Wall clock time and date at job start Tue Mar 31 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47008 * 2 1 4 4 C 1.50693 * 109.47296 * 240.00112 * 2 1 3 5 5 H 1.08008 * 120.00141 * 239.99747 * 4 2 1 6 6 C 1.37875 * 120.00357 * 59.99805 * 4 2 1 7 7 N 1.31517 * 119.99945 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47144 * 89.99749 * 8 6 4 10 10 H 1.48493 * 109.46916 * 210.00037 * 8 6 4 11 11 H 1.48501 * 109.46790 * 329.99867 * 8 6 4 12 12 N 1.46504 * 109.47126 * 119.99718 * 2 1 3 13 13 C 1.46489 * 120.00051 * 60.00277 * 12 2 1 14 14 S 1.65606 * 119.99819 * 240.00030 * 12 2 1 15 15 O 1.42105 * 106.40008 * 156.45998 * 14 12 2 16 16 O 1.42098 * 106.40370 * 23.54183 * 14 12 2 17 17 N 1.65595 * 107.22013 * 269.99910 * 14 12 2 18 18 C 1.47424 * 125.65026 * 269.69506 * 17 14 12 19 19 C 1.55130 * 104.72314 * 155.81322 * 18 17 14 20 20 H 1.08995 * 110.93946 * 155.28632 * 19 18 17 21 21 C 1.52998 * 111.19680 * 279.19503 * 19 18 17 22 22 C 1.55167 * 101.48435 * 37.29840 * 19 18 17 23 23 C 1.52998 * 110.72270 * 82.69251 * 22 19 18 24 24 C 1.52998 * 110.71955 * 205.96706 * 22 19 18 25 25 O 1.42897 * 109.47077 * 174.97359 * 24 22 19 26 26 C 1.47024 * 125.64769 * 90.00292 * 17 14 12 27 27 H 1.08991 * 109.47105 * 60.00326 * 1 2 3 28 28 H 1.08995 * 109.46580 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47051 * 299.99860 * 1 2 3 30 30 H 0.96992 * 119.99961 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47302 * 269.99851 * 13 12 2 32 32 H 1.09005 * 109.47350 * 29.99843 * 13 12 2 33 33 H 1.08996 * 109.47412 * 149.99906 * 13 12 2 34 34 H 1.08992 * 110.36680 * 274.74523 * 18 17 14 35 35 H 1.09003 * 110.36383 * 37.07276 * 18 17 14 36 36 H 1.09001 * 109.47045 * 172.18729 * 21 19 18 37 37 H 1.09001 * 109.47024 * 292.18518 * 21 19 18 38 38 H 1.09001 * 109.47529 * 52.18420 * 21 19 18 39 39 H 1.09006 * 109.47075 * 305.02924 * 23 22 19 40 40 H 1.09003 * 109.47254 * 65.02033 * 23 22 19 41 41 H 1.08995 * 109.47449 * 185.02770 * 23 22 19 42 42 H 1.08998 * 109.46940 * 294.97457 * 24 22 19 43 43 H 1.08999 * 109.47196 * 54.97616 * 24 22 19 44 44 H 0.96699 * 114.00223 * 180.02562 * 25 24 22 45 45 H 1.09006 * 109.87718 * 300.43924 * 26 17 14 46 46 H 1.08995 * 109.88280 * 61.60420 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6295 -1.7583 -3.7121 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0930 1.4281 14 16 2.9705 0.1144 2.2863 15 8 2.8228 -0.5644 3.5260 16 8 2.6904 1.4974 2.1193 17 7 4.5438 -0.1040 1.8181 18 6 5.4256 -1.2020 2.2544 19 6 6.4857 -1.3272 1.1288 20 1 7.4060 -1.7712 1.5081 21 6 5.9421 -2.1275 -0.0565 22 6 6.7035 0.1598 0.7427 23 6 7.6940 0.8277 1.6985 24 6 7.1825 0.2784 -0.7055 25 8 7.2621 1.6580 -1.0693 26 6 5.2946 0.7685 0.9035 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7090 1.1613 -3.4844 31 1 0.7377 -2.1443 1.9994 32 1 1.5296 -2.5968 0.4709 33 1 2.4630 -2.5817 1.9865 34 1 5.9026 -0.9517 3.2019 35 1 4.8597 -2.1290 2.3467 36 1 6.6521 -2.0813 -0.8823 37 1 5.7987 -3.1661 0.2416 38 1 4.9883 -1.7054 -0.3732 39 1 7.3488 0.7032 2.7249 40 1 8.6749 0.3656 1.5867 41 1 7.7641 1.8901 1.4651 42 1 8.1668 -0.1800 -0.8013 43 1 6.4788 -0.2309 -1.3639 44 1 7.5596 1.8089 -1.9770 45 1 4.7951 0.8080 -0.0646 46 1 5.3697 1.7707 1.3253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595382303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:44 Heat of formation + Delta-G solvation = -150.780120 kcal Electronic energy + Delta-G solvation = -28305.950365 eV Core-core repulsion = 24549.365795 eV Total energy + Delta-G solvation = -3756.584569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.77647 -38.39829 -37.89523 -37.28107 -36.95376 -34.50431 -33.79594 -32.02712 -30.94210 -28.63666 -27.26844 -27.01167 -26.41271 -26.10300 -22.68809 -22.37020 -20.03285 -19.82414 -18.82431 -18.49021 -18.32903 -18.07792 -17.10848 -16.59531 -16.31891 -15.84830 -15.38539 -15.29495 -14.91392 -14.80912 -14.54822 -14.20772 -14.05887 -13.75015 -13.52029 -13.48562 -13.35179 -13.25839 -13.20381 -13.12092 -13.06551 -13.01343 -12.79379 -12.76540 -12.65410 -12.23817 -12.16957 -11.99088 -11.90092 -11.63532 -11.35285 -11.29038 -11.17950 -10.74151 -10.49635 -9.96951 -9.64778 -8.07766 -6.22460 -0.39235 1.44606 1.45778 1.55068 1.97597 2.45349 2.55028 3.11146 3.20770 3.33121 3.52211 3.71373 4.05447 4.10407 4.17945 4.29868 4.37185 4.50637 4.63453 4.64076 4.67503 4.71582 4.76652 4.78429 4.91575 4.93897 4.95914 4.97951 5.01484 5.09066 5.11942 5.18634 5.23179 5.23633 5.27335 5.40761 5.47352 5.58077 5.63642 5.73439 5.86889 6.10321 6.28945 6.86328 6.97212 7.46743 8.97267 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.007443 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.437821 B = 3760.861014 C = 5197.252454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.275 3.725 3 H 0.017 0.983 4 C -0.521 4.521 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.291 1.291 11 H -0.259 1.259 12 N -0.996 5.996 13 C 0.102 3.898 14 S 2.804 3.196 15 O -1.001 7.001 16 O -1.019 7.019 17 N -1.015 6.015 18 C 0.117 3.883 19 C -0.077 4.077 20 H 0.126 0.874 21 C -0.152 4.152 22 C -0.062 4.062 23 C -0.127 4.127 24 C 0.088 3.912 25 O -0.591 6.591 26 C 0.141 3.859 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.015 0.985 30 H 0.262 0.738 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.394 0.606 45 H 0.044 0.956 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.118 -7.479 4.231 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.171 3.829 3 H 0.035 0.965 4 C -0.560 4.560 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.217 1.217 11 H -0.183 1.183 12 N -0.837 5.837 13 C -0.043 4.043 14 S 2.816 3.184 15 O -0.985 6.985 16 O -1.003 7.003 17 N -0.856 5.856 18 C -0.007 4.007 19 C -0.096 4.096 20 H 0.144 0.856 21 C -0.209 4.209 22 C -0.064 4.064 23 C -0.185 4.185 24 C 0.010 3.990 25 O -0.399 6.399 26 C 0.015 3.985 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.243 0.757 45 H 0.063 0.937 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.424 -6.783 5.525 16.869 hybrid contribution -0.234 -0.033 -1.878 1.893 sum 14.189 -6.816 3.647 16.159 Atomic orbital electron populations 1.21942 0.97984 1.00066 0.99778 1.18372 0.91810 0.91134 0.81630 0.96510 1.21551 1.31301 1.12895 0.90270 0.91055 1.25701 0.95263 0.95560 1.01865 1.70031 1.37629 1.24085 1.24199 0.85574 0.79227 0.78074 0.78872 1.20390 1.21694 1.18329 1.57699 1.64808 1.22534 1.38670 1.21369 1.00282 0.80426 1.02237 1.00918 0.72312 0.72351 0.72854 1.93511 1.86414 1.76290 1.42324 1.93517 1.84606 1.34917 1.87284 1.58858 1.28020 1.37901 1.60824 1.22374 0.91598 0.88684 0.98047 1.22439 0.99093 0.92975 0.95118 0.85632 1.21878 1.01100 1.00160 0.97764 1.21700 0.92907 0.96038 0.95747 1.21709 0.98393 1.00408 0.97945 1.22301 1.00330 0.82505 0.93841 1.86447 1.91317 1.25676 1.36429 1.21640 0.92489 0.92476 0.91910 0.91161 0.93586 0.96611 0.92873 0.93166 0.90297 0.90794 0.89967 0.90128 0.91057 0.90945 0.94298 0.92362 0.89948 0.93072 0.90478 0.93745 0.75695 0.93737 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.81 8.97 71.98 0.65 -6.16 16 2 C 0.27 13.83 2.62 44.24 0.12 13.95 16 3 H 0.02 0.99 6.91 -2.39 -0.02 0.98 16 4 C -0.52 -26.31 7.99 25.60 0.20 -26.11 16 5 H 0.07 3.41 7.33 -2.91 -0.02 3.39 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -51.55 11.32 21.45 0.24 -51.30 16 8 Si 0.96 40.72 29.54 68.60 2.03 42.75 16 9 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 10 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 12 N -1.00 -42.27 3.12 -520.47 -1.62 -43.89 16 13 C 0.10 3.55 9.28 127.77 1.19 4.74 16 14 S 2.80 117.46 6.30 -56.49 -0.36 117.10 16 15 O -1.00 -41.87 16.79 -128.00 -2.15 -44.02 16 16 O -1.02 -51.21 16.28 -128.00 -2.08 -53.30 16 17 N -1.02 -34.65 3.74 -506.02 -1.89 -36.54 16 18 C 0.12 2.91 6.14 86.93 0.53 3.44 16 19 C -0.08 -1.52 3.03 -9.32 -0.03 -1.55 16 20 H 0.13 1.61 8.04 -2.39 -0.02 1.59 16 21 C -0.15 -3.32 8.12 71.98 0.58 -2.73 16 22 C -0.06 -1.49 0.58 -50.99 -0.03 -1.52 16 23 C -0.13 -2.58 8.28 71.98 0.60 -1.98 16 24 C 0.09 1.94 4.98 71.98 0.36 2.30 16 25 O -0.59 -14.48 12.92 -148.98 -1.92 -16.40 16 26 C 0.14 4.82 5.59 86.73 0.48 5.31 16 27 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 28 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 29 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 2.74 7.02 -2.38 -0.02 2.72 16 33 H 0.07 2.15 7.79 -2.39 -0.02 2.13 16 34 H 0.08 1.77 7.69 -2.39 -0.02 1.75 16 35 H 0.08 1.86 8.06 -2.39 -0.02 1.84 16 36 H 0.07 1.34 6.66 -2.39 -0.02 1.32 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.16 7.91 -2.39 -0.02 1.14 16 39 H 0.06 1.16 7.42 -2.38 -0.02 1.14 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 1.19 7.87 -2.39 -0.02 1.17 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.04 1.11 6.41 -2.39 -0.02 1.09 16 44 H 0.39 6.22 9.12 -74.06 -0.68 5.55 16 45 H 0.04 1.81 7.82 -2.38 -0.02 1.79 16 46 H 0.05 1.80 7.84 -2.39 -0.02 1.78 16 Total: -1.00 -70.14 368.88 -2.37 -72.51 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.29 Total: 22.18 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.10 Total: -9.07 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -3.27 Total: -131.74 kcal Atomic # 8 Polarization: -107.56 SS G_CDS: -6.16 Total: -113.72 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 16 Polarization: 117.46 SS G_CDS: -0.36 Total: 117.10 kcal Total: -70.14 -2.37 -72.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595382303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.273 kcal (2) G-P(sol) polarization free energy of solvation -70.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds