Wall clock time and date at job start Tue Mar 31 2020 04:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.47137 * 2 1 4 4 C 1.46500 * 119.99835 * 275.00115 * 3 2 1 5 5 C 1.50697 * 109.47203 * 277.07014 * 4 3 2 6 6 H 1.08005 * 119.99748 * 4.95175 * 5 4 3 7 7 C 1.37872 * 119.99966 * 184.94380 * 5 4 3 8 8 N 1.31513 * 120.00477 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99829 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47021 * 90.00394 * 9 7 5 11 11 H 1.48502 * 109.46838 * 210.00343 * 9 7 5 12 12 H 1.48504 * 109.46884 * 330.00190 * 9 7 5 13 13 S 1.65599 * 119.99796 * 94.99680 * 3 2 1 14 14 O 1.42092 * 106.40704 * 341.24913 * 13 3 2 15 15 O 1.42108 * 106.40101 * 208.32632 * 13 3 2 16 16 N 1.65606 * 107.21642 * 94.79410 * 13 3 2 17 17 C 1.46501 * 119.99378 * 295.48641 * 16 13 3 18 18 H 1.09006 * 110.01863 * 23.03188 * 17 16 13 19 19 C 1.54260 * 110.03589 * 261.63962 * 17 16 13 20 20 C 1.54969 * 104.16275 * 217.14081 * 19 17 16 21 21 C 1.54887 * 102.77648 * 37.88591 * 20 19 17 22 22 C 1.53875 * 110.03149 * 144.42210 * 17 16 13 23 23 H 1.09001 * 110.03306 * 238.56808 * 22 17 16 24 24 C 1.53002 * 110.02907 * 359.95031 * 22 17 16 25 25 C 1.53001 * 109.46924 * 184.99694 * 24 22 17 26 26 O 1.42902 * 109.47094 * 179.97438 * 25 24 22 27 27 H 1.09000 * 109.47464 * 60.00123 * 1 2 3 28 28 H 1.09001 * 109.47155 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47370 * 299.99878 * 1 2 3 30 30 H 1.08997 * 109.47087 * 239.99889 * 2 1 3 31 31 H 1.09004 * 109.46983 * 119.99747 * 2 1 3 32 32 H 1.09000 * 109.46901 * 37.07206 * 4 3 2 33 33 H 1.09005 * 109.47051 * 157.06857 * 4 3 2 34 34 H 0.96998 * 120.00262 * 179.97438 * 8 7 5 35 35 H 0.96993 * 120.00523 * 115.49185 * 16 13 3 36 36 H 1.09002 * 110.48791 * 335.78396 * 19 17 16 37 37 H 1.08998 * 110.49202 * 98.42453 * 19 17 16 38 38 H 1.08995 * 110.71527 * 279.56889 * 20 19 17 39 39 H 1.09000 * 110.92271 * 156.29422 * 20 19 17 40 40 H 1.09005 * 110.48559 * 203.40977 * 21 20 19 41 41 H 1.09001 * 110.48846 * 80.76429 * 21 20 19 42 42 H 1.08997 * 109.47661 * 304.99810 * 24 22 17 43 43 H 1.09001 * 109.47421 * 65.00154 * 24 22 17 44 44 H 1.08998 * 109.47563 * 300.00412 * 25 24 22 45 45 H 1.09010 * 109.46962 * 60.00538 * 25 24 22 46 46 H 0.96706 * 113.99987 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4728 1.7497 -1.9073 6 1 4.1011 0.9908 -1.4648 7 6 3.8733 2.3899 -3.0609 8 7 3.1084 3.3142 -3.5995 9 14 5.5025 1.9443 -3.8588 10 1 5.2909 0.8472 -4.8370 11 1 6.0520 3.1329 -4.5592 12 1 6.4596 1.4987 -2.8145 13 16 2.4121 2.1202 1.4287 14 8 1.7764 1.3722 2.4560 15 8 2.1971 3.5113 1.2335 16 7 4.0419 1.9254 1.6485 17 6 4.6005 0.5840 1.8351 18 1 3.9285 -0.1624 1.4113 19 6 4.8188 0.3066 3.3368 20 6 6.1354 -0.5094 3.3842 21 6 6.9931 0.1600 2.2818 22 6 5.9822 0.4904 1.1644 23 1 5.9810 -0.3019 0.4158 24 6 6.3394 1.8273 0.5115 25 6 7.6552 1.6845 -0.2561 26 8 7.9886 2.9329 -0.8663 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3406 1.8372 -1.9317 33 1 2.1289 3.1812 -1.0711 34 1 3.3903 3.7648 -4.4109 35 1 4.6266 2.6992 1.6537 36 1 4.9300 1.2419 3.8853 37 1 3.9921 -0.2777 3.7410 38 1 5.9488 -1.5565 3.1460 39 1 6.6163 -0.4161 4.3579 40 1 7.7527 -0.5315 1.9169 41 1 7.4558 1.0718 2.6595 42 1 5.5466 2.1186 -0.1774 43 1 6.4494 2.5901 1.2823 44 1 8.4481 1.3932 0.4328 45 1 7.5452 0.9216 -1.0269 46 1 8.8135 2.9163 -1.3707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337168421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:24 Heat of formation + Delta-G solvation = -144.230524 kcal Electronic energy + Delta-G solvation = -28020.069969 eV Core-core repulsion = 24263.769412 eV Total energy + Delta-G solvation = -3756.300558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.14601 -36.63149 -36.41229 -35.98870 -35.14632 -33.14837 -32.67555 -31.83647 -29.90626 -27.06740 -26.63297 -26.47637 -23.13523 -22.50626 -21.66716 -20.69790 -19.54765 -18.65906 -17.29177 -17.09656 -16.73238 -16.29471 -15.83837 -15.48120 -15.25277 -14.83285 -14.40272 -14.09276 -13.81036 -13.45795 -13.29983 -13.10580 -12.87971 -12.47429 -12.06768 -12.02290 -11.89069 -11.71724 -11.64234 -11.43262 -11.32393 -11.04441 -11.01947 -10.96496 -10.88160 -10.66956 -10.61327 -10.53397 -10.50868 -10.41030 -10.22859 -9.99449 -9.76920 -9.58880 -9.02792 -8.45422 -8.02332 -6.06826 -4.13263 1.37771 3.28628 3.35844 3.37514 3.57186 4.18354 4.39179 4.43075 4.60954 4.66990 4.95070 5.08928 5.27235 5.30702 5.33600 5.38923 5.48576 5.51859 5.61025 5.62819 5.66896 5.74188 5.79024 5.82538 5.86769 5.90142 5.95246 6.07952 6.12541 6.21205 6.30936 6.32556 6.46145 6.61000 6.67106 6.70055 6.77666 7.29740 7.43775 7.53199 7.71858 7.85500 7.89955 8.19735 8.91146 9.52946 11.00992 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009287 B = 0.008495 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.359791 B = 3295.433559 C = 5352.433659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 N -0.992 5.992 4 C 0.246 3.754 5 C -0.535 4.535 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.263 1.263 13 S 2.783 3.217 14 O -1.000 7.000 15 O -0.984 6.984 16 N -1.118 6.118 17 C 0.165 3.835 18 H 0.085 0.915 19 C -0.138 4.138 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.091 4.091 23 H 0.081 0.919 24 C -0.123 4.123 25 C 0.079 3.921 26 O -0.568 6.568 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.052 0.948 34 H 0.263 0.737 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.044 0.956 46 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.237 -8.607 9.755 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.833 5.833 4 C 0.124 3.876 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.187 1.187 13 S 2.791 3.209 14 O -0.983 6.983 15 O -0.968 6.968 16 N -0.878 5.878 17 C 0.057 3.943 18 H 0.103 0.897 19 C -0.178 4.178 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.111 4.111 23 H 0.099 0.901 24 C -0.161 4.161 25 C 0.001 3.999 26 O -0.372 6.372 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.911 -7.973 10.471 14.428 hybrid contribution 1.979 -0.273 -1.275 2.370 sum 7.890 -8.246 9.196 14.657 Atomic orbital electron populations 1.22194 0.97003 1.01324 1.02323 1.21017 0.93726 0.83115 1.02000 1.57715 1.78639 1.22759 1.24208 1.19178 0.97191 0.92316 0.78926 1.21498 1.04596 1.21874 1.09445 0.91807 1.24940 0.97090 0.94706 0.96991 1.69933 1.37384 1.24748 1.20700 0.86613 0.84292 0.77637 0.79474 1.21419 1.21456 1.18708 1.01767 0.72978 0.73066 0.73045 1.93535 1.74564 1.73698 1.56549 1.93589 1.84586 1.32207 1.86392 1.56188 1.28594 1.13571 1.89428 1.21212 0.95089 0.83418 0.94595 0.89736 1.22908 0.97667 1.00709 0.96509 1.22469 0.95814 0.99233 0.98639 1.22509 0.97419 1.00428 0.95564 1.21900 0.93968 0.98146 0.97075 0.90076 1.21698 0.97766 0.96489 1.00099 1.22208 0.96639 0.85782 0.95251 1.86556 1.45548 1.33937 1.71175 0.92060 0.92391 0.92812 0.90246 0.91866 0.94857 0.93044 0.92701 0.74973 0.90879 0.90833 0.91448 0.91665 0.91820 0.91406 0.87605 0.91730 0.94605 0.93808 0.78314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 37.16 0.38 -2.28 16 2 C 0.13 2.17 5.85 -4.04 -0.02 2.15 16 3 N -0.99 -19.99 2.83 -115.66 -0.33 -20.32 16 4 C 0.25 6.00 5.45 -5.20 -0.03 5.98 16 5 C -0.53 -13.50 8.75 -34.44 -0.30 -13.80 16 6 H 0.06 1.52 7.36 -52.48 -0.39 1.14 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.26 -5.65 6.13 56.52 0.35 -5.31 16 13 S 2.78 55.12 6.01 -107.50 -0.65 54.47 16 14 O -1.00 -20.07 16.72 -57.17 -0.96 -21.02 16 15 O -0.98 -23.24 16.78 -57.17 -0.96 -24.20 16 16 N -1.12 -18.42 4.61 -3.94 -0.02 -18.44 16 17 C 0.17 2.31 3.46 -66.81 -0.23 2.07 16 18 H 0.08 1.18 6.81 -51.93 -0.35 0.82 16 19 C -0.14 -1.67 6.54 -25.03 -0.16 -1.84 16 20 C -0.12 -1.21 6.91 -24.70 -0.17 -1.38 16 21 C -0.12 -1.26 5.54 -25.07 -0.14 -1.40 16 22 C -0.09 -1.18 2.93 -89.50 -0.26 -1.44 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 24 C -0.12 -1.89 3.65 -26.73 -0.10 -1.99 16 25 C 0.08 1.14 6.77 37.16 0.25 1.39 16 26 O -0.57 -9.08 13.66 -35.23 -0.48 -9.57 16 27 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 31 H 0.06 0.95 6.54 -51.93 -0.34 0.61 16 32 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 33 H 0.05 1.41 6.95 -51.93 -0.36 1.05 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.41 6.59 6.56 -34.48 -0.23 6.36 16 36 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 42 H 0.11 2.03 6.42 -51.93 -0.33 1.70 16 43 H 0.06 0.94 7.04 -51.93 -0.37 0.58 16 44 H 0.04 0.42 7.51 -51.93 -0.39 0.03 16 45 H 0.04 0.66 7.31 -51.92 -0.38 0.28 16 46 H 0.37 4.15 9.12 45.56 0.42 4.56 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -32.57 372.39 -9.90 -42.47 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.95 Total: 11.08 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.88 Total: -10.86 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 0.39 Total: -63.52 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -2.40 Total: -54.79 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 55.12 SS G_CDS: -0.65 Total: 54.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.57 -9.90 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337168421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.759 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds