Wall clock time and date at job start Tue Mar 31 2020 04:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47092 * 2 1 4 4 C 1.46506 * 119.99652 * 275.00032 * 3 2 1 5 5 C 1.50690 * 109.46978 * 273.77003 * 4 3 2 6 6 H 1.08001 * 120.00579 * 4.88395 * 5 4 3 7 7 C 1.37884 * 120.00122 * 184.87774 * 5 4 3 8 8 N 1.31518 * 119.99722 * 5.22589 * 7 5 4 9 9 Si 1.86797 * 120.00370 * 185.22107 * 7 5 4 10 10 H 1.48500 * 109.47044 * 94.98587 * 9 7 5 11 11 H 1.48492 * 109.47271 * 214.99053 * 9 7 5 12 12 H 1.48497 * 109.46962 * 334.98873 * 9 7 5 13 13 S 1.65601 * 120.00069 * 94.99722 * 3 2 1 14 14 O 1.42099 * 106.40284 * 332.14579 * 13 3 2 15 15 O 1.42102 * 106.39810 * 199.22274 * 13 3 2 16 16 N 1.65599 * 107.21772 * 85.68758 * 13 3 2 17 17 C 1.46497 * 120.00139 * 83.17070 * 16 13 3 18 18 C 1.46500 * 119.99722 * 263.17425 * 16 13 3 19 19 C 1.52996 * 109.46846 * 263.39366 * 18 16 13 20 20 O 1.42893 * 110.43817 * 302.16998 * 19 18 16 21 21 C 1.54886 * 110.59993 * 64.79456 * 19 18 16 22 22 C 1.54889 * 102.75099 * 156.67328 * 21 19 18 23 23 C 1.54262 * 104.19589 * 322.05495 * 22 21 19 24 24 C 1.53875 * 106.59845 * 23.61019 * 23 22 21 25 25 H 1.09000 * 109.46622 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47174 * 299.99952 * 1 2 3 27 27 H 1.08995 * 109.47601 * 60.00315 * 1 2 3 28 28 H 1.08997 * 109.47387 * 239.99850 * 2 1 3 29 29 H 1.09002 * 109.47516 * 119.99336 * 2 1 3 30 30 H 1.08997 * 109.47085 * 33.77629 * 4 3 2 31 31 H 1.09002 * 109.46769 * 153.76808 * 4 3 2 32 32 H 0.96996 * 120.00073 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47199 * 270.00376 * 17 16 13 34 34 H 1.09000 * 109.47213 * 30.00495 * 17 16 13 35 35 H 1.08998 * 109.47035 * 150.00354 * 17 16 13 36 36 H 1.09001 * 109.47131 * 143.39441 * 18 16 13 37 37 H 1.09003 * 109.47298 * 23.39350 * 18 16 13 38 38 H 0.96709 * 113.99746 * 57.46351 * 20 19 18 39 39 H 1.09001 * 110.75728 * 274.99056 * 21 19 18 40 40 H 1.09004 * 110.76063 * 38.35971 * 21 19 18 41 41 H 1.09005 * 110.48775 * 203.37536 * 22 21 19 42 42 H 1.09004 * 110.48301 * 80.73603 * 22 21 19 43 43 H 1.08997 * 110.03468 * 264.32461 * 23 22 21 44 44 H 1.09000 * 110.03154 * 142.89101 * 23 22 21 45 45 H 1.08994 * 110.03382 * 240.71646 * 24 23 22 46 46 H 1.09002 * 110.03518 * 119.28621 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.5068 1.8124 -1.8674 6 1 4.1596 1.0887 -1.4020 7 6 3.9076 2.4652 -3.0139 8 7 3.1591 3.4192 -3.5232 9 14 5.5136 1.9946 -3.8438 10 1 5.2434 1.0107 -4.9228 11 1 6.1439 3.2067 -4.4256 12 1 6.4301 1.3921 -2.8428 13 16 2.4121 2.1203 1.4287 14 8 1.6109 1.5093 2.4307 15 8 2.4047 3.5181 1.1727 16 7 3.9807 1.7165 1.7734 17 6 5.0812 2.4683 1.1655 18 6 4.2677 0.6072 2.6863 19 6 4.5210 1.1561 4.0918 20 8 5.6020 2.0903 4.0754 21 6 3.2402 1.8188 4.6571 22 6 3.4665 1.7495 6.1878 23 6 4.1465 0.3825 6.4082 24 6 4.8170 0.0051 5.0756 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.3746 1.7938 -1.9531 31 1 2.0702 3.1793 -1.0787 32 1 3.4412 3.8787 -4.3295 33 1 5.3608 2.0028 0.2204 34 1 4.7635 3.4952 0.9847 35 1 5.9382 2.4664 1.8390 36 1 5.1518 0.0716 2.3406 37 1 3.4166 -0.0735 2.7100 38 1 5.4689 2.8353 3.4733 39 1 3.1619 2.8539 4.3246 40 1 2.3538 1.2522 4.3716 41 1 2.5142 1.7916 6.7165 42 1 4.1208 2.5582 6.5136 43 1 3.4013 -0.3663 6.6765 44 1 4.8972 0.4614 7.1946 45 1 4.3971 -0.9268 4.6971 46 1 5.8930 -0.0992 5.2153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336956421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:23 Heat of formation + Delta-G solvation = -133.526199 kcal Electronic energy + Delta-G solvation = -27951.054861 eV Core-core repulsion = 24195.218477 eV Total energy + Delta-G solvation = -3755.836383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.44632 -36.73093 -36.05548 -35.54653 -35.23723 -34.38278 -32.74903 -29.99285 -29.65839 -28.70887 -26.69896 -25.87796 -23.83670 -23.15880 -21.74113 -20.67363 -19.93900 -18.46223 -17.26418 -17.09676 -16.45229 -16.31491 -15.97595 -15.52532 -15.30437 -14.78781 -14.29499 -13.85089 -13.72589 -13.45996 -13.34651 -13.02692 -12.87428 -12.46121 -12.22562 -12.16042 -12.01055 -11.89434 -11.70019 -11.60543 -11.38946 -11.33238 -11.18195 -11.13067 -11.07335 -10.99694 -10.94381 -10.60768 -10.53104 -10.48007 -10.31788 -10.05743 -9.96549 -9.78018 -8.61091 -8.49713 -8.07516 -6.14079 -4.20405 1.22553 3.22049 3.29882 3.30932 3.41722 4.02610 4.19235 4.33245 4.56646 4.64248 4.83361 4.89958 5.03632 5.19358 5.20137 5.34946 5.46073 5.46311 5.55602 5.66106 5.72112 5.73706 5.76767 5.79463 5.89597 5.92212 5.99386 6.05182 6.05540 6.19895 6.21622 6.26889 6.32676 6.42284 6.48991 6.60853 6.63406 6.87685 7.30335 7.41994 7.64218 7.72420 7.83131 8.12837 8.84203 9.45237 10.93838 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.005020 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.535040 B = 5576.344169 C = 6380.649340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.992 5.992 4 C 0.244 3.756 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.782 3.218 14 O -0.993 6.993 15 O -0.976 6.976 16 N -1.009 6.009 17 C 0.079 3.921 18 C 0.105 3.895 19 C 0.112 3.888 20 O -0.557 6.557 21 C -0.164 4.164 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.109 4.109 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.264 0.736 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.376 0.624 39 H 0.059 0.941 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.459 -7.179 13.886 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.122 3.878 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.791 3.209 14 O -0.977 6.977 15 O -0.960 6.960 16 N -0.848 5.848 17 C -0.066 4.066 18 C -0.022 4.022 19 C 0.069 3.931 20 O -0.365 6.365 21 C -0.202 4.202 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.147 4.147 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.226 0.774 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.144 -6.882 14.654 16.230 hybrid contribution 0.972 -0.061 -1.417 1.719 sum 2.116 -6.942 13.237 15.096 Atomic orbital electron populations 1.22215 0.96857 1.01371 1.02516 1.20962 0.93709 0.83007 1.01857 1.57803 1.78421 1.22804 1.24281 1.19207 0.97082 0.92546 0.78989 1.21535 1.02223 1.23875 1.10283 0.91914 1.24957 0.97222 0.94461 0.97155 1.69945 1.38294 1.22496 1.21752 0.86580 0.83478 0.78084 0.79831 1.20691 1.21111 1.19763 1.01930 0.72692 0.73560 0.72703 1.93503 1.67226 1.78791 1.58166 1.93574 1.86274 1.30567 1.85557 1.57915 1.25156 1.44221 1.57460 1.21737 0.89234 0.96980 0.98689 1.21878 1.02899 0.88958 0.88451 1.22496 0.86733 0.89930 0.93947 1.86464 1.43444 1.38329 1.68256 1.23489 0.99385 1.01464 0.95843 1.22278 1.00041 0.97213 0.96098 1.22090 0.99337 0.97356 0.97014 1.22085 1.01740 0.96519 0.94331 0.92390 0.92428 0.92136 0.90357 0.92283 0.94838 0.92802 0.92569 0.91055 0.89936 0.91325 0.90046 0.89317 0.77364 0.92202 0.87375 0.91804 0.91735 0.91762 0.91936 0.90400 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.13 2.19 6.06 -4.04 -0.02 2.17 16 3 N -0.99 -19.93 2.82 -115.66 -0.33 -20.25 16 4 C 0.24 5.93 5.42 -5.20 -0.03 5.90 16 5 C -0.54 -13.68 9.09 -34.44 -0.31 -13.99 16 6 H 0.06 1.53 7.20 -52.49 -0.38 1.15 16 7 C 0.07 1.73 5.45 -17.82 -0.10 1.63 16 8 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 9 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 S 2.78 53.65 5.71 -107.50 -0.61 53.03 16 14 O -0.99 -18.52 12.86 -57.17 -0.74 -19.25 16 15 O -0.98 -22.47 15.38 -57.17 -0.88 -23.35 16 16 N -1.01 -16.20 2.93 -121.76 -0.36 -16.55 16 17 C 0.08 1.24 9.76 59.85 0.58 1.83 16 18 C 0.10 1.41 4.63 -4.04 -0.02 1.39 16 19 C 0.11 1.45 1.00 -88.96 -0.09 1.36 16 20 O -0.56 -7.58 12.45 -35.23 -0.44 -8.02 16 21 C -0.16 -2.29 4.66 -24.74 -0.12 -2.40 16 22 C -0.12 -1.39 6.81 -25.07 -0.17 -1.56 16 23 C -0.12 -1.23 6.80 -25.61 -0.17 -1.41 16 24 C -0.11 -1.18 6.12 -25.61 -0.16 -1.34 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 29 H 0.06 0.86 7.73 -51.93 -0.40 0.46 16 30 H 0.03 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.05 1.47 6.90 -51.93 -0.36 1.11 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.07 1.23 7.21 -51.93 -0.37 0.86 16 34 H 0.08 1.41 7.09 -51.93 -0.37 1.05 16 35 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 36 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 37 H 0.09 1.13 7.35 -51.93 -0.38 0.75 16 38 H 0.38 4.79 6.21 45.56 0.28 5.07 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.11 1.63 5.94 -51.93 -0.31 1.32 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 46 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -30.26 367.48 -9.52 -39.77 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.20 Total: 6.76 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.22 Total: -8.64 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.05 Total: -61.03 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -2.05 Total: -50.62 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 53.65 SS G_CDS: -0.61 Total: 53.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.26 -9.52 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336956421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.753 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds