Wall clock time and date at job start Tue Mar 31 2020 05:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35288 * 117.00179 * 2 1 4 4 N 1.32475 * 119.02034 * 179.97438 * 3 2 1 5 5 C 1.32003 * 120.91512 * 179.97438 * 4 3 2 6 6 C 1.40061 * 118.99353 * 0.02562 * 5 4 3 7 7 C 1.47618 * 120.88744 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00445 * 39.45909 * 7 6 5 9 9 N 1.34778 * 119.99921 * 219.46656 * 7 6 5 10 10 C 1.46921 * 120.62895 * 5.90830 * 9 7 6 11 11 C 1.53632 * 108.54505 * 126.36995 * 10 9 7 12 12 C 1.53044 * 109.24221 * 54.85131 * 11 10 9 13 13 C 1.53036 * 109.53719 * 298.51695 * 12 11 10 14 14 H 1.08999 * 109.49933 * 301.40627 * 13 12 11 15 15 N 1.46505 * 109.49460 * 181.31377 * 13 12 11 16 16 C 1.46502 * 120.00027 * 300.16299 * 15 13 12 17 17 C 1.36937 * 119.99923 * 120.16156 * 15 13 12 18 18 H 1.08002 * 120.00228 * 324.70111 * 17 15 13 19 19 C 1.38809 * 119.99941 * 144.70552 * 17 15 13 20 20 N 1.31620 * 120.00003 * 156.77701 * 19 17 15 21 21 Si 1.86800 * 120.00041 * 336.78363 * 19 17 15 22 22 H 1.48503 * 109.47250 * 95.35394 * 21 19 17 23 23 H 1.48509 * 109.46900 * 215.35058 * 21 19 17 24 24 H 1.48495 * 109.47144 * 335.34887 * 21 19 17 25 25 C 1.46927 * 120.63154 * 186.18470 * 9 7 6 26 26 C 1.40059 * 118.22715 * 0.26471 * 6 5 4 27 27 N 1.32016 * 118.98918 * 359.42840 * 26 6 5 28 28 H 1.09007 * 109.46460 * 60.00036 * 1 2 3 29 29 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46881 * 300.00576 * 1 2 3 31 31 H 1.08003 * 120.50511 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.58888 * 246.19886 * 10 9 7 33 33 H 1.08994 * 109.59058 * 6.62891 * 10 9 7 34 34 H 1.09002 * 109.63207 * 294.86555 * 11 10 9 35 35 H 1.08995 * 109.43603 * 174.72506 * 11 10 9 36 36 H 1.08995 * 109.45906 * 178.49355 * 12 11 10 37 37 H 1.09000 * 109.44295 * 58.52530 * 12 11 10 38 38 H 1.08997 * 109.47375 * 86.19906 * 16 15 13 39 39 H 1.09004 * 109.47097 * 206.20396 * 16 15 13 40 40 H 1.09000 * 109.46900 * 326.19605 * 16 15 13 41 41 H 0.97004 * 120.00528 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.58638 * 353.37711 * 25 9 7 43 43 H 1.09000 * 109.58464 * 113.80024 * 25 9 7 44 44 H 1.08001 * 120.50282 * 179.70884 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2054 0.0000 4 7 3.3672 1.2521 0.0005 5 6 4.0051 2.4077 0.0000 6 6 3.2606 3.5941 -0.0005 7 6 3.9308 4.9094 -0.0016 8 8 4.9309 5.0815 -0.6712 9 7 3.4342 5.9194 0.7398 10 6 2.3053 5.6932 1.6525 11 6 2.7029 6.1848 3.0527 12 6 3.1572 7.6436 2.9649 13 6 4.3824 7.7441 2.0534 14 1 5.1819 7.1172 2.4482 15 7 4.8355 9.1361 1.9950 16 6 3.9349 10.1793 1.4979 17 6 6.1007 9.4622 2.4049 18 1 6.5508 8.9390 3.2357 19 6 6.8047 10.4652 1.7529 20 7 7.7789 11.0958 2.3738 21 14 6.3692 10.9202 -0.0057 22 1 5.4370 12.0762 -0.0017 23 1 7.6056 11.2840 -0.7436 24 1 5.7189 9.7622 -0.6701 25 6 4.0075 7.2690 0.6462 26 6 1.8632 3.4993 0.0052 27 7 1.3030 2.3039 -0.0007 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.0847 2.4381 0.0009 32 1 1.4348 6.2472 1.3013 33 1 2.0731 4.6289 1.6898 34 1 3.5182 5.5725 3.4380 35 1 1.8446 6.1106 3.7204 36 1 3.4148 8.0043 3.9606 37 1 2.3498 8.2511 2.5561 38 1 3.3150 10.5446 2.3166 39 1 4.5221 11.0028 1.0913 40 1 3.2977 9.7667 0.7157 41 1 8.2712 11.7965 1.9181 42 1 4.8987 7.2447 0.0191 43 1 3.2729 7.9488 0.2146 44 1 1.2533 4.3906 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027638708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:23 Heat of formation + Delta-G solvation = 29.316447 kcal Electronic energy + Delta-G solvation = -27423.219851 eV Core-core repulsion = 23571.293655 eV Total energy + Delta-G solvation = -3851.926196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80323 -40.07607 -38.62217 -37.57041 -35.46304 -34.32006 -32.72110 -31.87348 -31.56732 -29.46941 -28.06480 -26.24609 -25.89091 -25.03674 -24.24494 -23.55719 -21.77734 -20.31262 -19.31190 -19.00252 -18.54655 -17.27539 -16.89632 -16.82755 -16.05239 -15.65944 -15.40069 -15.21451 -14.87542 -14.39843 -14.24462 -14.11755 -13.97498 -13.82452 -13.44917 -12.84318 -12.78634 -12.51775 -12.44274 -12.30492 -12.26615 -12.07493 -11.82975 -11.47661 -11.27457 -11.13658 -10.70306 -10.59042 -10.46192 -10.12871 -9.99458 -9.95818 -9.66893 -9.62167 -9.36729 -8.59244 -8.52757 -6.91541 -6.02872 -3.42941 0.27174 0.60333 2.11742 2.59663 2.90260 3.29399 3.37066 3.47742 3.51243 3.51643 4.05912 4.24287 4.30961 4.49559 4.60123 4.66713 4.78577 4.83112 4.94327 5.03736 5.10254 5.13086 5.25271 5.27853 5.34368 5.54123 5.62616 5.66508 5.73998 5.94354 6.01984 6.15872 6.19908 6.24947 6.31331 6.42238 6.51125 6.62787 6.66216 6.78487 6.80951 7.37229 7.58334 7.98479 8.09189 8.32396 8.92367 9.66482 10.03893 11.12554 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.003059 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.637722 B = 9149.651749 C = 9587.546878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.286 6.286 3 C 0.510 3.490 4 N -0.524 5.524 5 C 0.244 3.756 6 C -0.271 4.271 7 C 0.569 3.431 8 O -0.526 6.526 9 N -0.599 5.599 10 C 0.099 3.901 11 C -0.131 4.131 12 C -0.132 4.132 13 C 0.167 3.833 14 H 0.076 0.924 15 N -0.601 5.601 16 C 0.109 3.891 17 C -0.271 4.271 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.898 5.898 21 Si 0.881 3.119 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.268 1.268 25 C 0.093 3.907 26 C 0.219 3.781 27 N -0.569 5.569 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.189 0.811 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.018 0.982 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.105 -17.536 -2.694 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.186 6.186 3 C 0.209 3.791 4 N -0.248 5.248 5 C 0.077 3.923 6 C -0.280 4.280 7 C 0.354 3.646 8 O -0.402 6.402 9 N -0.332 5.332 10 C -0.024 4.024 11 C -0.169 4.169 12 C -0.171 4.171 13 C 0.058 3.942 14 H 0.094 0.906 15 N -0.324 5.324 16 C -0.036 4.036 17 C -0.399 4.399 18 H 0.099 0.901 19 C -0.166 4.166 20 N -0.538 5.538 21 Si 0.712 3.288 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.193 1.193 25 C -0.030 4.030 26 C 0.053 3.947 27 N -0.299 5.299 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.205 0.795 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -17.847 -18.540 -3.055 25.915 hybrid contribution -0.099 1.348 -1.007 1.685 sum -17.947 -17.193 -4.062 25.183 Atomic orbital electron populations 1.23069 0.75279 1.03827 1.03129 1.86078 1.23706 1.22595 1.86253 1.20955 0.86351 0.84861 0.86914 1.67718 1.07269 1.29874 1.19972 1.23338 1.01112 0.84144 0.83722 1.21643 0.96378 0.97025 1.12951 1.17685 0.83867 0.82843 0.80161 1.90846 1.24397 1.82374 1.42626 1.48145 1.33941 1.10156 1.40949 1.22157 0.88902 1.00872 0.90519 1.21979 1.01554 0.98146 0.95260 1.22048 0.99120 0.94260 1.01671 1.20778 0.94950 0.87062 0.91386 0.90587 1.44089 1.12337 1.00086 1.75841 1.21346 0.93559 0.92394 0.96288 1.18791 0.90201 1.19535 1.11357 0.90145 1.25444 0.95699 0.97804 0.97636 1.69871 1.24337 1.23313 1.36318 0.86904 0.76372 0.78161 0.87403 1.21544 1.22952 1.19327 1.22603 0.99430 0.79507 1.01484 1.23348 0.91373 0.94695 0.85294 1.68103 1.40909 0.98953 1.21909 0.91644 0.87647 0.91581 0.79460 0.90869 0.90387 0.91414 0.90977 0.91197 0.92334 0.96423 0.93391 0.95313 0.92619 0.88623 0.91786 0.80274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.35 101.05 1.05 1.30 16 2 O -0.29 -2.97 10.55 -17.56 -0.19 -3.16 16 3 C 0.51 5.92 8.48 -90.99 -0.77 5.15 16 4 N -0.52 -6.51 10.45 -14.39 -0.15 -6.66 16 5 C 0.24 2.81 10.96 -16.79 -0.18 2.62 16 6 C -0.27 -3.13 5.17 -104.70 -0.54 -3.67 16 7 C 0.57 8.24 7.36 -12.43 -0.09 8.15 16 8 O -0.53 -9.78 16.37 5.29 0.09 -9.69 16 9 N -0.60 -8.16 2.97 -173.70 -0.52 -8.67 16 10 C 0.10 0.97 4.93 -3.48 -0.02 0.95 16 11 C -0.13 -1.42 6.10 -26.38 -0.16 -1.58 16 12 C -0.13 -1.90 5.14 -26.69 -0.14 -2.04 16 13 C 0.17 3.07 2.75 -67.81 -0.19 2.89 16 14 H 0.08 1.54 7.89 -51.93 -0.41 1.13 16 15 N -0.60 -13.62 2.41 -173.35 -0.42 -14.04 16 16 C 0.11 2.25 8.51 59.85 0.51 2.76 16 17 C -0.27 -7.40 9.85 -15.06 -0.15 -7.55 16 18 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 19 C 0.04 1.00 5.28 -17.43 -0.09 0.91 16 20 N -0.90 -27.20 13.97 55.49 0.78 -26.43 16 21 Si 0.88 22.16 25.00 -169.99 -4.25 17.91 16 22 H -0.29 -6.96 6.65 56.52 0.38 -6.58 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.09 1.58 5.79 -3.71 -0.02 1.56 16 26 C 0.22 2.10 8.68 -16.79 -0.15 1.95 16 27 N -0.57 -5.86 9.19 -14.39 -0.13 -5.99 16 28 H 0.06 0.38 8.09 -51.92 -0.42 -0.04 16 29 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.19 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.08 0.65 4.70 -51.93 -0.24 0.41 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.81 7.71 -51.93 -0.40 0.41 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 1.10 3.22 -51.93 -0.17 0.93 16 40 H 0.03 0.51 6.35 -51.93 -0.33 0.18 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.10 1.96 7.00 -51.93 -0.36 1.60 16 43 H 0.06 1.04 6.49 -51.93 -0.34 0.70 16 44 H 0.18 1.27 6.57 -52.49 -0.34 0.92 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -33.65 350.45 -6.43 -40.08 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.98 Total: -2.04 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -0.94 Total: 13.40 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.44 Total: -61.79 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.10 Total: -12.85 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.25 Total: 17.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.65 -6.43 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027638708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.396 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds