Wall clock time and date at job start Tue Mar 31 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31915 * 119.04099 * 2 1 4 4 C 1.32177 * 121.03181 * 179.72023 * 3 2 1 5 5 C 1.38797 * 119.14872 * 0.02562 * 4 3 2 6 6 C 1.39504 * 118.26588 * 359.97438 * 5 4 3 7 7 C 1.48447 * 120.54984 * 179.97438 * 6 5 4 8 8 O 1.21477 * 120.00460 * 340.25319 * 7 6 5 9 9 N 1.34781 * 119.99804 * 160.25711 * 7 6 5 10 10 C 1.46926 * 120.63153 * 0.21811 * 9 7 6 11 11 C 1.52757 * 109.00678 * 233.58472 * 10 9 7 12 12 C 1.53044 * 109.38281 * 305.58322 * 11 10 9 13 13 O 1.42890 * 109.45035 * 301.23049 * 12 11 10 14 14 C 1.53004 * 109.45761 * 181.26090 * 12 11 10 15 15 N 1.46502 * 109.47089 * 59.93387 * 14 12 11 16 16 C 1.36933 * 119.99727 * 179.97438 * 15 14 12 17 17 H 1.07993 * 120.00269 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99771 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00060 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00078 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47351 * 90.00376 * 20 18 16 22 22 H 1.48504 * 109.47472 * 209.99903 * 20 18 16 23 23 H 1.48497 * 109.47521 * 330.00490 * 20 18 16 24 24 C 1.53040 * 109.53241 * 61.24612 * 12 11 10 25 25 C 1.46927 * 120.63010 * 180.49518 * 9 7 6 26 26 N 1.31556 * 119.04014 * 179.73844 * 2 1 3 27 27 H 1.08996 * 109.47218 * 89.99775 * 1 2 3 28 28 H 1.09002 * 109.46973 * 209.99876 * 1 2 3 29 29 H 1.08999 * 109.46863 * 329.99064 * 1 2 3 30 30 H 1.08007 * 120.42366 * 179.97438 * 4 3 2 31 31 H 1.07999 * 120.87227 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.58452 * 353.41693 * 10 9 7 33 33 H 1.09000 * 109.58725 * 113.83909 * 10 9 7 34 34 H 1.08999 * 109.56413 * 185.55017 * 11 10 9 35 35 H 1.08995 * 109.36227 * 65.49977 * 11 10 9 36 36 H 0.96699 * 114.00003 * 300.05922 * 13 12 11 37 37 H 1.08998 * 109.46660 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.47307 * 299.93469 * 14 12 11 39 39 H 0.97001 * 119.99730 * 0.02562 * 15 14 12 40 40 H 0.96999 * 120.00218 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.49176 * 178.68533 * 24 12 11 42 42 H 1.08999 * 109.50394 * 58.58567 * 24 12 11 43 43 H 1.09003 * 109.58545 * 246.15605 * 25 9 7 44 44 H 1.08998 * 109.58474 * 6.58093 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1992 0.0055 5 6 4.1861 0.0112 0.0109 6 6 3.4761 -1.1896 0.0107 7 6 4.1925 -2.4897 0.0157 8 8 5.3540 -2.5446 -0.3356 9 7 3.5541 -3.6094 0.4099 10 6 2.1479 -3.5598 0.8329 11 6 2.0220 -4.1940 2.2170 12 6 2.6204 -5.6023 2.1867 13 8 1.9352 -6.3895 1.2107 14 6 2.4670 -6.2509 3.5639 15 7 1.0458 -6.3299 3.9109 16 6 0.6623 -6.8779 5.1058 17 1 1.4074 -7.2515 5.7924 18 6 -0.6843 -6.9532 5.4344 19 7 -1.5924 -6.4983 4.5973 20 14 -1.2075 -7.7001 7.0646 21 1 -1.2698 -6.6365 8.0992 22 1 -2.5466 -8.3248 6.9159 23 1 -0.2224 -8.7327 7.4750 24 6 4.1050 -5.5198 1.8245 25 6 4.2529 -4.9017 0.4306 26 7 2.1456 -1.1502 0.0053 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 3.9826 2.1490 0.0051 31 1 5.2660 0.0163 0.0150 32 1 1.8157 -2.5226 0.8762 33 1 1.5331 -4.1132 0.1231 34 1 0.9704 -4.2515 2.4979 35 1 2.5604 -3.5855 2.9435 36 1 0.9874 -6.4846 1.3770 37 1 2.8926 -7.2541 3.5424 38 1 2.9900 -5.6508 4.3085 39 1 0.3766 -5.9946 3.2940 40 1 -2.5334 -6.5505 4.8270 41 1 4.5359 -6.5210 1.8260 42 1 4.6238 -4.8988 2.5548 43 1 3.8131 -5.5668 -0.3126 44 1 5.3091 -4.7495 0.2085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755156675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:46 Heat of formation + Delta-G solvation = -26.723571 kcal Electronic energy + Delta-G solvation = -27569.115826 eV Core-core repulsion = 23714.759552 eV Total energy + Delta-G solvation = -3854.356274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.55508 -41.15218 -39.73729 -36.97398 -35.82181 -35.12999 -34.29071 -33.45978 -32.39496 -31.87967 -29.49987 -28.56219 -26.83561 -25.39659 -24.67426 -24.06458 -23.18422 -21.73207 -20.59481 -19.48197 -19.20439 -18.30580 -17.47802 -17.20439 -16.90813 -16.73284 -16.55173 -16.04170 -15.89411 -15.79820 -15.55399 -15.00653 -14.95464 -14.79229 -14.43657 -14.34468 -14.14152 -13.50896 -13.48596 -13.23930 -13.18419 -13.02520 -12.85638 -12.77142 -12.39204 -12.26001 -12.11541 -12.01993 -11.99545 -11.74274 -11.59853 -11.32962 -10.97933 -10.88253 -10.59405 -9.96299 -9.76232 -9.02821 -7.96889 -5.25417 -0.63893 -0.17910 1.48173 1.48457 1.49979 1.57016 1.69996 2.54501 2.56524 2.68466 2.98129 3.23893 3.28326 3.40227 3.63774 3.68021 3.76251 3.89690 3.98737 4.03769 4.20892 4.32558 4.32839 4.40994 4.48616 4.57310 4.72329 4.72866 4.78008 4.80999 4.84462 4.92412 4.97956 5.05194 5.11831 5.12519 5.28871 5.37097 5.48611 5.53426 5.71632 6.18561 6.24684 6.71860 6.74938 6.91416 7.32830 8.03145 8.28880 9.25715 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.003415 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.111861 B = 8197.559678 C = 9461.422583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.304 3.696 3 N -0.516 5.516 4 C 0.166 3.834 5 C -0.176 4.176 6 C 0.116 3.884 7 C 0.565 3.435 8 O -0.558 6.558 9 N -0.580 5.580 10 C 0.087 3.913 11 C -0.148 4.148 12 C 0.136 3.864 13 O -0.561 6.561 14 C 0.129 3.871 15 N -0.735 5.735 16 C -0.250 4.250 17 H 0.070 0.930 18 C -0.066 4.066 19 N -0.962 5.962 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.274 1.274 24 C -0.111 4.111 25 C 0.119 3.881 26 N -0.500 5.500 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.220 0.780 31 H 0.173 0.827 32 H 0.147 0.853 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.381 0.619 37 H 0.022 0.978 38 H 0.025 0.975 39 H 0.377 0.623 40 H 0.253 0.747 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.635 15.215 -11.354 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 N -0.231 5.231 4 C -0.001 4.001 5 C -0.199 4.199 6 C -0.030 4.030 7 C 0.351 3.649 8 O -0.437 6.437 9 N -0.310 5.310 10 C -0.035 4.035 11 C -0.186 4.186 12 C 0.095 3.905 13 O -0.368 6.368 14 C 0.002 3.998 15 N -0.380 5.380 16 C -0.381 4.381 17 H 0.088 0.912 18 C -0.259 4.259 19 N -0.612 5.612 20 Si 0.799 3.201 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.199 1.199 24 C -0.149 4.149 25 C -0.003 4.003 26 N -0.218 5.218 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.236 0.764 31 H 0.191 0.809 32 H 0.163 0.837 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.210 0.790 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.890 14.991 -11.646 21.404 hybrid contribution -0.406 -0.686 1.166 1.413 sum 9.484 14.304 -10.480 20.109 Atomic orbital electron populations 1.20761 0.83422 1.05275 1.05227 1.23969 0.99639 0.82959 0.89619 1.68339 1.11373 1.30027 1.13383 1.24075 0.88843 0.99747 0.87457 1.23152 1.04510 0.92426 0.99822 1.21592 0.90411 0.94776 0.96173 1.18106 0.85422 0.83353 0.78007 1.90749 1.16795 1.85968 1.50144 1.48101 1.13491 1.07258 1.62115 1.22770 0.79942 1.06562 0.94177 1.22367 1.02102 0.96322 0.97837 1.21267 0.93074 0.89363 0.86842 1.86363 1.26144 1.73709 1.50610 1.21434 0.86017 0.97572 0.94798 1.42373 1.02001 1.73521 1.20115 1.19541 0.91544 1.31394 0.95656 0.91162 1.25455 0.95882 1.02832 1.01706 1.69763 1.00231 1.53488 1.37708 0.85208 0.77129 0.78027 0.79769 1.21452 1.22027 1.19872 1.21830 0.93097 1.02802 0.97195 1.21625 0.98405 0.82848 0.97442 1.68150 1.08502 1.30302 1.14856 0.87939 0.89188 0.88226 0.76388 0.80901 0.83719 0.91044 0.90938 0.91831 0.76980 0.96001 0.95712 0.78961 0.93841 0.88824 0.89842 0.90290 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.31 71.24 0.73 -0.58 16 2 C 0.30 6.16 7.64 138.79 1.06 7.22 16 3 N -0.52 -9.57 10.32 -187.87 -1.94 -11.51 16 4 C 0.17 2.33 11.31 84.77 0.96 3.29 16 5 C -0.18 -3.11 9.72 22.71 0.22 -2.89 16 6 C 0.12 2.77 6.52 41.98 0.27 3.04 16 7 C 0.56 15.70 7.65 86.96 0.67 16.36 16 8 O -0.56 -17.45 16.00 -3.64 -0.06 -17.51 16 9 N -0.58 -15.79 2.98 -822.47 -2.45 -18.24 16 10 C 0.09 2.37 5.77 86.22 0.50 2.87 16 11 C -0.15 -4.54 4.91 30.53 0.15 -4.39 16 12 C 0.14 4.31 0.71 -10.76 -0.01 4.30 16 13 O -0.56 -18.59 11.70 -148.98 -1.74 -20.33 16 14 C 0.13 5.06 5.40 86.38 0.47 5.52 16 15 N -0.74 -35.41 5.07 -343.45 -1.74 -37.15 16 16 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 17 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 18 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 19 N -0.96 -56.10 13.06 21.65 0.28 -55.82 16 20 Si 0.97 45.11 29.55 68.60 2.03 47.13 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 C -0.11 -2.96 5.11 30.67 0.16 -2.80 16 25 C 0.12 3.09 6.19 86.36 0.53 3.63 16 26 N -0.50 -11.64 6.36 -177.08 -1.13 -12.76 16 27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.22 1.04 8.06 -2.91 -0.02 1.02 16 31 H 0.17 2.50 7.86 -2.91 -0.02 2.47 16 32 H 0.15 3.82 3.91 -58.74 -0.23 3.59 16 33 H 0.07 1.99 7.81 -2.39 -0.02 1.97 16 34 H 0.07 2.52 6.82 -2.39 -0.02 2.51 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.38 12.93 7.85 -74.06 -0.58 12.35 16 37 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.38 18.59 5.58 -92.71 -0.52 18.07 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.08 2.10 7.81 -2.39 -0.02 2.08 16 44 H 0.09 2.40 7.01 -2.39 -0.02 2.39 16 Total: -1.00 -67.78 357.09 0.00 -67.79 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.27 Total: 38.78 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 7.02 Total: 19.63 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -6.97 Total: -135.48 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.80 Total: -37.84 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.78 0.00 -67.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755156675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.063 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds