Wall clock time and date at job start Tue Mar 31 2020 04:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34495 * 126.47169 * 2 1 4 4 N 1.30856 * 109.16659 * 180.02562 * 3 2 1 5 5 C 1.33321 * 109.68544 * 359.76519 * 4 3 2 6 6 C 1.36667 * 107.77856 * 0.37990 * 5 4 3 7 7 C 1.46774 * 126.84118 * 179.89273 * 6 5 4 8 8 O 1.21673 * 119.99801 * 152.96362 * 7 6 5 9 9 N 1.34778 * 119.99837 * 332.97017 * 7 6 5 10 10 C 1.46835 * 120.40611 * 352.14754 * 9 7 6 11 11 C 1.53374 * 109.25272 * 232.22081 * 10 9 7 12 12 C 1.52782 * 108.80823 * 306.17573 * 11 10 9 13 13 H 1.09002 * 109.34507 * 303.33376 * 12 11 10 14 14 O 1.42609 * 111.11937 * 182.55403 * 12 11 10 15 15 C 1.43142 * 113.63596 * 176.38451 * 14 12 11 16 16 C 1.53197 * 109.69484 * 61.71764 * 15 14 12 17 17 N 1.47328 * 108.80870 * 308.69954 * 16 15 14 18 18 C 1.36935 * 121.34267 * 230.30289 * 17 16 15 19 19 H 1.08004 * 119.99743 * 137.77216 * 18 17 16 20 20 C 1.38812 * 120.00433 * 317.77116 * 18 17 16 21 21 N 1.31611 * 120.00110 * 171.91195 * 20 18 17 22 22 Si 1.86795 * 119.99633 * 351.91084 * 20 18 17 23 23 H 1.48500 * 109.47068 * 85.57586 * 22 20 18 24 24 H 1.48503 * 109.47046 * 205.57295 * 22 20 18 25 25 H 1.48497 * 109.47358 * 325.57435 * 22 20 18 26 26 C 1.46876 * 117.35492 * 50.32919 * 17 16 15 27 27 H 1.09000 * 110.21398 * 67.95413 * 26 17 16 28 28 C 1.47127 * 120.40527 * 172.13040 * 9 7 6 29 29 H 1.08998 * 109.47210 * 274.64146 * 1 2 3 30 30 H 1.09004 * 109.47752 * 34.64064 * 1 2 3 31 31 H 1.08999 * 109.47311 * 154.64164 * 1 2 3 32 32 H 1.08004 * 125.42044 * 0.02562 * 3 2 1 33 33 H 1.07988 * 126.11114 * 180.28049 * 5 4 3 34 34 H 1.09001 * 109.50626 * 112.29288 * 10 9 7 35 35 H 1.08998 * 109.54517 * 352.17730 * 10 9 7 36 36 H 1.08994 * 109.58142 * 186.37392 * 11 10 9 37 37 H 1.09000 * 109.57985 * 65.96572 * 11 10 9 38 38 H 1.09008 * 109.42432 * 181.76530 * 15 14 12 39 39 H 1.08992 * 109.42945 * 301.66003 * 15 14 12 40 40 H 1.09006 * 109.58210 * 68.54587 * 16 15 14 41 41 H 1.08996 * 109.58655 * 188.95775 * 16 15 14 42 42 H 0.96999 * 120.00415 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.72820 * 246.45975 * 28 9 7 44 44 H 1.08999 * 109.72556 * 7.09155 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2644 1.0815 0.0000 4 7 3.5137 0.6923 -0.0006 5 6 3.5691 -0.6398 0.0042 6 6 2.2862 -1.1108 -0.0007 7 6 1.8649 -2.5167 -0.0003 8 8 0.7891 -2.8293 0.4745 9 7 2.6698 -3.4615 -0.5256 10 6 3.8872 -3.0803 -1.2526 11 6 3.8943 -3.7685 -2.6232 12 6 3.7099 -5.2716 -2.4206 13 1 4.4924 -5.6456 -1.7603 14 8 3.7678 -5.9685 -3.6634 15 6 3.6829 -7.3910 -3.5282 16 6 2.3395 -7.7704 -2.8972 17 7 2.1504 -6.9775 -1.6700 18 6 1.8064 -7.5706 -0.4846 19 1 2.2811 -7.2575 0.4336 20 6 0.8477 -8.5742 -0.4631 21 7 0.6307 -9.2533 0.6432 22 14 -0.1342 -8.9609 -2.0043 23 1 0.6256 -9.9178 -2.8483 24 1 -1.4369 -9.5635 -1.6231 25 1 -0.3721 -7.7091 -2.7668 26 6 2.3448 -5.5250 -1.7683 27 1 1.5586 -5.0802 -2.3785 28 6 2.3394 -4.8876 -0.3775 29 1 -0.3633 0.0832 1.0243 30 1 -0.3635 0.8455 -0.5841 31 1 -0.3634 -0.9286 -0.4401 32 1 1.9287 2.1081 0.0004 33 1 4.4672 -1.2394 0.0093 34 1 4.7633 -3.3924 -0.6841 35 1 3.9075 -1.9990 -1.3881 36 1 4.8456 -3.5810 -3.1212 37 1 3.0781 -3.3792 -3.2317 38 1 3.7652 -7.8542 -4.5116 39 1 4.4947 -7.7438 -2.8923 40 1 1.5330 -7.5570 -3.5988 41 1 2.3392 -8.8318 -2.6489 42 1 -0.0390 -9.9549 0.6582 43 1 3.0836 -5.3741 0.2530 44 1 1.3518 -4.9917 0.0718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074290318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:15 Heat of formation + Delta-G solvation = 33.502489 kcal Electronic energy + Delta-G solvation = -28470.870811 eV Core-core repulsion = 24619.126135 eV Total energy + Delta-G solvation = -3851.744676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.42408 -40.03298 -38.58740 -36.30757 -34.91519 -34.19635 -32.16038 -31.70411 -30.77977 -29.62375 -27.41032 -27.26745 -25.48018 -24.11737 -23.08928 -21.99503 -21.53294 -21.30536 -19.93455 -19.22022 -17.41783 -16.98891 -16.68600 -16.11006 -15.74334 -15.66177 -15.58758 -15.09091 -14.60707 -14.35480 -14.05976 -13.93171 -13.84429 -13.69563 -13.37176 -13.15928 -12.97306 -12.77550 -12.63522 -12.51552 -11.92342 -11.86761 -11.33949 -11.22654 -10.90823 -10.66706 -10.53260 -10.49485 -10.33483 -9.90100 -9.85185 -9.79138 -9.69537 -9.22052 -8.74146 -8.63321 -8.46092 -6.83915 -6.04820 -3.62040 1.26388 2.29549 2.70782 3.11887 3.23411 3.25986 3.41443 3.46121 4.04424 4.35895 4.42368 4.44441 4.57272 4.66805 4.89110 4.97558 5.01338 5.08421 5.21783 5.23783 5.27135 5.33829 5.46219 5.58154 5.58999 5.69152 5.79903 5.83156 5.91325 5.94365 6.00572 6.12014 6.22774 6.28728 6.37452 6.51230 6.55868 6.63022 6.81191 6.84137 7.45597 7.62358 7.69777 7.94490 8.18042 8.27962 8.77932 9.57729 10.01056 11.09201 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.004269 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.239238 B = 6557.244123 C = 7553.712369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.428 5.428 3 C 0.198 3.802 4 N -0.497 5.497 5 C 0.024 3.976 6 C -0.074 4.074 7 C 0.589 3.411 8 O -0.536 6.536 9 N -0.597 5.597 10 C 0.093 3.907 11 C -0.122 4.122 12 C 0.074 3.926 13 H 0.058 0.942 14 O -0.385 6.385 15 C 0.049 3.951 16 C 0.093 3.907 17 N -0.602 5.602 18 C -0.274 4.274 19 H 0.085 0.915 20 C 0.041 3.959 21 N -0.904 5.904 22 Si 0.892 3.108 23 H -0.284 1.284 24 H -0.301 1.301 25 H -0.270 1.270 26 C 0.139 3.861 27 H 0.040 0.960 28 C 0.129 3.871 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.211 0.789 33 H 0.185 0.815 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.032 0.968 41 H 0.080 0.920 42 H 0.265 0.735 43 H 0.080 0.920 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 17.338 -5.059 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.109 5.109 3 C -0.084 4.084 4 N -0.215 5.215 5 C -0.129 4.129 6 C -0.191 4.191 7 C 0.377 3.623 8 O -0.414 6.414 9 N -0.330 5.330 10 C -0.030 4.030 11 C -0.161 4.161 12 C 0.015 3.985 13 H 0.076 0.924 14 O -0.304 6.304 15 C -0.029 4.029 16 C -0.032 4.032 17 N -0.328 5.328 18 C -0.402 4.402 19 H 0.103 0.897 20 C -0.161 4.161 21 N -0.545 5.545 22 Si 0.721 3.279 23 H -0.211 1.211 24 H -0.228 1.228 25 H -0.195 1.195 26 C 0.032 3.968 27 H 0.058 0.942 28 C 0.008 3.992 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.228 0.772 33 H 0.202 0.798 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.829 17.613 -4.856 18.897 hybrid contribution -1.383 -1.100 -0.618 1.872 sum 3.447 16.513 -5.474 17.734 Atomic orbital electron populations 1.22219 0.75275 1.05349 1.04349 1.45272 1.08319 1.05837 1.51466 1.25089 0.85614 0.93558 1.04089 1.70158 1.19001 1.12119 1.20229 1.22857 0.95415 0.91138 1.03476 1.20934 0.91665 0.88962 1.17559 1.16811 0.83863 0.83013 0.78654 1.90841 1.21483 1.82157 1.46915 1.47943 1.24240 1.07103 1.53706 1.22270 0.87211 1.01302 0.92169 1.21843 1.03348 0.94055 0.96860 1.22491 0.98300 0.91441 0.86304 0.92370 1.87769 1.94537 1.18632 1.29456 1.23056 0.98455 0.80899 1.00472 1.22056 0.94761 0.97170 0.89257 1.44205 1.82153 0.99572 1.06877 1.18728 1.17598 1.18300 0.85594 0.89729 1.25605 0.96054 0.98151 0.96285 1.69745 1.34868 1.23169 1.26709 0.86778 0.79464 0.78215 0.83396 1.21092 1.22834 1.19499 1.21357 0.94574 0.86324 0.94595 0.94191 1.21801 1.04314 0.75688 0.97355 0.89756 0.89396 0.88399 0.77233 0.79841 0.90630 0.87944 0.89868 0.90916 0.89676 0.93085 0.95009 0.90176 0.92471 0.90213 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.69 59.84 0.64 1.24 16 2 N -0.43 -4.77 3.17 -121.98 -0.39 -5.16 16 3 C 0.20 1.93 12.52 -90.57 -1.13 0.79 16 4 N -0.50 -6.01 11.20 -14.43 -0.16 -6.17 16 5 C 0.02 0.29 9.47 -17.47 -0.17 0.13 16 6 C -0.07 -0.99 6.37 -82.14 -0.52 -1.51 16 7 C 0.59 9.60 7.45 -12.81 -0.10 9.50 16 8 O -0.54 -10.56 14.99 5.21 0.08 -10.48 16 9 N -0.60 -9.24 2.98 -174.20 -0.52 -9.76 16 10 C 0.09 1.09 5.06 -3.67 -0.02 1.08 16 11 C -0.12 -1.58 5.82 -26.65 -0.16 -1.74 16 12 C 0.07 1.24 2.48 -26.63 -0.07 1.18 16 13 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 14 O -0.38 -6.91 10.49 -35.23 -0.37 -7.28 16 15 C 0.05 0.86 6.96 37.26 0.26 1.12 16 16 C 0.09 1.97 4.41 -3.49 -0.02 1.96 16 17 N -0.60 -13.98 2.62 -164.37 -0.43 -14.41 16 18 C -0.27 -7.34 8.95 -15.06 -0.13 -7.47 16 19 H 0.09 2.41 6.89 -52.48 -0.36 2.05 16 20 C 0.04 1.14 5.39 -17.43 -0.09 1.05 16 21 N -0.90 -27.06 13.97 55.49 0.78 -26.29 16 22 Si 0.89 22.26 24.42 -169.99 -4.15 18.11 16 23 H -0.28 -6.73 6.72 56.52 0.38 -6.35 16 24 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.27 -6.79 6.66 56.52 0.38 -6.41 16 26 C 0.14 2.78 3.03 -67.52 -0.20 2.57 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 C 0.13 2.46 4.67 -3.70 -0.02 2.45 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.10 1.07 6.99 -51.93 -0.36 0.71 16 32 H 0.21 1.09 8.06 -52.48 -0.42 0.66 16 33 H 0.18 1.80 6.29 -52.49 -0.33 1.47 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.05 4.29 -51.93 -0.22 0.83 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.03 0.70 6.65 -51.93 -0.35 0.35 16 41 H 0.08 1.78 5.84 -51.93 -0.30 1.47 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 1.54 7.34 -51.93 -0.38 1.16 16 44 H 0.11 2.42 6.81 -51.93 -0.35 2.06 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -34.18 338.34 -7.86 -42.05 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.07 Total: 1.95 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: -1.72 Total: 12.33 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.72 Total: -61.78 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.29 Total: -17.75 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.15 Total: 18.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.18 -7.86 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074290318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.551 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds