Wall clock time and date at job start Tue Mar 31 2020 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35033 * 124.88688 * 2 1 4 4 C 1.35367 * 107.22670 * 179.75840 * 3 2 1 5 5 C 1.41500 * 105.50595 * 0.35560 * 4 3 2 6 6 C 1.47711 * 126.51940 * 179.90086 * 5 4 3 7 7 O 1.21568 * 120.00192 * 353.25045 * 6 5 4 8 8 N 1.34780 * 119.99573 * 173.24882 * 6 5 4 9 9 C 1.46838 * 120.41306 * 353.83586 * 8 6 5 10 10 C 1.53366 * 109.24264 * 232.23592 * 9 8 6 11 11 C 1.52778 * 108.81730 * 306.16087 * 10 9 8 12 12 H 1.08997 * 109.34416 * 302.84971 * 11 10 9 13 13 O 1.42598 * 111.12120 * 182.54907 * 11 10 9 14 14 C 1.43155 * 113.62785 * 176.35470 * 13 11 10 15 15 C 1.52741 * 109.81761 * 61.53644 * 14 13 11 16 16 N 1.47351 * 109.05210 * 309.06167 * 15 14 13 17 17 C 1.36932 * 121.30063 * 230.16884 * 16 15 14 18 18 H 1.08006 * 119.99300 * 151.74118 * 17 16 15 19 19 C 1.38811 * 120.00584 * 331.73537 * 17 16 15 20 20 N 1.31615 * 119.99500 * 340.92915 * 19 17 16 21 21 Si 1.86797 * 120.00101 * 160.92474 * 19 17 16 22 22 H 1.48497 * 109.47340 * 265.09456 * 21 19 17 23 23 H 1.48501 * 109.47159 * 25.09927 * 21 19 17 24 24 H 1.48501 * 109.46952 * 145.09486 * 21 19 17 25 25 C 1.46874 * 117.39069 * 49.90068 * 16 15 14 26 26 H 1.09005 * 109.66030 * 68.61543 * 25 16 15 27 27 C 1.47132 * 120.40148 * 173.81590 * 8 6 5 28 28 N 1.28472 * 124.88238 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47414 * 269.98295 * 1 2 3 30 30 H 1.09005 * 109.46975 * 29.97945 * 1 2 3 31 31 H 1.08999 * 109.47070 * 149.97435 * 1 2 3 32 32 H 1.07998 * 126.38913 * 0.02788 * 3 2 1 33 33 H 1.08004 * 127.24835 * 180.24223 * 4 3 2 34 34 H 1.09004 * 109.50605 * 352.16996 * 9 8 6 35 35 H 1.09003 * 109.50590 * 112.30374 * 9 8 6 36 36 H 1.09005 * 109.57691 * 65.95999 * 10 9 8 37 37 H 1.08995 * 109.57837 * 186.35791 * 10 9 8 38 38 H 1.08996 * 109.42465 * 181.76956 * 14 13 11 39 39 H 1.09000 * 109.41863 * 301.60151 * 14 13 11 40 40 H 1.09005 * 109.50931 * 189.15843 * 15 14 13 41 41 H 1.08996 * 109.40411 * 68.90216 * 15 14 13 42 42 H 0.97005 * 119.99923 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.72987 * 7.12620 * 27 8 6 44 44 H 1.08997 * 109.72289 * 246.45586 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6970 0.0055 5 6 3.4740 -0.7170 0.0002 6 6 4.6272 -1.6400 0.0011 7 8 5.7555 -1.2032 -0.1170 8 7 4.4284 -2.9665 0.1329 9 6 3.0862 -3.4931 0.4108 10 6 3.1491 -4.4181 1.6325 11 6 4.2197 -5.4810 1.3912 12 1 3.9890 -6.0243 0.4749 13 8 4.2795 -6.4055 2.4752 14 6 5.2092 -7.4740 2.2674 15 6 6.6209 -6.9104 2.1179 16 7 6.6064 -5.8387 1.1067 17 6 7.5077 -5.8208 0.0761 18 1 7.2448 -5.3569 -0.8632 19 6 8.7594 -6.3986 0.2384 20 7 9.2289 -6.6228 1.4473 21 14 9.7773 -6.8581 -1.2590 22 1 9.5502 -8.2872 -1.5924 23 1 9.3744 -6.0111 -2.4103 24 1 11.2165 -6.6411 -0.9647 25 6 5.5834 -4.7938 1.2443 26 1 5.7959 -4.1860 2.1239 27 6 5.5538 -3.9049 -0.0005 28 7 2.1997 -1.0539 0.0005 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.8906 2.1305 0.0004 33 1 4.4109 1.3179 0.0106 34 1 2.4059 -2.6662 0.6149 35 1 2.7293 -4.0543 -0.4528 36 1 3.4049 -3.8365 2.5182 37 1 2.1820 -4.8998 1.7761 38 1 5.1768 -8.1535 3.1190 39 1 4.9407 -8.0169 1.3611 40 1 7.2978 -7.7035 1.7999 41 1 6.9525 -6.5060 3.0742 42 1 10.1034 -7.0269 1.5608 43 1 6.4885 -3.3498 -0.0785 44 1 5.4158 -4.5208 -0.8891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074409481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:54 Heat of formation + Delta-G solvation = 54.652934 kcal Electronic energy + Delta-G solvation = -28161.431920 eV Core-core repulsion = 24310.604396 eV Total energy + Delta-G solvation = -3850.827524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.78883 -39.82718 -38.35685 -35.94947 -34.64562 -33.66928 -31.80337 -31.31428 -30.84114 -29.78793 -27.92311 -26.84569 -25.19715 -23.84709 -22.90882 -21.81532 -21.60520 -20.90661 -19.66227 -19.09936 -17.36101 -16.78080 -16.70702 -16.42496 -15.62790 -15.31510 -15.01609 -14.92070 -14.40554 -14.18704 -13.95205 -13.72483 -13.56599 -13.26137 -13.04216 -12.98969 -12.88425 -12.82444 -12.55495 -12.32021 -11.86670 -11.24339 -11.18871 -10.89614 -10.84084 -10.62532 -10.33707 -10.18167 -10.14001 -9.92836 -9.73332 -9.52671 -9.33186 -9.17807 -8.92455 -8.47405 -8.22548 -6.67996 -5.80069 -3.23758 1.53115 2.06052 2.25248 3.26248 3.39337 3.46958 3.48742 3.57819 4.12126 4.36218 4.48706 4.57450 4.66658 4.70466 4.96544 5.06903 5.13411 5.33219 5.36773 5.49279 5.54102 5.56674 5.63952 5.75752 5.84092 5.93444 5.97314 6.06709 6.15926 6.23110 6.30827 6.36360 6.40109 6.54389 6.61038 6.73905 6.87216 6.96102 7.15862 7.49734 7.63814 7.78514 7.82929 7.94438 8.36709 8.46101 9.14028 9.78274 10.37290 11.28407 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.003883 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.780183 B = 7208.403022 C = 8367.648726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.292 5.292 3 C -0.019 4.019 4 C -0.179 4.179 5 C -0.003 4.003 6 C 0.597 3.403 7 O -0.530 6.530 8 N -0.597 5.597 9 C 0.092 3.908 10 C -0.122 4.122 11 C 0.077 3.923 12 H 0.052 0.948 13 O -0.390 6.390 14 C 0.040 3.960 15 C 0.144 3.856 16 N -0.587 5.587 17 C -0.261 4.261 18 H 0.072 0.928 19 C 0.009 3.991 20 N -0.897 5.897 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.277 1.277 24 H -0.291 1.291 25 C 0.138 3.862 26 H 0.038 0.962 27 C 0.124 3.876 28 N -0.263 5.263 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.181 0.819 33 H 0.163 0.837 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.088 0.912 41 H 0.028 0.972 42 H 0.254 0.746 43 H 0.103 0.897 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.416 11.485 -1.837 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.079 5.079 3 C -0.162 4.162 4 C -0.207 4.207 5 C -0.163 4.163 6 C 0.383 3.617 7 O -0.404 6.404 8 N -0.330 5.330 9 C -0.031 4.031 10 C -0.161 4.161 11 C 0.018 3.982 12 H 0.070 0.930 13 O -0.309 6.309 14 C -0.038 4.038 15 C 0.018 3.982 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.090 0.910 19 C -0.191 4.191 20 N -0.540 5.540 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.202 1.202 24 H -0.217 1.217 25 C 0.030 3.970 26 H 0.055 0.945 27 C 0.002 3.998 28 N -0.099 5.099 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.198 0.802 33 H 0.180 0.820 34 H 0.144 0.856 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.572 10.760 -1.712 23.279 hybrid contribution 1.208 0.257 -0.808 1.476 sum -19.363 11.017 -2.520 22.420 Atomic orbital electron populations 1.22161 0.73429 1.05391 1.04423 1.45599 1.07767 1.03374 1.51205 1.22837 0.90999 0.93658 1.08676 1.21807 0.97371 0.93581 1.07894 1.22098 0.90583 0.94317 1.09280 1.16996 0.86452 0.81214 0.77053 1.90808 1.22739 1.76418 1.50482 1.48088 1.10128 1.05457 1.69330 1.22401 0.84319 0.99514 0.96902 1.21855 0.98962 0.96509 0.98744 1.22459 0.95832 0.90273 0.89668 0.93034 1.87742 1.62132 1.38462 1.42569 1.23221 0.91976 0.88669 0.99912 1.21272 0.92207 0.92360 0.92332 1.44012 1.34403 1.22448 1.30321 1.19139 0.92551 1.36320 0.90940 0.91020 1.25059 0.95976 1.01872 0.96210 1.70077 1.18069 1.45900 1.19967 0.86286 0.79500 0.78485 0.82650 1.21453 1.20163 1.21702 1.21295 0.89504 0.90361 0.95857 0.94456 1.21814 0.89317 0.90503 0.98132 1.73379 1.03146 1.12961 1.20395 0.89719 0.88752 0.88523 0.80186 0.81970 0.85591 0.91775 0.91168 0.90505 0.90087 0.94163 0.89368 0.95350 0.93563 0.87854 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.33 11.31 59.84 0.68 1.01 16 2 N -0.29 -2.64 3.70 -68.13 -0.25 -2.89 16 3 C -0.02 -0.16 11.46 -17.17 -0.20 -0.36 16 4 C -0.18 -2.18 10.81 -39.36 -0.43 -2.61 16 5 C 0.00 -0.05 6.83 -82.76 -0.57 -0.61 16 6 C 0.60 11.08 7.69 -12.39 -0.10 10.98 16 7 O -0.53 -11.59 16.34 5.31 0.09 -11.50 16 8 N -0.60 -10.75 2.98 -173.85 -0.52 -11.27 16 9 C 0.09 1.36 6.09 -3.67 -0.02 1.33 16 10 C -0.12 -1.90 5.82 -26.66 -0.16 -2.05 16 11 C 0.08 1.49 2.48 -26.63 -0.07 1.43 16 12 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 13 O -0.39 -8.01 10.49 -35.23 -0.37 -8.38 16 14 C 0.04 0.81 6.94 37.02 0.26 1.07 16 15 C 0.14 3.52 5.41 -3.71 -0.02 3.50 16 16 N -0.59 -15.07 3.04 -164.62 -0.50 -15.57 16 17 C -0.26 -7.15 8.83 -15.06 -0.13 -7.28 16 18 H 0.07 1.92 6.31 -52.48 -0.33 1.59 16 19 C 0.01 0.24 4.88 -17.43 -0.09 0.15 16 20 N -0.90 -26.29 11.47 55.49 0.64 -25.66 16 21 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.14 3.09 3.03 -67.52 -0.20 2.89 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 C 0.12 2.60 4.50 -3.70 -0.02 2.58 16 28 N -0.26 -3.29 8.42 33.42 0.28 -3.01 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.11 8.13 -51.93 -0.42 -0.31 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 34 H 0.13 1.71 4.13 -75.96 -0.31 1.39 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 2.32 6.42 -51.93 -0.33 1.98 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.10 2.46 6.79 -51.93 -0.35 2.11 16 44 H 0.07 1.52 7.37 -51.93 -0.38 1.14 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -34.94 348.40 -7.81 -42.75 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.34 Total: 1.36 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.05 Total: 12.03 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.35 Total: -58.39 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.28 Total: -19.88 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.94 -7.81 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074409481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.407 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds