41 H 0.11 0.92 7.58 -51.93 -0.39 0.53 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -33.80 374.15 -8.91 -42.71 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.42 Total: 13.77 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.61 Total: 1.83 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.11 Total: -65.03 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.39 Total: -16.15 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.80 -8.91 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667929732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.948 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds