Wall clock time and date at job start Tue Mar 31 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31886 * 118.95189 * 2 1 4 4 C 1.32132 * 120.96416 * 179.72958 * 3 2 1 5 5 C 1.39965 * 118.92426 * 0.56451 * 4 3 2 6 6 C 1.47834 * 120.94145 * 179.72209 * 5 4 3 7 7 O 1.21548 * 120.00046 * 174.16218 * 6 5 4 8 8 N 1.34781 * 119.99737 * 354.15953 * 6 5 4 9 9 C 1.46504 * 119.99749 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46723 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.47019 * 305.00007 * 10 9 8 12 12 O 1.42894 * 109.47158 * 65.00129 * 10 9 8 13 13 C 1.52995 * 109.46615 * 185.00293 * 10 9 8 14 14 N 1.46498 * 109.47207 * 180.02562 * 13 10 9 15 15 C 1.36935 * 120.00753 * 179.97438 * 14 13 10 16 16 H 1.08004 * 119.99590 * 359.97438 * 15 14 13 17 17 C 1.38804 * 120.00473 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00218 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47100 * 59.99820 * 19 17 15 21 21 H 1.48502 * 109.46998 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47073 * 300.00369 * 19 17 15 23 23 C 1.39927 * 118.11922 * 359.44844 * 5 4 3 24 24 C 1.50707 * 120.53644 * 180.28911 * 23 5 4 25 25 C 1.53002 * 117.49740 * 179.73465 * 24 23 5 26 26 C 1.53000 * 60.00104 * 252.51834 * 25 24 23 27 27 N 1.31849 * 118.95136 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46676 * 269.98146 * 1 2 3 29 29 H 1.09004 * 109.47143 * 29.97497 * 1 2 3 30 30 H 1.08997 * 109.47080 * 149.97616 * 1 2 3 31 31 H 1.08003 * 120.53614 * 180.31073 * 4 3 2 32 32 H 0.96993 * 119.99800 * 359.72655 * 8 6 5 33 33 H 1.08991 * 109.47160 * 300.00241 * 9 8 6 34 34 H 1.08999 * 109.46841 * 60.00409 * 9 8 6 35 35 H 0.96700 * 114.00096 * 59.99930 * 12 10 9 36 36 H 1.09000 * 109.47583 * 299.99860 * 13 10 9 37 37 H 1.08999 * 109.47556 * 59.99737 * 13 10 9 38 38 H 0.97003 * 119.99732 * 359.97438 * 14 13 10 39 39 H 0.96998 * 120.00610 * 179.97438 * 18 17 15 40 40 H 1.08997 * 115.54978 * 325.45132 * 24 23 5 41 41 H 1.09004 * 117.49508 * 0.02562 * 25 24 23 42 42 H 1.09002 * 117.49422 * 145.02521 * 25 24 23 43 43 H 1.09001 * 117.49333 * 252.51011 * 26 25 24 44 44 H 1.08994 * 117.51624 * 107.48831 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2004 0.0053 5 6 4.1855 -0.0001 -0.0010 6 6 5.6639 -0.0001 -0.0016 7 8 6.2716 -1.0479 0.1000 8 7 6.3377 1.1616 -0.1147 9 6 7.8028 1.1616 -0.1147 10 6 8.3127 2.5974 -0.2539 11 1 7.8781 3.0527 -1.1438 12 8 7.9347 3.3511 0.8998 13 6 9.8375 2.5871 -0.3793 14 7 10.3259 3.9618 -0.5119 15 6 11.6680 4.2026 -0.6385 16 1 12.3665 3.3788 -0.6401 17 6 12.1307 5.5051 -0.7648 18 7 11.2795 6.5090 -0.7623 19 14 13.9616 5.8334 -0.9367 20 1 14.4749 5.1511 -2.1516 21 1 14.1934 7.2955 -1.0543 22 1 14.6720 5.3147 0.2597 23 6 3.4661 -1.2002 -0.0009 24 6 4.1857 -2.5244 -0.0011 25 6 3.3305 -3.7931 0.0053 26 6 4.0935 -3.3784 1.2651 27 7 2.1453 -1.1537 -0.0005 28 1 -0.3632 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 3.9817 2.1494 0.0104 32 1 5.8527 1.9973 -0.1998 33 1 8.1661 0.7365 0.8208 34 1 8.1661 0.5640 -0.9507 35 1 8.2869 3.0025 1.7301 36 1 10.2722 2.1318 0.5106 37 1 10.1259 2.0121 -1.2592 38 1 9.6986 4.7017 -0.5101 39 1 11.6028 7.4193 -0.8501 40 1 5.1217 -2.5506 -0.5589 41 1 2.2475 -3.6699 0.0092 42 1 3.7039 -4.6544 -0.5486 43 1 4.9688 -3.9671 1.5399 44 1 3.5127 -2.9826 2.0981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667929732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:32 Heat of formation + Delta-G solvation = -25.555456 kcal Electronic energy + Delta-G solvation = -26004.049468 eV Core-core repulsion = 22149.743847 eV Total energy + Delta-G solvation = -3854.305621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.55622 -40.61023 -38.97035 -38.24994 -36.08428 -35.48210 -34.62409 -34.10489 -33.17473 -30.93180 -29.71498 -27.26038 -26.35335 -25.01937 -24.16971 -23.25040 -22.80508 -22.07423 -21.80765 -19.36001 -18.99919 -18.92523 -17.65629 -17.33973 -17.21282 -16.71809 -16.47974 -16.38079 -16.10768 -15.68571 -15.53979 -15.23437 -14.94918 -14.81086 -14.35704 -14.17384 -13.87806 -13.56936 -13.35473 -13.22453 -13.02660 -12.93962 -12.80669 -12.71746 -12.51085 -12.37315 -12.20377 -11.97556 -11.80003 -11.63382 -11.26097 -11.05741 -10.95569 -10.71820 -10.53344 -10.43542 -10.13396 -9.00527 -7.94498 -5.23874 -0.73551 -0.17181 1.47960 1.50768 1.56973 1.66573 1.89490 2.48352 2.56176 2.68614 2.85237 2.93769 3.22148 3.36290 3.43724 3.55058 3.58603 3.71984 3.96183 3.98527 4.04010 4.06708 4.16690 4.21111 4.41200 4.52586 4.62778 4.68181 4.72070 4.73031 4.82232 4.85105 4.94759 4.97593 5.10178 5.20964 5.24958 5.29848 5.31737 5.48469 5.75577 6.26561 6.34294 6.80041 6.86633 7.02358 7.34003 8.09906 8.32551 9.28424 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.002212 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.779337 B =12652.347501 C =13612.601707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.332 3.668 3 N -0.538 5.538 4 C 0.196 3.804 5 C -0.261 4.261 6 C 0.571 3.429 7 O -0.551 6.551 8 N -0.705 5.705 9 C 0.104 3.896 10 C 0.107 3.893 11 H 0.103 0.897 12 O -0.563 6.563 13 C 0.122 3.878 14 N -0.740 5.740 15 C -0.249 4.249 16 H 0.076 0.924 17 C -0.076 4.076 18 N -0.968 5.968 19 Si 0.974 3.026 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.278 1.278 23 C 0.259 3.741 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.144 4.144 27 N -0.531 5.531 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.198 0.802 32 H 0.412 0.588 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.385 0.615 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.377 0.623 39 H 0.251 0.749 40 H 0.134 0.866 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.441 -18.316 2.754 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 N -0.253 5.253 4 C 0.029 3.971 5 C -0.268 4.268 6 C 0.357 3.643 7 O -0.431 6.431 8 N -0.357 5.357 9 C -0.020 4.020 10 C 0.047 3.953 11 H 0.120 0.880 12 O -0.369 6.369 13 C -0.006 4.006 14 N -0.383 5.383 15 C -0.380 4.380 16 H 0.094 0.906 17 C -0.268 4.268 18 N -0.618 5.618 19 Si 0.803 3.197 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.204 1.204 23 C 0.112 3.888 24 C -0.158 4.158 25 C -0.185 4.185 26 C -0.182 4.182 27 N -0.246 5.246 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.214 0.786 32 H 0.249 0.751 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.234 0.766 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.210 0.790 39 H 0.060 0.940 40 H 0.151 0.849 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.146 -18.730 2.365 29.869 hybrid contribution 2.084 0.977 0.194 2.310 sum -21.063 -17.753 2.560 27.665 Atomic orbital electron populations 1.20798 0.82698 1.05552 1.05369 1.24282 1.00052 0.82875 0.86096 1.68417 1.09846 1.30349 1.16691 1.23914 0.89688 0.98186 0.85333 1.21457 0.95485 0.96645 1.13251 1.17804 0.86175 0.83871 0.76428 1.90731 1.69913 1.31648 1.50800 1.45680 1.07371 1.09066 1.73552 1.21925 0.79332 0.97035 1.03707 1.22111 0.93355 0.90046 0.89813 0.87960 1.86557 1.76236 1.56769 1.17377 1.21403 0.93119 0.86978 0.99080 1.42405 1.04454 1.03102 1.88361 1.19600 0.85234 0.92276 1.40919 0.90571 1.25591 1.02003 0.95604 1.03611 1.69821 1.34709 0.98441 1.58834 0.85209 0.80062 0.76231 0.78225 1.20349 1.22236 1.20359 1.21198 0.88880 0.94247 0.84436 1.21263 1.01196 0.86906 1.06386 1.23079 0.99249 0.95993 1.00135 1.22916 1.03173 1.01172 0.90947 1.68185 1.08697 1.30570 1.17121 0.87748 0.88213 0.88266 0.78560 0.75074 0.90276 0.89994 0.76572 0.95055 0.94790 0.79045 0.94000 0.84878 0.87571 0.86756 0.87103 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.31 71.24 0.73 -0.16 16 2 C 0.33 6.20 7.64 138.71 1.06 7.26 16 3 N -0.54 -10.67 10.32 -186.79 -1.93 -12.60 16 4 C 0.20 3.61 10.80 85.07 0.92 4.53 16 5 C -0.26 -5.62 5.91 -19.91 -0.12 -5.74 16 6 C 0.57 13.34 7.75 86.78 0.67 14.02 16 7 O -0.55 -15.65 13.56 -3.87 -0.05 -15.70 16 8 N -0.70 -14.18 5.46 -465.98 -2.54 -16.72 16 9 C 0.10 2.33 5.31 86.38 0.46 2.79 16 10 C 0.11 2.92 3.09 30.59 0.09 3.01 16 11 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 12 O -0.56 -16.08 13.03 -148.98 -1.94 -18.02 16 13 C 0.12 4.39 5.92 86.38 0.51 4.90 16 14 N -0.74 -36.45 5.49 -343.47 -1.89 -38.34 16 15 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 16 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 17 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 18 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 19 Si 0.97 45.73 29.55 68.60 2.03 47.75 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 C 0.26 5.81 6.53 42.92 0.28 6.09 16 24 C -0.14 -2.92 4.76 -11.54 -0.05 -2.97 16 25 C -0.15 -2.36 10.04 30.59 0.31 -2.06 16 26 C -0.14 -2.54 10.23 30.60 0.31 -2.22 16 27 N -0.53 -11.08 9.34 -175.02 -1.63 -12.71 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.20 2.47 6.58 -2.91 -0.02 2.45 16 32 H 0.41 6.84 6.65 -92.71 -0.62 6.22 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.39 9.05 9.05 -74.06 -0.67 8.38 16 36 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.38 20.17 7.54 -92.71 -0.70 19.47 16 39 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.13 3.21 6.15 -2.39 -0.01 3.19 16 41 H 0.11 1.72 7.58 -2.38 -0.02 1.70 16 42 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.84 374.15 -2.11 -73.95 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.92 Total: 38.48 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.49 Total: 12.76 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -7.71 Total: -139.22 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.99 Total: -33.72 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -71.84 -2.11 -73.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667929732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.395 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds