Wall clock time and date at job start Tue Mar 31 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99858 * 2 1 4 4 O 1.21576 * 119.99871 * 175.92837 * 3 2 1 5 5 C 1.47711 * 120.00172 * 355.91859 * 3 2 1 6 6 N 1.31835 * 126.57126 * 5.93399 * 5 3 2 7 7 N 1.28463 * 110.06137 * 179.97438 * 6 5 3 8 8 H 0.97001 * 124.88526 * 179.97438 * 7 6 5 9 9 C 1.35255 * 110.22894 * 359.97438 * 7 6 5 10 10 C 1.35050 * 107.07632 * 359.79043 * 9 7 6 11 11 C 1.50950 * 110.52500 * 179.71742 * 10 9 7 12 12 C 1.54504 * 105.02647 * 343.60758 * 11 10 9 13 13 C 1.51237 * 142.77001 * 180.02562 * 9 7 6 14 14 C 1.46498 * 119.99827 * 179.97438 * 2 1 3 15 15 H 1.09005 * 110.88752 * 183.88099 * 14 2 1 16 16 C 1.54904 * 111.01058 * 307.81392 * 14 2 1 17 17 N 1.47745 * 104.84447 * 155.16620 * 16 14 2 18 18 C 1.36937 * 125.82003 * 155.82882 * 17 16 14 19 19 H 1.07997 * 120.00496 * 359.93014 * 18 17 16 20 20 C 1.38811 * 119.99812 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99950 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99895 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47368 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46723 * 120.00122 * 22 20 18 25 25 H 1.48507 * 109.47022 * 239.99834 * 22 20 18 26 26 C 1.47016 * 108.52776 * 335.74747 * 17 16 14 27 27 C 1.54318 * 107.40510 * 1.18268 * 26 17 16 28 28 H 1.09000 * 110.71986 * 263.75257 * 27 26 17 29 29 O 1.42904 * 110.72242 * 140.65569 * 27 26 17 30 30 H 1.09001 * 109.47265 * 275.72151 * 1 2 3 31 31 H 1.09000 * 109.46853 * 35.72608 * 1 2 3 32 32 H 1.09004 * 109.46839 * 155.72074 * 1 2 3 33 33 H 1.08998 * 110.48275 * 224.62667 * 11 10 9 34 34 H 1.09000 * 110.22688 * 102.46139 * 11 10 9 35 35 H 1.09002 * 110.93342 * 267.10738 * 12 11 10 36 36 H 1.09005 * 110.93164 * 143.44701 * 12 11 10 37 37 H 1.09001 * 110.32682 * 315.74563 * 13 9 7 38 38 H 1.08998 * 110.32433 * 77.85984 * 13 9 7 39 39 H 1.09008 * 110.36335 * 273.91845 * 16 14 2 40 40 H 1.08997 * 110.37047 * 36.12518 * 16 14 2 41 41 H 0.97000 * 119.99597 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.88200 * 241.68750 * 26 17 16 43 43 H 1.08999 * 109.88049 * 120.67833 * 26 17 16 44 44 H 0.96694 * 113.99711 * 61.45387 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3523 1.1685 0.0748 5 6 1.4031 2.4448 -0.0910 6 7 0.0943 2.6008 -0.0678 7 7 -0.2028 3.8466 -0.1679 8 1 -1.1049 4.2031 -0.1738 9 6 0.9232 4.5897 -0.2637 10 6 1.9678 3.7351 -0.2136 11 6 3.2723 4.4869 -0.3219 12 6 2.8873 5.8812 -0.8648 13 6 1.4196 6.0117 -0.4007 14 6 2.1975 -1.2687 0.0006 15 1 3.2718 -1.0973 0.0694 16 6 1.7074 -2.1925 1.1434 17 7 2.0289 -3.5608 0.6883 18 6 2.2210 -4.6497 1.4962 19 1 2.1417 -4.5474 2.5683 20 6 2.5188 -5.8848 0.9370 21 7 2.6159 -6.0095 -0.3697 22 14 2.7816 -7.3700 2.0391 23 1 2.6189 -6.9677 3.4592 24 1 1.7844 -8.4180 1.7035 25 1 4.1512 -7.9050 1.8305 26 6 2.1063 -3.5588 -0.7798 27 6 1.8484 -2.1130 -1.2537 28 1 0.8027 -1.9785 -1.5302 29 8 2.7056 -1.7787 -2.3471 30 1 -0.3634 0.1025 1.0225 31 1 -0.3633 0.8343 -0.6001 32 1 -0.3633 -0.9368 -0.4226 33 1 3.9463 3.9833 -1.0148 34 1 3.7375 4.5776 0.6597 35 1 2.9558 5.9081 -1.9523 36 1 3.5075 6.6581 -0.4177 37 1 0.8327 6.5474 -1.1469 38 1 1.3687 6.5247 0.5597 39 1 2.2390 -1.9669 2.0679 40 1 0.6328 -2.0802 1.2876 41 1 2.8244 -6.8725 -0.7603 42 1 1.3482 -4.2247 -1.1920 43 1 3.0970 -3.8824 -1.0992 44 1 2.5775 -2.3311 -3.1303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047442005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:57 Heat of formation + Delta-G solvation = 48.738324 kcal Electronic energy + Delta-G solvation = -27498.032611 eV Core-core repulsion = 23646.948610 eV Total energy + Delta-G solvation = -3851.084001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.03642 -39.57289 -37.64849 -37.05514 -35.10108 -34.65016 -32.30130 -31.54326 -29.03194 -28.56954 -27.78450 -27.20621 -26.55187 -24.71079 -23.43800 -21.93695 -20.41306 -20.34425 -19.95719 -18.74486 -17.80111 -17.00409 -16.93408 -16.45581 -16.24503 -15.72088 -15.16494 -14.64157 -14.44513 -14.02335 -13.84020 -13.62995 -13.35413 -13.06524 -12.94660 -12.75695 -12.62655 -12.27455 -12.07879 -12.01412 -11.85234 -11.43664 -11.41061 -11.30346 -11.17298 -10.84225 -10.76943 -10.61378 -10.09964 -9.89339 -9.81342 -9.75112 -9.42472 -9.21788 -8.79173 -8.67226 -8.21679 -6.88456 -5.73515 -3.08341 1.51883 1.96044 2.45853 3.19633 3.40486 3.46018 3.48562 3.54891 4.00236 4.33627 4.43028 4.48420 4.68947 4.75048 4.88644 4.98643 5.23182 5.32710 5.40300 5.44197 5.46800 5.49259 5.60774 5.63167 5.72001 5.74349 5.87059 5.91796 5.94306 5.98071 6.09561 6.12448 6.19146 6.31325 6.56621 6.68985 6.81939 7.01235 7.39207 7.50852 7.61653 7.75720 7.77819 8.19520 8.26425 8.44171 9.17209 9.77118 10.41204 11.38012 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029408 B = 0.002834 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.887736 B = 9876.772142 C = 9987.538229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.588 5.588 3 C 0.598 3.402 4 O -0.528 6.528 5 C 0.021 3.979 6 N -0.249 5.249 7 N -0.370 5.370 8 H 0.442 0.558 9 C -0.025 4.025 10 C -0.159 4.159 11 C -0.048 4.048 12 C -0.116 4.116 13 C -0.035 4.035 14 C 0.135 3.865 15 H 0.116 0.884 16 C 0.132 3.868 17 N -0.600 5.600 18 C -0.227 4.227 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.152 3.848 27 C 0.065 3.935 28 H 0.056 0.944 29 O -0.561 6.561 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.028 0.972 41 H 0.252 0.748 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 24.559 -2.834 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.319 5.319 3 C 0.384 3.616 4 O -0.402 6.402 5 C -0.140 4.140 6 N -0.084 5.084 7 N -0.082 5.082 8 H 0.285 0.715 9 C -0.152 4.152 10 C -0.169 4.169 11 C -0.087 4.087 12 C -0.154 4.154 13 C -0.074 4.074 14 C 0.031 3.969 15 H 0.134 0.866 16 C 0.005 3.995 17 N -0.327 5.327 18 C -0.355 4.355 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.746 3.254 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.027 3.973 27 C 0.004 3.996 28 H 0.073 0.927 29 O -0.365 6.365 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.904 24.132 -2.298 25.205 hybrid contribution -0.240 -0.844 0.073 0.880 sum -7.144 23.289 -2.225 24.461 Atomic orbital electron populations 1.22095 0.79119 1.03427 1.02379 1.47571 1.07324 1.05362 1.71667 1.16946 0.86217 0.81536 0.76916 1.90784 1.12809 1.86402 1.50230 1.21430 0.89113 0.94256 1.09153 1.73935 1.15902 0.98220 1.20358 1.42773 1.08558 1.03198 1.53633 0.71458 1.22177 0.86846 0.98071 1.08092 1.20845 0.97157 0.91146 1.07773 1.20407 0.93218 0.92790 1.02254 1.22441 0.94081 0.97289 1.01545 1.20623 0.96246 0.88186 1.02360 1.22417 0.98494 0.81087 0.94939 0.86646 1.21828 0.97519 0.85373 0.94815 1.44313 1.83285 1.03279 1.01853 1.19122 1.41191 0.85747 0.89460 0.90079 1.24825 1.01762 0.97757 0.96082 1.69950 1.54971 1.23458 1.08633 0.85992 0.77455 0.82598 0.79398 1.20437 1.21746 1.21671 1.21847 1.01911 0.89128 0.84447 1.23573 0.92137 0.97267 0.86580 0.92652 1.86491 1.63450 1.61301 1.25298 0.92595 0.89066 0.91093 0.90080 0.90131 0.90494 0.89790 0.90525 0.89634 0.93273 0.95444 0.93716 0.93460 0.92132 0.77988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 8.25 59.85 0.49 1.56 16 2 N -0.59 -10.55 2.91 -172.63 -0.50 -11.05 16 3 C 0.60 11.18 7.68 -12.39 -0.10 11.08 16 4 O -0.53 -11.45 16.32 5.30 0.09 -11.36 16 5 C 0.02 0.32 6.83 -82.80 -0.57 -0.25 16 6 N -0.25 -3.16 8.74 33.40 0.29 -2.87 16 7 N -0.37 -3.40 6.84 33.62 0.23 -3.17 16 8 H 0.44 2.24 8.96 -190.44 -1.71 0.53 16 9 C -0.03 -0.24 8.12 -81.95 -0.67 -0.91 16 10 C -0.16 -2.07 6.83 -104.44 -0.71 -2.79 16 11 C -0.05 -0.51 6.78 -26.97 -0.18 -0.69 16 12 C -0.12 -0.75 7.13 -25.16 -0.18 -0.93 16 13 C -0.04 -0.21 6.78 -26.84 -0.18 -0.39 16 14 C 0.13 2.78 3.17 -65.78 -0.21 2.57 16 15 H 0.12 2.71 7.02 -51.93 -0.36 2.35 16 16 C 0.13 2.88 6.81 -2.35 -0.02 2.86 16 17 N -0.60 -15.64 3.40 -169.83 -0.58 -16.22 16 18 C -0.23 -6.40 10.29 -15.06 -0.15 -6.56 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -27.09 10.31 55.49 0.57 -26.52 16 22 Si 0.92 22.26 29.55 -169.99 -5.02 17.24 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 C 0.15 3.75 5.14 -3.07 -0.02 3.74 16 27 C 0.06 1.32 3.87 -24.89 -0.10 1.22 16 28 H 0.06 1.04 6.47 -51.93 -0.34 0.70 16 29 O -0.56 -11.04 13.40 -35.23 -0.47 -11.51 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.23 5.29 -51.93 -0.27 0.95 16 32 H 0.07 1.02 6.37 -51.93 -0.33 0.69 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 40 H 0.03 0.57 6.95 -51.93 -0.36 0.21 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.05 1.24 7.51 -51.93 -0.39 0.86 16 43 H 0.06 1.67 7.29 -51.93 -0.38 1.30 16 44 H 0.37 5.73 9.11 45.56 0.42 6.15 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -35.94 352.18 -9.42 -45.36 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.65 Total: 4.59 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -2.68 Total: 10.20 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.01 Total: -59.83 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.39 Total: -22.87 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.94 -9.42 -45.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047442005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.101 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds