Wall clock time and date at job start Tue Mar 31 2020 04:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31915 * 119.04099 * 2 1 4 4 C 1.32177 * 121.03181 * 179.72023 * 3 2 1 5 5 C 1.38797 * 119.14872 * 0.02562 * 4 3 2 6 6 C 1.39504 * 118.26588 * 359.97438 * 5 4 3 7 7 C 1.48447 * 120.54984 * 179.97438 * 6 5 4 8 8 O 1.21477 * 120.00460 * 340.25319 * 7 6 5 9 9 N 1.34781 * 119.99804 * 160.25711 * 7 6 5 10 10 C 1.46926 * 120.63153 * 0.21811 * 9 7 6 11 11 C 1.52757 * 109.00678 * 233.58472 * 10 9 7 12 12 C 1.53044 * 109.38281 * 305.58322 * 11 10 9 13 13 O 1.42890 * 109.45035 * 301.23049 * 12 11 10 14 14 C 1.53004 * 109.45761 * 181.26090 * 12 11 10 15 15 N 1.46502 * 109.47089 * 59.93387 * 14 12 11 16 16 C 1.36933 * 119.99727 * 179.97438 * 15 14 12 17 17 H 1.07993 * 120.00269 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99771 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00060 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00078 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47351 * 90.00376 * 20 18 16 22 22 H 1.48504 * 109.47472 * 209.99903 * 20 18 16 23 23 H 1.48497 * 109.47521 * 330.00490 * 20 18 16 24 24 C 1.53040 * 109.53241 * 61.24612 * 12 11 10 25 25 C 1.46927 * 120.63010 * 180.49518 * 9 7 6 26 26 N 1.31556 * 119.04014 * 179.73844 * 2 1 3 27 27 H 1.08996 * 109.47218 * 89.99775 * 1 2 3 28 28 H 1.09002 * 109.46973 * 209.99876 * 1 2 3 29 29 H 1.08999 * 109.46863 * 329.99064 * 1 2 3 30 30 H 1.08007 * 120.42366 * 179.97438 * 4 3 2 31 31 H 1.07999 * 120.87227 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.58452 * 353.41693 * 10 9 7 33 33 H 1.09000 * 109.58725 * 113.83909 * 10 9 7 34 34 H 1.08999 * 109.56413 * 185.55017 * 11 10 9 35 35 H 1.08995 * 109.36227 * 65.49977 * 11 10 9 36 36 H 0.96699 * 114.00003 * 300.05922 * 13 12 11 37 37 H 1.08998 * 109.46660 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.47307 * 299.93469 * 14 12 11 39 39 H 0.97001 * 119.99730 * 0.02562 * 15 14 12 40 40 H 0.96999 * 120.00218 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.49176 * 178.68533 * 24 12 11 42 42 H 1.08999 * 109.50394 * 58.58567 * 24 12 11 43 43 H 1.09003 * 109.58545 * 246.15605 * 25 9 7 44 44 H 1.08998 * 109.58474 * 6.58093 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1992 0.0055 5 6 4.1861 0.0112 0.0109 6 6 3.4761 -1.1896 0.0107 7 6 4.1925 -2.4897 0.0157 8 8 5.3540 -2.5446 -0.3356 9 7 3.5541 -3.6094 0.4099 10 6 2.1479 -3.5598 0.8329 11 6 2.0220 -4.1940 2.2170 12 6 2.6204 -5.6023 2.1867 13 8 1.9352 -6.3895 1.2107 14 6 2.4670 -6.2509 3.5639 15 7 1.0458 -6.3299 3.9109 16 6 0.6623 -6.8779 5.1058 17 1 1.4074 -7.2515 5.7924 18 6 -0.6843 -6.9532 5.4344 19 7 -1.5924 -6.4983 4.5973 20 14 -1.2075 -7.7001 7.0646 21 1 -1.2698 -6.6365 8.0992 22 1 -2.5466 -8.3248 6.9159 23 1 -0.2224 -8.7327 7.4750 24 6 4.1050 -5.5198 1.8245 25 6 4.2529 -4.9017 0.4306 26 7 2.1456 -1.1502 0.0053 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 3.9826 2.1490 0.0051 31 1 5.2660 0.0163 0.0150 32 1 1.8157 -2.5226 0.8762 33 1 1.5331 -4.1132 0.1231 34 1 0.9704 -4.2515 2.4979 35 1 2.5604 -3.5855 2.9435 36 1 0.9874 -6.4846 1.3770 37 1 2.8926 -7.2541 3.5424 38 1 2.9900 -5.6508 4.3085 39 1 0.3766 -5.9946 3.2940 40 1 -2.5334 -6.5505 4.8270 41 1 4.5359 -6.5210 1.8260 42 1 4.6238 -4.8988 2.5548 43 1 3.8131 -5.5668 -0.3126 44 1 5.3091 -4.7495 0.2085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755156675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:47 Heat of formation + Delta-G solvation = -4.239897 kcal Electronic energy + Delta-G solvation = -27568.140861 eV Core-core repulsion = 23714.759552 eV Total energy + Delta-G solvation = -3853.381309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70184 -40.04821 -38.48081 -35.67784 -34.33701 -33.97304 -33.54642 -31.89962 -31.08243 -30.34494 -28.80744 -27.14337 -25.63889 -24.02881 -23.43586 -23.00844 -21.83914 -20.51282 -19.46053 -18.29519 -17.51543 -17.40676 -16.42053 -15.91889 -15.86611 -15.64132 -15.09894 -15.02742 -14.80762 -14.32208 -14.17526 -14.00154 -13.65996 -13.42344 -13.21664 -12.87422 -12.86814 -12.63077 -12.58427 -12.29824 -11.84257 -11.71284 -11.30062 -11.12565 -11.06605 -11.00428 -10.87423 -10.78197 -10.52620 -10.30058 -10.15030 -9.84588 -9.71480 -9.57979 -9.00623 -8.93271 -8.59517 -7.02262 -5.85091 -3.13997 0.21838 0.54623 2.50796 2.71983 3.38386 3.39308 3.45134 3.46388 3.53714 3.69173 4.11647 4.47932 4.51518 4.57900 4.64720 4.92480 4.97853 5.05878 5.09585 5.23458 5.27868 5.30493 5.43090 5.49385 5.50608 5.60496 5.67352 5.69339 5.87794 5.92352 5.97230 6.06013 6.09246 6.25821 6.38446 6.42438 6.49828 6.59213 6.67943 6.71294 7.28225 7.61166 7.63725 7.91399 8.09523 8.34081 9.44677 9.98444 10.32838 11.37673 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.003415 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.111861 B = 8197.559678 C = 9461.422583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.315 3.685 3 N -0.507 5.507 4 C 0.155 3.845 5 C -0.181 4.181 6 C 0.142 3.858 7 C 0.566 3.434 8 O -0.536 6.536 9 N -0.577 5.577 10 C 0.077 3.923 11 C -0.157 4.157 12 C 0.128 3.872 13 O -0.560 6.560 14 C 0.129 3.871 15 N -0.729 5.729 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.116 4.116 25 C 0.115 3.885 26 N -0.483 5.483 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.177 0.823 31 H 0.159 0.841 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.383 0.617 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.380 0.620 40 H 0.256 0.744 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.855 13.964 -11.299 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.222 5.222 4 C -0.012 4.012 5 C -0.204 4.204 6 C -0.005 4.005 7 C 0.351 3.649 8 O -0.413 6.413 9 N -0.307 5.307 10 C -0.045 4.045 11 C -0.196 4.196 12 C 0.087 3.913 13 O -0.368 6.368 14 C 0.001 3.999 15 N -0.374 5.374 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C -0.155 4.155 25 C -0.007 4.007 26 N -0.201 5.201 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.194 0.806 31 H 0.177 0.823 32 H 0.155 0.845 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.215 0.785 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.082 13.750 -11.588 20.146 hybrid contribution -0.227 -0.358 1.175 1.249 sum 8.855 13.393 -10.413 19.137 Atomic orbital electron populations 1.20675 0.84891 1.04937 1.04303 1.23521 0.98609 0.83115 0.89909 1.68238 1.10396 1.30384 1.13164 1.23372 0.89464 0.98628 0.89728 1.22914 1.03758 0.92888 1.00803 1.21695 0.89895 0.94881 0.94064 1.17813 0.85587 0.82747 0.78758 1.90774 1.15877 1.85484 1.49163 1.48052 1.13537 1.06999 1.62128 1.22854 0.79896 1.06231 0.95540 1.22500 1.03536 0.96708 0.96829 1.21303 0.91574 0.89552 0.88855 1.86357 1.26200 1.73541 1.50663 1.21314 0.88356 0.97625 0.92641 1.42276 1.00324 1.73883 1.20967 1.19203 0.91316 1.31989 0.94671 0.91178 1.24721 0.95726 1.01743 0.98553 1.69630 1.00299 1.52125 1.36155 0.86176 0.77783 0.78738 0.83400 1.21714 1.21701 1.20760 1.21846 0.94946 1.01951 0.96726 1.21658 0.98109 0.82957 0.97944 1.68301 1.08508 1.29415 1.13874 0.89221 0.88879 0.89264 0.80564 0.82288 0.84519 0.90720 0.89051 0.91452 0.76795 0.95400 0.95789 0.78511 0.93423 0.89778 0.90513 0.90095 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.31 36.01 0.37 -0.34 16 2 C 0.31 3.38 7.64 -157.29 -1.20 2.18 16 3 N -0.51 -5.24 10.32 -10.73 -0.11 -5.35 16 4 C 0.16 1.30 11.31 -17.20 -0.19 1.11 16 5 C -0.18 -1.77 9.72 -38.90 -0.38 -2.15 16 6 C 0.14 1.76 6.52 -82.64 -0.54 1.22 16 7 C 0.57 8.05 7.65 -12.05 -0.09 7.95 16 8 O -0.54 -8.58 16.00 5.39 0.09 -8.49 16 9 N -0.58 -8.01 2.98 -173.92 -0.52 -8.53 16 10 C 0.08 1.05 5.77 -3.93 -0.02 1.02 16 11 C -0.16 -2.41 4.91 -26.83 -0.13 -2.54 16 12 C 0.13 2.06 0.71 -90.57 -0.06 1.99 16 13 O -0.56 -9.31 11.70 -35.23 -0.41 -9.73 16 14 C 0.13 2.53 5.40 -4.04 -0.02 2.51 16 15 N -0.73 -17.39 5.07 -59.91 -0.30 -17.70 16 16 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 C -0.12 -1.61 5.11 -26.61 -0.14 -1.75 16 25 C 0.12 1.55 6.19 -3.71 -0.02 1.53 16 26 N -0.48 -5.80 6.36 -7.32 -0.05 -5.85 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.18 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.16 1.32 7.86 -52.49 -0.41 0.91 16 32 H 0.14 1.82 3.91 -80.47 -0.32 1.50 16 33 H 0.07 1.04 7.81 -51.93 -0.41 0.64 16 34 H 0.09 1.55 6.82 -51.93 -0.35 1.20 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.38 6.39 7.85 45.56 0.36 6.75 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.38 9.21 5.58 -40.82 -0.23 8.98 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.11 7.81 -51.93 -0.41 0.70 16 44 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -32.13 357.09 -8.38 -40.51 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.48 Total: 13.46 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -2.68 Total: 5.62 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -0.25 Total: -63.68 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.33 Total: -18.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.13 -8.38 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755156675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.268 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds