Wall clock time and date at job start Tue Mar 31 2020 04:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47559 * 2 1 4 4 C 1.36006 * 117.00216 * 180.02562 * 3 2 1 5 5 C 1.39689 * 125.66967 * 180.32604 * 4 3 2 6 6 C 1.37985 * 107.63653 * 180.12961 * 5 4 3 7 7 C 1.47166 * 126.43858 * 179.84142 * 6 5 4 8 8 O 1.21631 * 119.99642 * 7.88753 * 7 6 5 9 9 N 1.34774 * 120.00121 * 187.88777 * 7 6 5 10 10 C 1.47354 * 125.53123 * 357.19301 * 9 7 6 11 11 C 1.54935 * 104.89449 * 156.81015 * 10 9 7 12 12 C 1.54805 * 101.49851 * 37.23323 * 11 10 9 13 13 H 1.09000 * 112.63835 * 85.34749 * 12 11 10 14 14 C 1.53268 * 109.74798 * 212.29180 * 12 11 10 15 15 N 1.46585 * 108.15905 * 95.76509 * 14 12 11 16 16 C 1.36934 * 125.30560 * 177.88750 * 15 14 12 17 17 H 1.08003 * 120.00112 * 3.86850 * 16 15 14 18 18 C 1.38810 * 119.99832 * 183.86159 * 16 15 14 19 19 N 1.31624 * 119.99856 * 4.84972 * 18 16 15 20 20 Si 1.86802 * 120.00077 * 184.84327 * 18 16 15 21 21 H 1.48499 * 109.46880 * 85.00399 * 20 18 16 22 22 H 1.48497 * 109.47260 * 205.00299 * 20 18 16 23 23 H 1.48494 * 109.47069 * 325.00326 * 20 18 16 24 24 C 1.46607 * 109.38470 * 357.89088 * 15 14 12 25 25 C 1.47221 * 125.52785 * 177.50676 * 9 7 6 26 26 H 1.08997 * 112.29010 * 55.97788 * 25 9 7 27 27 N 1.36679 * 107.12621 * 359.57864 * 6 5 4 28 28 H 0.96996 * 126.09217 * 180.25767 * 27 6 5 29 29 N 1.31222 * 125.66716 * 359.97438 * 4 3 2 30 30 H 1.09004 * 109.46976 * 59.99411 * 1 2 3 31 31 H 1.08999 * 109.47420 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46520 * 300.00043 * 1 2 3 33 33 H 1.09007 * 109.47171 * 240.00025 * 2 1 3 34 34 H 1.09001 * 109.47407 * 120.00302 * 2 1 3 35 35 H 1.07994 * 126.18470 * 359.96418 * 5 4 3 36 36 H 1.08997 * 110.35583 * 275.66333 * 10 9 7 37 37 H 1.08998 * 110.35153 * 37.95245 * 10 9 7 38 38 H 1.09007 * 111.01600 * 279.18411 * 11 10 9 39 39 H 1.08997 * 111.05657 * 155.30131 * 11 10 9 40 40 H 1.08998 * 109.73490 * 215.45516 * 14 12 11 41 41 H 1.09001 * 109.73590 * 336.10577 * 14 12 11 42 42 H 0.97002 * 119.99340 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.91379 * 258.45420 * 24 15 14 44 44 H 1.08998 * 109.91581 * 137.17156 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.0136 2.7571 0.0058 6 6 5.3703 2.5055 -0.0002 7 6 6.4457 3.5102 0.0000 8 8 6.1782 4.6872 0.1504 9 7 7.7268 3.1262 -0.1664 10 6 8.1933 1.7348 -0.2997 11 6 9.5500 1.8389 -1.0406 12 6 10.1405 3.1299 -0.4233 13 1 10.6695 2.9440 0.5114 14 6 10.9984 3.8565 -1.4650 15 7 10.1698 4.8837 -2.1031 16 6 10.5990 5.7660 -3.0582 17 1 11.6057 5.6975 -3.4433 18 6 9.7402 6.7484 -3.5317 19 7 8.5467 6.8930 -2.9959 20 14 10.2783 7.8652 -4.9291 21 1 10.0040 7.1999 -6.2280 22 1 9.5258 9.1434 -4.8590 23 1 11.7328 8.1400 -4.8110 24 6 8.8099 4.8190 -1.5590 25 6 8.8879 4.0284 -0.2381 26 1 8.9647 4.6738 0.6369 27 7 5.5279 1.1478 -0.0004 28 1 6.3724 0.6706 -0.0005 29 7 4.2529 0.5687 -0.0006 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.5458 3.7304 0.0115 36 1 8.3318 1.2856 0.6837 37 1 7.4840 1.1518 -0.8872 38 1 9.4012 1.9517 -2.1146 39 1 10.1817 0.9775 -0.8239 40 1 11.8531 4.3242 -0.9764 41 1 11.3465 3.1465 -2.2152 42 1 7.9467 7.5798 -3.3265 43 1 8.1532 4.3052 -2.2611 44 1 8.4383 5.8257 -1.3678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075929549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:28 Heat of formation + Delta-G solvation = 58.732667 kcal Electronic energy + Delta-G solvation = -27344.340248 eV Core-core repulsion = 23493.689634 eV Total energy + Delta-G solvation = -3850.650613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55523 -40.05795 -38.49791 -37.72981 -35.18453 -32.65317 -32.10263 -30.85533 -30.65656 -30.18545 -28.61902 -26.99399 -24.69780 -24.40818 -23.31976 -21.95322 -21.46980 -20.51369 -19.94429 -19.32590 -18.00888 -17.15649 -16.90768 -16.51769 -15.94493 -15.78450 -15.29539 -14.81814 -14.52807 -14.30044 -14.08140 -13.80197 -13.59260 -13.38147 -13.04986 -12.88691 -12.72313 -12.65878 -12.30910 -12.09825 -11.91974 -11.69312 -11.32661 -11.12759 -11.09218 -10.95989 -10.81168 -10.57310 -10.28895 -10.13466 -9.90455 -9.80593 -9.70756 -9.20566 -8.76988 -8.66815 -8.41700 -6.85663 -5.61231 -3.09573 1.09071 2.30850 2.49349 2.74360 3.25108 3.35582 3.40980 3.45256 3.48406 4.31270 4.47764 4.50351 4.55902 4.72005 4.75359 4.79947 4.96779 5.06291 5.13903 5.26955 5.30793 5.36631 5.47915 5.52324 5.54365 5.64441 5.69068 5.75125 5.79794 5.86880 6.05914 6.10426 6.16581 6.38055 6.43196 6.58312 6.77043 6.81882 7.14399 7.35365 7.43955 7.58341 7.68195 7.90782 8.21391 8.40582 9.21843 9.82853 10.43133 11.38399 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.003160 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.492107 B = 8859.577699 C = 9881.139775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.288 6.288 4 C 0.262 3.738 5 C -0.197 4.197 6 C 0.075 3.925 7 C 0.592 3.408 8 O -0.495 6.495 9 N -0.602 5.602 10 C 0.084 3.916 11 C -0.119 4.119 12 C -0.109 4.109 13 H 0.091 0.909 14 C 0.145 3.855 15 N -0.599 5.599 16 C -0.233 4.233 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.912 5.912 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.151 3.849 25 C 0.117 3.883 26 H 0.090 0.910 27 N -0.454 5.454 28 H 0.444 0.556 29 N -0.328 5.328 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.168 0.832 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.254 0.746 43 H 0.015 0.985 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 -16.746 8.371 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 O -0.193 6.193 4 C 0.059 3.941 5 C -0.228 4.228 6 C -0.055 4.055 7 C 0.377 3.623 8 O -0.367 6.367 9 N -0.337 5.337 10 C -0.040 4.040 11 C -0.157 4.157 12 C -0.129 4.129 13 H 0.109 0.891 14 C 0.019 3.981 15 N -0.326 5.326 16 C -0.361 4.361 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.560 5.560 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.025 3.975 25 C 0.015 3.985 26 H 0.108 0.892 27 N -0.178 5.178 28 H 0.296 0.704 29 N -0.170 5.170 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.185 0.815 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.885 -16.878 8.347 20.413 hybrid contribution 0.535 0.684 -0.800 1.180 sum -7.350 -16.194 7.547 19.320 Atomic orbital electron populations 1.21795 0.92693 1.02866 1.03590 1.22715 0.95437 0.81309 1.02187 1.86321 1.13881 1.29572 1.89500 1.20201 0.84285 0.91957 0.97639 1.21072 0.89652 0.98317 1.13720 1.21375 0.95401 0.84297 1.04455 1.16604 0.80223 0.86977 0.78455 1.90926 1.81539 1.16236 1.47997 1.48472 1.05868 1.07939 1.71415 1.22610 0.97375 0.83918 1.00086 1.22797 0.93805 0.98049 1.01052 1.22904 0.96125 0.94660 0.99172 0.89120 1.20983 0.93416 0.91158 0.92579 1.44146 1.06359 1.36383 1.45708 1.19004 0.97730 1.06823 1.12555 0.90318 1.24858 0.96409 0.99046 1.00088 1.69789 1.07936 1.35401 1.42825 0.86099 0.77584 0.80007 0.81808 1.21602 1.21594 1.20703 1.21929 0.86556 1.01402 0.87574 1.23082 0.81922 0.91467 1.02065 0.89204 1.46954 1.06911 1.03751 1.60223 0.70351 1.77240 0.88468 1.20509 1.30793 0.91427 0.90306 0.91477 0.91771 0.91826 0.81488 0.90849 0.91295 0.89534 0.89832 0.95641 0.95572 0.93470 0.96739 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.06 0.56 6.33 37.16 0.24 0.79 16 3 O -0.29 -3.72 10.22 -19.76 -0.20 -3.92 16 4 C 0.26 3.76 7.85 -17.27 -0.14 3.63 16 5 C -0.20 -3.01 10.64 -39.13 -0.42 -3.43 16 6 C 0.08 1.16 6.90 -82.17 -0.57 0.59 16 7 C 0.59 10.66 7.64 -12.64 -0.10 10.56 16 8 O -0.50 -10.88 17.08 5.25 0.09 -10.79 16 9 N -0.60 -9.79 2.85 -163.02 -0.46 -10.26 16 10 C 0.08 0.96 5.46 -2.55 -0.01 0.94 16 11 C -0.12 -1.46 6.23 -24.76 -0.15 -1.62 16 12 C -0.11 -1.66 3.91 -88.33 -0.35 -2.00 16 13 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.14 2.79 6.65 -3.86 -0.03 2.77 16 15 N -0.60 -14.99 3.37 -172.22 -0.58 -15.57 16 16 C -0.23 -6.42 10.24 -15.06 -0.15 -6.58 16 17 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 18 C -0.01 -0.21 5.47 -17.43 -0.10 -0.30 16 19 N -0.91 -27.27 10.10 55.49 0.56 -26.71 16 20 Si 0.91 22.21 29.56 -169.99 -5.02 17.18 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.15 3.70 5.12 -3.39 -0.02 3.68 16 25 C 0.12 2.20 3.86 -65.74 -0.25 1.94 16 26 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 27 N -0.45 -5.80 6.72 33.41 0.22 -5.58 16 28 H 0.44 4.39 5.27 -182.65 -0.96 3.43 16 29 N -0.33 -4.49 12.05 30.46 0.37 -4.12 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 36 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.07 0.70 5.55 -51.93 -0.29 0.41 16 38 H 0.09 1.28 7.88 -51.93 -0.41 0.87 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.03 0.49 7.74 -51.93 -0.40 0.09 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.01 0.40 7.94 -51.93 -0.41 -0.02 16 44 H 0.11 3.28 5.84 -51.93 -0.30 2.98 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -33.77 355.69 -8.30 -42.07 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.97 Total: 2.03 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -1.66 Total: 10.31 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.11 Total: -62.24 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.11 Total: -14.72 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.77 -8.30 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075929549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.803 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds