Wall clock time and date at job start Tue Mar 31 2020 05:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35288 * 117.00179 * 2 1 4 4 N 1.32475 * 119.02034 * 179.97438 * 3 2 1 5 5 C 1.32003 * 120.91512 * 179.97438 * 4 3 2 6 6 C 1.40061 * 118.99353 * 0.02562 * 5 4 3 7 7 C 1.47618 * 120.88744 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00445 * 39.45909 * 7 6 5 9 9 N 1.34778 * 119.99921 * 219.46656 * 7 6 5 10 10 C 1.46921 * 120.62895 * 5.90830 * 9 7 6 11 11 C 1.53632 * 108.54505 * 126.36995 * 10 9 7 12 12 C 1.53044 * 109.24221 * 54.85131 * 11 10 9 13 13 C 1.53036 * 109.53719 * 298.51695 * 12 11 10 14 14 H 1.08999 * 109.49933 * 301.40627 * 13 12 11 15 15 N 1.46505 * 109.49460 * 181.31377 * 13 12 11 16 16 C 1.46502 * 120.00027 * 300.16299 * 15 13 12 17 17 C 1.36937 * 119.99923 * 120.16156 * 15 13 12 18 18 H 1.08002 * 120.00228 * 324.70111 * 17 15 13 19 19 C 1.38809 * 119.99941 * 144.70552 * 17 15 13 20 20 N 1.31620 * 120.00003 * 156.77701 * 19 17 15 21 21 Si 1.86800 * 120.00041 * 336.78363 * 19 17 15 22 22 H 1.48503 * 109.47250 * 95.35394 * 21 19 17 23 23 H 1.48509 * 109.46900 * 215.35058 * 21 19 17 24 24 H 1.48495 * 109.47144 * 335.34887 * 21 19 17 25 25 C 1.46927 * 120.63154 * 186.18470 * 9 7 6 26 26 C 1.40059 * 118.22715 * 0.26471 * 6 5 4 27 27 N 1.32016 * 118.98918 * 359.42840 * 26 6 5 28 28 H 1.09007 * 109.46460 * 60.00036 * 1 2 3 29 29 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46881 * 300.00576 * 1 2 3 31 31 H 1.08003 * 120.50511 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.58888 * 246.19886 * 10 9 7 33 33 H 1.08994 * 109.59058 * 6.62891 * 10 9 7 34 34 H 1.09002 * 109.63207 * 294.86555 * 11 10 9 35 35 H 1.08995 * 109.43603 * 174.72506 * 11 10 9 36 36 H 1.08995 * 109.45906 * 178.49355 * 12 11 10 37 37 H 1.09000 * 109.44295 * 58.52530 * 12 11 10 38 38 H 1.08997 * 109.47375 * 86.19906 * 16 15 13 39 39 H 1.09004 * 109.47097 * 206.20396 * 16 15 13 40 40 H 1.09000 * 109.46900 * 326.19605 * 16 15 13 41 41 H 0.97004 * 120.00528 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.58638 * 353.37711 * 25 9 7 43 43 H 1.09000 * 109.58464 * 113.80024 * 25 9 7 44 44 H 1.08001 * 120.50282 * 179.70884 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2054 0.0000 4 7 3.3672 1.2521 0.0005 5 6 4.0051 2.4077 0.0000 6 6 3.2606 3.5941 -0.0005 7 6 3.9308 4.9094 -0.0016 8 8 4.9309 5.0815 -0.6712 9 7 3.4342 5.9194 0.7398 10 6 2.3053 5.6932 1.6525 11 6 2.7029 6.1848 3.0527 12 6 3.1572 7.6436 2.9649 13 6 4.3824 7.7441 2.0534 14 1 5.1819 7.1172 2.4482 15 7 4.8355 9.1361 1.9950 16 6 3.9349 10.1793 1.4979 17 6 6.1007 9.4622 2.4049 18 1 6.5508 8.9390 3.2357 19 6 6.8047 10.4652 1.7529 20 7 7.7789 11.0958 2.3738 21 14 6.3692 10.9202 -0.0057 22 1 5.4370 12.0762 -0.0017 23 1 7.6056 11.2840 -0.7436 24 1 5.7189 9.7622 -0.6701 25 6 4.0075 7.2690 0.6462 26 6 1.8632 3.4993 0.0052 27 7 1.3030 2.3039 -0.0007 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.0847 2.4381 0.0009 32 1 1.4348 6.2472 1.3013 33 1 2.0731 4.6289 1.6898 34 1 3.5182 5.5725 3.4380 35 1 1.8446 6.1106 3.7204 36 1 3.4148 8.0043 3.9606 37 1 2.3498 8.2511 2.5561 38 1 3.3150 10.5446 2.3166 39 1 4.5221 11.0028 1.0913 40 1 3.2977 9.7667 0.7157 41 1 8.2712 11.7965 1.9181 42 1 4.8987 7.2447 0.0191 43 1 3.2729 7.9488 0.2146 44 1 1.2533 4.3906 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027638708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:22 Heat of formation + Delta-G solvation = 2.380550 kcal Electronic energy + Delta-G solvation = -27424.387879 eV Core-core repulsion = 23571.293655 eV Total energy + Delta-G solvation = -3853.094225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.66267 -41.15665 -39.47826 -38.85904 -36.95917 -35.20996 -34.20489 -33.20230 -32.84555 -30.82330 -28.68539 -28.05448 -26.91181 -25.97742 -25.47004 -24.77428 -23.02810 -21.61029 -20.29942 -19.99036 -19.41745 -18.93253 -18.26469 -17.60103 -17.41206 -17.14348 -16.46823 -16.36971 -15.73908 -15.52396 -15.40481 -15.29026 -14.95683 -14.89974 -14.70350 -14.38146 -14.16253 -14.04270 -13.93666 -13.70028 -13.14046 -13.03098 -12.91172 -12.54758 -12.43488 -12.25447 -12.18585 -12.04241 -11.84833 -11.73908 -11.62992 -11.45474 -11.09759 -10.61731 -10.50192 -10.23978 -9.76495 -8.77816 -8.22624 -5.58044 -0.59963 -0.20366 1.27633 1.39958 1.42337 1.51567 1.51704 1.82362 2.39513 2.49597 2.75595 3.04230 3.21550 3.34315 3.36162 3.50934 3.78156 3.95247 3.99379 4.05095 4.17020 4.32182 4.36570 4.41095 4.52268 4.54774 4.57429 4.66876 4.69521 4.78043 4.84217 4.85102 4.89523 4.99214 5.04195 5.15789 5.40320 5.41306 5.44703 5.50517 5.87768 5.90360 6.13668 6.28910 6.76579 6.94001 6.99143 7.61014 7.99775 8.97465 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.003059 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.637722 B = 9149.651749 C = 9587.546878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.300 6.300 3 C 0.505 3.495 4 N -0.547 5.547 5 C 0.242 3.758 6 C -0.278 4.278 7 C 0.571 3.429 8 O -0.577 6.577 9 N -0.595 5.595 10 C 0.096 3.904 11 C -0.124 4.124 12 C -0.121 4.121 13 C 0.164 3.836 14 H 0.042 0.958 15 N -0.615 5.615 16 C 0.106 3.894 17 C -0.258 4.258 18 H 0.040 0.960 19 C -0.024 4.024 20 N -0.948 5.948 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.314 1.314 24 H -0.261 1.261 25 C 0.106 3.894 26 C 0.236 3.764 27 N -0.562 5.562 28 H 0.068 0.932 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.190 0.810 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.026 0.974 40 H 0.064 0.936 41 H 0.263 0.737 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.673 -18.614 -3.439 29.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.205 3.795 4 N -0.272 5.272 5 C 0.075 3.925 6 C -0.287 4.287 7 C 0.359 3.641 8 O -0.457 6.457 9 N -0.327 5.327 10 C -0.025 4.025 11 C -0.163 4.163 12 C -0.160 4.160 13 C 0.057 3.943 14 H 0.060 0.940 15 N -0.339 5.339 16 C -0.038 4.038 17 C -0.388 4.388 18 H 0.058 0.942 19 C -0.220 4.220 20 N -0.593 5.593 21 Si 0.776 3.224 22 H -0.194 1.194 23 H -0.243 1.243 24 H -0.185 1.185 25 C -0.018 4.018 26 C 0.070 3.930 27 N -0.292 5.292 28 H 0.087 0.913 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.207 0.793 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -22.508 -19.668 -3.781 30.128 hybrid contribution 1.255 1.536 -0.657 2.090 sum -21.253 -18.132 -4.438 28.287 Atomic orbital electron populations 1.23394 0.73062 1.05822 1.03577 1.86085 1.25919 1.22275 1.85784 1.21203 0.86332 0.85671 0.86338 1.67723 1.08183 1.30153 1.21183 1.23413 1.01483 0.84232 0.83329 1.21326 0.97290 0.95065 1.14990 1.18032 0.83123 0.83681 0.79282 1.90826 1.26793 1.83256 1.44850 1.48129 1.34615 1.08602 1.41358 1.22517 0.88298 1.02883 0.88827 1.21963 1.02478 0.94992 0.96849 1.21899 0.97335 0.97360 0.99444 1.20864 0.95841 0.84304 0.93300 0.93966 1.44175 1.11062 1.02495 1.76208 1.21426 0.93262 0.91315 0.97753 1.18669 0.92085 1.18235 1.09823 0.94232 1.26072 0.96180 0.98511 1.01266 1.69998 1.26549 1.24845 1.37876 0.85837 0.75866 0.78651 0.82065 1.19394 1.24297 1.18548 1.22124 0.98636 0.81838 0.99227 1.23818 0.90520 0.95514 0.83193 1.68242 1.40191 0.98743 1.21975 0.91281 0.85031 0.90913 0.79280 0.87141 0.88241 0.92823 0.87287 0.92974 0.90341 0.94786 0.95586 0.91781 0.92795 0.92766 0.89833 0.76924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.35 113.37 1.17 1.51 16 2 O -0.30 -5.61 10.55 -85.73 -0.90 -6.52 16 3 C 0.51 10.66 8.48 180.48 1.53 12.19 16 4 N -0.55 -13.02 10.45 -312.42 -3.26 -16.29 16 5 C 0.24 5.40 10.96 85.11 0.93 6.34 16 6 C -0.28 -5.87 5.17 -19.92 -0.10 -5.98 16 7 C 0.57 15.93 7.36 86.72 0.64 16.57 16 8 O -0.58 -21.90 16.37 -3.98 -0.07 -21.97 16 9 N -0.60 -14.82 2.97 -821.73 -2.44 -17.26 16 10 C 0.10 1.42 4.93 86.51 0.43 1.85 16 11 C -0.12 -2.23 6.10 30.82 0.19 -2.04 16 12 C -0.12 -3.20 5.14 30.62 0.16 -3.04 16 13 C 0.16 5.99 2.75 45.07 0.12 6.11 16 14 H 0.04 1.79 7.89 -2.39 -0.02 1.77 16 15 N -0.62 -27.86 2.41 -702.35 -1.69 -29.56 16 16 C 0.11 4.15 8.51 127.77 1.09 5.24 16 17 C -0.26 -14.69 9.85 84.03 0.83 -13.87 16 18 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 19 C -0.02 -1.41 5.28 84.86 0.45 -0.96 16 20 N -0.95 -59.94 13.97 21.65 0.30 -59.64 16 21 Si 0.95 46.75 25.00 68.60 1.72 48.46 16 22 H -0.27 -12.21 6.65 99.48 0.66 -11.55 16 23 H -0.31 -15.99 7.11 99.48 0.71 -15.28 16 24 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 25 C 0.11 3.47 5.79 86.36 0.50 3.97 16 26 C 0.24 3.61 8.68 85.11 0.74 4.35 16 27 N -0.56 -9.66 9.19 -312.42 -2.87 -12.53 16 28 H 0.07 0.60 8.09 -2.38 -0.02 0.58 16 29 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.59 8.09 -2.38 -0.02 0.57 16 31 H 0.19 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.11 0.98 8.12 -2.39 -0.02 0.96 16 33 H 0.10 1.14 4.70 -2.39 -0.01 1.12 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.79 7.71 -2.39 -0.02 1.78 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.03 1.14 3.22 -2.38 -0.01 1.13 16 40 H 0.06 2.04 6.35 -2.39 -0.02 2.02 16 41 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.05 2.25 7.00 -2.39 -0.02 2.23 16 43 H 0.08 2.42 6.49 -2.39 -0.02 2.40 16 44 H 0.21 1.75 6.57 -2.91 -0.02 1.73 16 Total: -1.00 -78.72 350.45 0.43 -78.29 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 0.98 Total: 4.76 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 8.67 Total: 32.24 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -9.96 Total: -135.27 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.97 Total: -28.48 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.72 Total: 48.46 kcal Total: -78.72 0.43 -78.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027638708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.671 kcal (2) G-P(sol) polarization free energy of solvation -78.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds