Wall clock time and date at job start Tue Mar 31 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47008 * 2 1 4 4 C 1.50693 * 109.47296 * 240.00112 * 2 1 3 5 5 H 1.08008 * 120.00141 * 239.99747 * 4 2 1 6 6 C 1.37875 * 120.00357 * 59.99805 * 4 2 1 7 7 N 1.31517 * 119.99945 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47144 * 89.99749 * 8 6 4 10 10 H 1.48493 * 109.46916 * 210.00037 * 8 6 4 11 11 H 1.48501 * 109.46790 * 329.99867 * 8 6 4 12 12 N 1.46504 * 109.47126 * 119.99718 * 2 1 3 13 13 C 1.46489 * 120.00051 * 60.00277 * 12 2 1 14 14 S 1.65606 * 119.99819 * 240.00030 * 12 2 1 15 15 O 1.42105 * 106.40008 * 156.45998 * 14 12 2 16 16 O 1.42098 * 106.40370 * 23.54183 * 14 12 2 17 17 N 1.65595 * 107.22013 * 269.99910 * 14 12 2 18 18 C 1.47424 * 125.65026 * 269.69506 * 17 14 12 19 19 C 1.55130 * 104.72314 * 155.81322 * 18 17 14 20 20 H 1.08995 * 110.93946 * 155.28632 * 19 18 17 21 21 C 1.52998 * 111.19680 * 279.19503 * 19 18 17 22 22 C 1.55167 * 101.48435 * 37.29840 * 19 18 17 23 23 C 1.52998 * 110.72270 * 82.69251 * 22 19 18 24 24 C 1.52998 * 110.71955 * 205.96706 * 22 19 18 25 25 O 1.42897 * 109.47077 * 174.97359 * 24 22 19 26 26 C 1.47024 * 125.64769 * 90.00292 * 17 14 12 27 27 H 1.08991 * 109.47105 * 60.00326 * 1 2 3 28 28 H 1.08995 * 109.46580 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47051 * 299.99860 * 1 2 3 30 30 H 0.96992 * 119.99961 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47302 * 269.99851 * 13 12 2 32 32 H 1.09005 * 109.47350 * 29.99843 * 13 12 2 33 33 H 1.08996 * 109.47412 * 149.99906 * 13 12 2 34 34 H 1.08992 * 110.36680 * 274.74523 * 18 17 14 35 35 H 1.09003 * 110.36383 * 37.07276 * 18 17 14 36 36 H 1.09001 * 109.47045 * 172.18729 * 21 19 18 37 37 H 1.09001 * 109.47024 * 292.18518 * 21 19 18 38 38 H 1.09001 * 109.47529 * 52.18420 * 21 19 18 39 39 H 1.09006 * 109.47075 * 305.02924 * 23 22 19 40 40 H 1.09003 * 109.47254 * 65.02033 * 23 22 19 41 41 H 1.08995 * 109.47449 * 185.02770 * 23 22 19 42 42 H 1.08998 * 109.46940 * 294.97457 * 24 22 19 43 43 H 1.08999 * 109.47196 * 54.97616 * 24 22 19 44 44 H 0.96699 * 114.00223 * 180.02562 * 25 24 22 45 45 H 1.09006 * 109.87718 * 300.43924 * 26 17 14 46 46 H 1.08995 * 109.88280 * 61.60420 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6295 -1.7583 -3.7121 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0930 1.4281 14 16 2.9705 0.1144 2.2863 15 8 2.8228 -0.5644 3.5260 16 8 2.6904 1.4974 2.1193 17 7 4.5438 -0.1040 1.8181 18 6 5.4256 -1.2020 2.2544 19 6 6.4857 -1.3272 1.1288 20 1 7.4060 -1.7712 1.5081 21 6 5.9421 -2.1275 -0.0565 22 6 6.7035 0.1598 0.7427 23 6 7.6940 0.8277 1.6985 24 6 7.1825 0.2784 -0.7055 25 8 7.2621 1.6580 -1.0693 26 6 5.2946 0.7685 0.9035 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7090 1.1613 -3.4844 31 1 0.7377 -2.1443 1.9994 32 1 1.5296 -2.5968 0.4709 33 1 2.4630 -2.5817 1.9865 34 1 5.9026 -0.9517 3.2019 35 1 4.8597 -2.1290 2.3467 36 1 6.6521 -2.0813 -0.8823 37 1 5.7987 -3.1661 0.2416 38 1 4.9883 -1.7054 -0.3732 39 1 7.3488 0.7032 2.7249 40 1 8.6749 0.3656 1.5867 41 1 7.7641 1.8901 1.4651 42 1 8.1668 -0.1800 -0.8013 43 1 6.4788 -0.2309 -1.3639 44 1 7.5596 1.8089 -1.9770 45 1 4.7951 0.8080 -0.0646 46 1 5.3697 1.7707 1.3253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595382303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:45 Heat of formation + Delta-G solvation = -126.471361 kcal Electronic energy + Delta-G solvation = -28304.896258 eV Core-core repulsion = 24549.365795 eV Total energy + Delta-G solvation = -3755.530463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.69242 -36.65681 -36.27672 -36.10866 -35.19923 -32.61931 -32.59593 -31.01706 -29.07067 -27.58791 -25.51822 -25.35951 -25.18868 -24.95026 -21.41792 -20.67930 -18.79628 -18.46294 -17.36361 -17.04619 -16.78870 -16.40140 -15.41172 -15.34222 -14.80253 -14.59750 -14.31132 -13.80825 -13.47137 -13.25983 -13.13363 -12.88421 -12.72217 -12.32658 -12.32129 -12.13710 -11.97798 -11.89422 -11.83630 -11.70688 -11.48933 -11.37028 -11.22026 -10.98731 -10.87667 -10.84135 -10.63073 -10.44415 -10.39154 -10.29023 -10.20911 -10.07417 -9.79818 -9.29420 -8.58134 -8.49466 -7.93339 -6.10310 -4.18600 1.23315 3.20575 3.28052 3.29021 3.53576 4.09805 4.21221 4.32746 4.47520 4.61459 4.96823 5.09581 5.13749 5.20060 5.33443 5.37187 5.46857 5.55124 5.57771 5.71241 5.74185 5.85973 5.90624 5.96573 5.99961 6.12736 6.18118 6.19742 6.25806 6.36118 6.41923 6.50257 6.58216 6.65166 6.75703 6.89200 6.93215 7.13420 7.51663 7.62581 7.71143 7.78646 8.05213 8.25987 8.84232 9.47153 10.94797 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.007443 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.437821 B = 3760.861014 C = 5197.252454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.793 3.207 15 O -0.996 6.996 16 O -0.976 6.976 17 N -1.017 6.017 18 C 0.132 3.868 19 C -0.089 4.089 20 H 0.085 0.915 21 C -0.153 4.153 22 C -0.065 4.065 23 C -0.132 4.132 24 C 0.088 3.912 25 O -0.569 6.569 26 C 0.141 3.859 27 H 0.092 0.908 28 H 0.032 0.968 29 H 0.011 0.989 30 H 0.263 0.737 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.377 0.623 45 H 0.079 0.921 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 -4.900 4.102 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.832 5.832 13 C -0.038 4.038 14 S 2.804 3.196 15 O -0.980 6.980 16 O -0.961 6.961 17 N -0.856 5.856 18 C 0.006 3.994 19 C -0.109 4.109 20 H 0.103 0.897 21 C -0.210 4.210 22 C -0.066 4.066 23 C -0.189 4.189 24 C 0.010 3.990 25 O -0.374 6.374 26 C 0.015 3.985 27 H 0.111 0.889 28 H 0.051 0.949 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.224 0.776 45 H 0.097 0.903 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.782 -4.176 5.380 13.609 hybrid contribution 0.571 -0.862 -1.885 2.150 sum 12.354 -5.038 3.495 13.792 Atomic orbital electron populations 1.22051 0.98036 0.99596 1.00714 1.18720 0.91812 0.92729 0.80255 0.92432 1.21347 1.31787 1.12984 0.90080 0.91928 1.24914 0.95041 0.94936 0.98878 1.69880 1.36218 1.22509 1.23737 0.86580 0.79153 0.79342 0.82749 1.20749 1.21240 1.19956 1.57814 1.64091 1.21347 1.39942 1.21157 0.98814 0.82136 1.01694 1.01495 0.71651 0.73383 0.73039 1.93530 1.85876 1.76485 1.42115 1.93576 1.83510 1.32200 1.86782 1.59159 1.28949 1.36600 1.60890 1.21949 0.91426 0.89649 0.96402 1.22412 0.98326 0.94007 0.96188 0.89683 1.21894 1.02686 0.99505 0.96925 1.21621 0.95420 0.95243 0.94353 1.21743 0.97506 1.01186 0.98495 1.22267 0.99071 0.82728 0.94951 1.86482 1.91020 1.25060 1.34815 1.21637 0.90130 0.92694 0.94001 0.88941 0.94922 0.96955 0.92662 0.93984 0.90277 0.93418 0.91788 0.91001 0.92548 0.92550 0.90374 0.92475 0.92869 0.91598 0.93868 0.92264 0.77630 0.90286 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.97 37.16 0.33 -3.13 16 2 C 0.27 6.52 2.62 -69.08 -0.18 6.34 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -13.02 7.99 -34.44 -0.28 -13.30 16 5 H 0.06 1.51 7.33 -52.48 -0.38 1.12 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.04 11.32 55.43 0.63 -23.41 16 8 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 N -0.99 -20.79 3.12 -115.86 -0.36 -21.15 16 13 C 0.11 1.95 9.28 59.84 0.56 2.50 16 14 S 2.79 57.54 6.30 -107.50 -0.68 56.86 16 15 O -1.00 -21.14 16.79 -57.17 -0.96 -22.10 16 16 O -0.98 -23.36 16.28 -57.17 -0.93 -24.29 16 17 N -1.02 -17.44 3.74 -111.29 -0.42 -17.85 16 18 C 0.13 1.80 6.14 -2.41 -0.01 1.78 16 19 C -0.09 -1.05 3.03 -88.35 -0.27 -1.31 16 20 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 21 C -0.15 -1.89 8.12 37.16 0.30 -1.59 16 22 C -0.06 -0.84 0.58 -152.67 -0.09 -0.93 16 23 C -0.13 -1.52 8.28 37.16 0.31 -1.21 16 24 C 0.09 1.06 4.98 37.16 0.19 1.25 16 25 O -0.57 -7.22 12.92 -35.23 -0.46 -7.67 16 26 C 0.14 2.36 5.59 -3.06 -0.02 2.35 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 28 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 33 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 34 H 0.06 0.79 7.69 -51.93 -0.40 0.39 16 35 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 36 H 0.06 0.62 6.66 -51.93 -0.35 0.28 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.22 7.91 -51.93 -0.41 0.81 16 39 H 0.06 0.65 7.42 -51.93 -0.39 0.26 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.77 6.41 -51.93 -0.33 0.44 16 44 H 0.38 3.18 9.12 45.56 0.42 3.60 16 45 H 0.08 1.51 7.82 -51.93 -0.41 1.10 16 46 H 0.07 1.16 7.84 -51.93 -0.41 0.75 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -31.38 368.88 -8.88 -40.27 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.99 Total: 4.63 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 0.74 Total: -5.67 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.15 Total: -62.42 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -2.35 Total: -54.06 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 57.54 SS G_CDS: -0.68 Total: 56.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.38 -8.88 -40.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595382303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.206 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds