Wall clock time and date at job start Tue Mar 31 2020 04:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46782 * 2 1 4 4 C 1.46493 * 120.00065 * 84.99540 * 3 2 1 5 5 C 1.50706 * 109.47128 * 85.00121 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31514 * 120.00481 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47209 * 90.00365 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00213 * 9 7 5 12 12 H 1.48501 * 109.47275 * 330.00116 * 9 7 5 13 13 S 1.65596 * 119.99652 * 264.99912 * 3 2 1 14 14 O 1.42099 * 106.40339 * 23.53868 * 13 3 2 15 15 O 1.42105 * 106.40306 * 156.45830 * 13 3 2 16 16 N 1.65598 * 107.21978 * 269.99930 * 13 3 2 17 17 C 1.46931 * 120.62962 * 269.72660 * 16 13 3 18 18 C 1.52764 * 109.00405 * 233.58097 * 17 16 13 19 19 C 1.53036 * 109.38228 * 305.58538 * 18 17 16 20 20 C 1.53042 * 109.53887 * 61.24287 * 19 18 17 21 21 H 1.08998 * 109.49639 * 58.58790 * 20 19 18 22 22 C 1.53000 * 109.52318 * 178.66577 * 20 19 18 23 23 H 1.08998 * 109.47258 * 59.85795 * 22 20 19 24 24 C 1.52996 * 109.47399 * 299.85387 * 22 20 19 25 25 O 1.42907 * 109.46891 * 179.85255 * 22 20 19 26 26 C 1.46927 * 120.63004 * 89.99831 * 16 13 3 27 27 H 1.08997 * 109.47571 * 300.00113 * 1 2 3 28 28 H 1.08996 * 109.47402 * 60.00415 * 1 2 3 29 29 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47088 * 240.00102 * 2 1 3 31 31 H 1.09005 * 109.46896 * 119.99308 * 2 1 3 32 32 H 1.09001 * 109.47786 * 325.00394 * 4 3 2 33 33 H 1.08998 * 109.47558 * 205.00257 * 4 3 2 34 34 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.58588 * 353.41214 * 17 16 13 36 36 H 1.08994 * 109.58565 * 113.84073 * 17 16 13 37 37 H 1.09000 * 109.55981 * 185.55120 * 18 17 16 38 38 H 1.08992 * 109.38635 * 65.51522 * 18 17 16 39 39 H 1.08999 * 109.46324 * 301.22196 * 19 18 17 40 40 H 1.09004 * 109.45885 * 181.26175 * 19 18 17 41 41 H 1.09002 * 109.46869 * 60.00156 * 24 22 20 42 42 H 1.09003 * 109.47556 * 180.02562 * 24 22 20 43 43 H 1.09007 * 109.47000 * 300.00277 * 24 22 20 44 44 H 0.96699 * 113.99772 * 60.00711 * 25 22 20 45 45 H 1.09001 * 109.58676 * 246.15583 * 26 16 13 46 46 H 1.08994 * 109.58873 * 6.58609 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1088 1.2638 5 6 3.4946 1.7890 1.8824 6 1 4.1719 1.1113 1.3840 7 6 3.8549 2.3656 3.0818 8 7 5.0215 2.0870 3.6213 9 14 2.6866 3.5438 3.9399 10 1 1.8005 2.7823 4.8566 11 1 3.4688 4.5369 4.7191 12 1 1.8615 4.2488 2.9262 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4448 15 8 2.3055 3.5187 -1.1999 16 7 4.0143 1.8138 -1.7138 17 6 5.0513 2.7292 -1.2181 18 6 5.9477 3.1434 -2.3837 19 6 6.4922 1.8916 -3.0753 20 6 5.3288 1.0653 -3.6285 21 1 4.7536 1.6705 -4.3291 22 6 5.8752 -0.1690 -4.3487 23 1 6.4513 -0.7733 -3.6480 24 6 6.7771 0.2718 -5.5033 25 8 4.7878 -0.9414 -4.8618 26 6 4.4257 0.6246 -2.4722 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.3616 1.8098 1.9453 33 1 2.0919 3.1804 1.0756 34 1 5.2750 2.4929 4.4650 35 1 4.5822 3.6137 -0.7874 36 1 5.6513 2.2256 -0.4603 37 1 6.7778 3.7431 -2.0104 38 1 5.3671 3.7293 -3.0961 39 1 7.0524 1.2939 -2.3562 40 1 7.1499 2.1857 -3.8934 41 1 7.6065 0.8610 -5.1120 42 1 7.1660 -0.6075 -6.0168 43 1 6.2010 0.8761 -6.2041 44 1 4.2310 -0.4657 -5.4933 45 1 4.9738 -0.0541 -1.8187 46 1 3.5441 0.1211 -2.8687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554519087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:23 Heat of formation + Delta-G solvation = -139.329211 kcal Electronic energy + Delta-G solvation = -27674.008632 eV Core-core repulsion = 23917.920611 eV Total energy + Delta-G solvation = -3756.088021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.21925 -36.82733 -36.64021 -36.13605 -35.27075 -32.87222 -32.63338 -31.30143 -30.22206 -29.25575 -27.12912 -24.56266 -23.58588 -22.89130 -21.66330 -21.43363 -20.24545 -18.27531 -17.37669 -16.91231 -16.81210 -16.40232 -15.86600 -15.47086 -14.80459 -14.57514 -14.31541 -14.16759 -13.88435 -13.66011 -13.34864 -13.22062 -12.85400 -12.70234 -12.45416 -12.39486 -12.14490 -12.07110 -11.87664 -11.76273 -11.57526 -11.45954 -11.33898 -11.13518 -10.98354 -10.89141 -10.73407 -10.63948 -10.58665 -10.37280 -10.20257 -10.12943 -9.84314 -9.59250 -8.66541 -8.59423 -8.08662 -6.16463 -4.16399 1.21265 3.24188 3.32062 3.38159 3.42912 4.02856 4.25481 4.34955 4.55222 4.75327 4.81775 4.99241 5.07730 5.11628 5.16971 5.26844 5.36587 5.43820 5.47869 5.57938 5.62444 5.67632 5.72285 5.76239 5.85566 5.91058 5.99448 6.03799 6.08022 6.10975 6.22052 6.26004 6.30043 6.50103 6.57743 6.58814 6.61294 6.84624 6.96348 7.15485 7.44517 7.55495 7.56189 8.41365 8.87751 9.44863 10.95829 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015037 B = 0.005159 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.580053 B = 5426.054168 C = 6291.401559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.987 5.987 4 C 0.214 3.786 5 C -0.538 4.538 6 H 0.081 0.919 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.865 3.135 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.261 1.261 13 S 2.786 3.214 14 O -0.995 6.995 15 O -0.982 6.982 16 N -1.001 6.001 17 C 0.125 3.875 18 C -0.131 4.131 19 C -0.111 4.111 20 C -0.130 4.130 21 H 0.075 0.925 22 C 0.107 3.893 23 H 0.100 0.900 24 C -0.185 4.185 25 O -0.562 6.562 26 C 0.131 3.869 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.046 0.954 34 H 0.265 0.735 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.375 0.625 45 H 0.066 0.934 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 -2.892 -14.221 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.827 5.827 4 C 0.090 3.910 5 C -0.577 4.577 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.692 3.308 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.185 1.185 13 S 2.796 3.204 14 O -0.979 6.979 15 O -0.966 6.966 16 N -0.839 5.839 17 C 0.000 4.000 18 C -0.170 4.170 19 C -0.149 4.149 20 C -0.151 4.151 21 H 0.093 0.907 22 C 0.048 3.952 23 H 0.118 0.882 24 C -0.243 4.243 25 O -0.368 6.368 26 C 0.005 3.995 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.222 0.778 45 H 0.085 0.915 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.274 -2.783 -14.184 14.510 hybrid contribution -0.341 0.867 0.636 1.128 sum 0.933 -1.917 -13.547 13.714 Atomic orbital electron populations 1.22216 0.96943 1.01575 1.02201 1.21012 0.93513 0.82664 1.02557 1.57580 1.78736 1.22976 1.23434 1.19577 0.97971 0.92302 0.81128 1.21446 1.00941 1.28837 1.06454 0.90073 1.24831 0.94955 0.96000 0.96838 1.69885 1.20546 1.43804 1.18969 0.87001 0.81649 0.81720 0.80420 1.20048 1.20950 1.18511 1.01687 0.72646 0.73249 0.72790 1.93527 1.70633 1.76399 1.57354 1.93546 1.85945 1.31046 1.86086 1.58050 1.24810 1.33592 1.67450 1.21286 0.89986 0.93422 0.95346 1.21813 0.99560 0.97299 0.98351 1.21545 0.96684 0.96727 0.99947 1.22224 0.97797 0.97087 0.97984 0.90703 1.21928 0.87271 0.91695 0.94348 0.88180 1.22544 1.00827 1.01912 0.98996 1.86588 1.42946 1.43012 1.64209 1.21273 0.99609 0.86684 0.91894 0.92333 0.92608 0.92112 0.91638 0.89971 0.95112 0.93661 0.92549 0.88888 0.90459 0.90771 0.92040 0.91365 0.91750 0.91164 0.91998 0.92425 0.77820 0.91537 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.13 2.23 6.06 -4.04 -0.02 2.20 16 3 N -0.99 -19.98 2.82 -115.66 -0.33 -20.31 16 4 C 0.21 4.96 4.50 -5.19 -0.02 4.93 16 5 C -0.54 -13.99 9.94 -34.44 -0.34 -14.33 16 6 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 7 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -25.68 13.96 55.43 0.77 -24.90 16 9 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 10 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.26 -6.09 6.53 56.52 0.37 -5.72 16 13 S 2.79 55.13 6.10 -107.50 -0.66 54.47 16 14 O -1.00 -19.85 15.70 -57.17 -0.90 -20.75 16 15 O -0.98 -22.17 15.27 -57.17 -0.87 -23.04 16 16 N -1.00 -17.09 3.35 -113.77 -0.38 -17.47 16 17 C 0.12 2.10 6.45 -3.93 -0.03 2.08 16 18 C -0.13 -1.70 6.06 -26.83 -0.16 -1.87 16 19 C -0.11 -1.23 4.86 -26.69 -0.13 -1.36 16 20 C -0.13 -1.51 2.11 -90.50 -0.19 -1.70 16 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 22 C 0.11 1.07 3.17 -26.73 -0.08 0.99 16 23 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 24 C -0.19 -1.49 9.19 37.16 0.34 -1.15 16 25 O -0.56 -6.19 12.78 -35.23 -0.45 -6.64 16 26 C 0.13 1.90 5.53 -3.71 -0.02 1.88 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.07 1.03 7.61 -51.93 -0.40 0.64 16 31 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 32 H 0.03 0.69 7.55 -51.93 -0.39 0.30 16 33 H 0.05 1.11 5.95 -51.93 -0.31 0.80 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.09 1.74 6.91 -51.93 -0.36 1.38 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.59 6.37 -51.93 -0.33 0.26 16 41 H 0.07 0.52 6.41 -51.93 -0.33 0.19 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.37 3.02 9.05 45.56 0.41 3.43 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.09 1.36 6.64 -51.93 -0.34 1.01 16 LS Contribution 370.44 15.07 5.58 5.58 Total: -1.00 -31.58 370.44 -9.41 -40.99 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.14 Total: 4.72 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.38 Total: -8.56 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.07 Total: -62.68 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -2.22 Total: -50.43 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 16 Polarization: 55.13 SS G_CDS: -0.66 Total: 54.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.58 -9.41 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554519087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.337 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds