Wall clock time and date at job start Tue Mar 31 2020 04:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28452 * 125.19430 * 2 1 4 4 C 1.31066 * 110.96411 * 179.97438 * 3 2 1 5 5 C 1.39529 * 107.60218 * 0.02562 * 4 3 2 6 6 C 1.36661 * 125.20227 * 179.97438 * 2 1 3 7 7 C 1.47165 * 126.93400 * 0.02562 * 6 2 1 8 8 O 1.21627 * 120.00063 * 266.97359 * 7 6 2 9 9 N 1.34778 * 119.99945 * 86.97840 * 7 6 2 10 10 C 1.46498 * 120.00210 * 185.29035 * 9 7 6 11 11 H 1.08996 * 110.64011 * 36.68866 * 10 9 7 12 12 C 1.54322 * 110.72250 * 273.54710 * 10 9 7 13 13 N 1.47021 * 107.27398 * 219.44450 * 12 10 9 14 14 C 1.36937 * 125.65002 * 178.97436 * 13 12 10 15 15 H 1.07997 * 120.00098 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99870 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99987 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99788 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47599 * 59.99741 * 18 16 14 20 20 H 1.48501 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47067 * 299.99879 * 18 16 14 22 22 C 1.47424 * 108.70137 * 358.94118 * 13 12 10 23 23 C 1.54908 * 104.83535 * 24.12694 * 22 13 12 24 24 H 1.09003 * 111.00043 * 81.06401 * 23 22 13 25 25 O 1.42898 * 111.00921 * 204.91671 * 23 22 13 26 26 C 1.50851 * 109.88248 * 179.97438 * 5 4 3 27 27 C 1.54423 * 105.16881 * 342.95034 * 26 5 4 28 28 C 1.51275 * 143.02404 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47025 * 85.28561 * 1 2 3 30 30 H 1.09004 * 109.47030 * 205.28638 * 1 2 3 31 31 H 1.09003 * 109.47194 * 325.28278 * 1 2 3 32 32 H 0.97004 * 119.99804 * 5.29299 * 9 7 6 33 33 H 1.09004 * 109.88367 * 338.85827 * 12 10 9 34 34 H 1.08999 * 109.88443 * 100.02073 * 12 10 9 35 35 H 0.97001 * 119.99991 * 180.02562 * 17 16 14 36 36 H 1.08997 * 110.36742 * 142.96880 * 22 13 12 37 37 H 1.09005 * 110.36526 * 265.18083 * 22 13 12 38 38 H 0.96701 * 113.99727 * 292.20299 * 25 23 22 39 39 H 1.08998 * 110.30812 * 101.87223 * 26 5 4 40 40 H 1.09002 * 110.30461 * 224.03317 * 26 5 4 41 41 H 1.09001 * 110.78339 * 144.54197 * 27 26 5 42 42 H 1.09001 * 110.78523 * 267.98245 * 27 26 5 43 43 H 1.08997 * 110.28150 * 316.09119 * 28 4 3 44 44 H 1.09007 * 110.28466 * 78.08972 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4757 0.7275 0.0005 5 6 3.5578 -0.6653 0.0003 6 6 2.2527 -1.1167 0.0005 7 6 1.8013 -2.5174 0.0006 8 8 1.6673 -3.1131 1.0525 9 7 1.5365 -3.1401 -1.1650 10 6 0.9772 -4.4941 -1.1615 11 1 0.2726 -4.6167 -0.3390 12 6 2.1008 -5.5488 -1.0796 13 7 1.7227 -6.6592 -1.9661 14 6 2.4642 -7.7881 -2.1920 15 1 3.4156 -7.9172 -1.6975 16 6 1.9924 -8.7670 -3.0558 17 7 0.8327 -8.6098 -3.6580 18 14 3.0035 -10.3072 -3.3634 19 1 3.2093 -11.0286 -2.0818 20 1 2.2848 -11.1886 -4.3183 21 1 4.3208 -9.9286 -3.9352 22 6 0.4128 -6.3563 -2.5708 23 6 0.3005 -4.8121 -2.5211 24 1 0.8466 -4.3540 -3.3459 25 8 -1.0670 -4.3975 -2.5220 26 6 5.0041 -1.0941 0.0003 27 6 5.7965 0.1573 -0.4365 28 6 4.8708 1.3124 0.0013 29 1 -0.3633 0.0845 -1.0242 30 1 -0.3633 -0.9292 0.4390 31 1 -0.3634 0.8447 0.5853 32 1 1.7162 -2.6917 -2.0062 33 1 3.0430 -5.1133 -1.4123 34 1 2.1976 -5.9086 -0.0553 35 1 0.5029 -9.2940 -4.2614 36 1 0.3814 -6.7060 -3.6027 37 1 -0.3880 -6.8153 -1.9909 38 1 -1.5314 -4.5758 -3.3513 39 1 5.3070 -1.4033 1.0006 40 1 5.1579 -1.9061 -0.7104 41 1 6.7533 0.2101 0.0830 42 1 5.9408 0.1662 -1.5169 43 1 4.9348 2.1379 -0.7076 44 1 5.1373 1.6530 1.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077993454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:28 Heat of formation + Delta-G solvation = 37.094942 kcal Electronic energy + Delta-G solvation = -27351.717401 eV Core-core repulsion = 23500.128505 eV Total energy + Delta-G solvation = -3851.588896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.77740 -39.61118 -37.81708 -37.09214 -35.16266 -34.16018 -32.39196 -31.85409 -30.84084 -28.52527 -27.69221 -27.01770 -26.53969 -24.65196 -23.01954 -21.59722 -20.76296 -20.44175 -20.12003 -19.45868 -17.66782 -17.16696 -16.89417 -16.60571 -15.88477 -15.71864 -15.22626 -14.92759 -14.68270 -14.25082 -14.06831 -13.72516 -13.44025 -13.10169 -13.00720 -12.92949 -12.84837 -12.67928 -12.37167 -12.04556 -11.96225 -11.60077 -11.35518 -11.33036 -11.18339 -11.05886 -10.84860 -10.48136 -10.27622 -10.17092 -9.97139 -9.80569 -9.38553 -9.08440 -8.95861 -8.75725 -8.66740 -6.96964 -5.76315 -3.18768 1.58896 2.01347 2.48200 2.68381 3.19686 3.36460 3.40690 3.41966 3.73621 4.33470 4.52898 4.53714 4.64269 4.70635 4.83448 4.89868 4.98100 5.10140 5.16876 5.18230 5.36832 5.47045 5.52379 5.56753 5.57502 5.63111 5.76734 5.78298 5.81234 5.93769 5.98548 6.02858 6.09534 6.33357 6.38863 6.62115 6.69205 6.80419 7.24546 7.44183 7.51725 7.66744 7.97051 7.99928 8.12799 8.21284 9.09679 9.70094 10.31935 11.28088 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.003282 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.241248 B = 8528.176455 C = 9652.520113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.273 5.273 3 N -0.269 5.269 4 C 0.004 3.996 5 C -0.184 4.184 6 C -0.007 4.007 7 C 0.592 3.408 8 O -0.519 6.519 9 N -0.700 5.700 10 C 0.142 3.858 11 H 0.101 0.899 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.224 4.224 15 H 0.080 0.920 16 C -0.010 4.010 17 N -0.925 5.925 18 Si 0.918 3.082 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.130 3.870 23 C 0.068 3.932 24 H 0.063 0.937 25 O -0.567 6.567 26 C -0.046 4.046 27 C -0.115 4.115 28 C -0.025 4.025 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.401 0.599 33 H 0.032 0.968 34 H 0.036 0.964 35 H 0.254 0.746 36 H 0.114 0.886 37 H 0.026 0.974 38 H 0.379 0.621 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 19.314 2.611 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.061 5.061 3 N -0.099 5.099 4 C -0.155 4.155 5 C -0.194 4.194 6 C -0.134 4.134 7 C 0.374 3.626 8 O -0.392 6.392 9 N -0.351 5.351 10 C 0.038 3.962 11 H 0.119 0.881 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.352 4.352 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.574 5.574 18 Si 0.749 3.251 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.210 1.210 22 C 0.004 3.996 23 C 0.008 3.992 24 H 0.081 0.919 25 O -0.372 6.372 26 C -0.084 4.084 27 C -0.153 4.153 28 C -0.064 4.064 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.236 0.764 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.044 0.956 38 H 0.226 0.774 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.925 19.762 3.873 20.230 hybrid contribution 0.678 -1.462 -1.043 1.920 sum 2.604 18.299 2.831 18.699 Atomic orbital electron populations 1.22178 0.72545 1.05510 1.04693 1.45681 1.07294 1.01014 1.52114 1.72639 1.02949 1.12803 1.21554 1.22727 0.92637 0.94311 1.05792 1.21134 0.93825 0.95530 1.08927 1.20526 0.90952 0.88956 1.12983 1.17005 0.77312 0.83883 0.84444 1.90863 1.50739 1.66314 1.31331 1.46016 1.63906 1.17244 1.07907 1.22117 0.95311 0.79984 0.98823 0.88139 1.21627 0.94568 0.88321 0.95181 1.44278 1.19798 1.18578 1.50101 1.19068 1.00442 0.93943 1.21737 0.90186 1.24796 0.97239 0.98883 0.99590 1.69712 1.19400 1.34710 1.33534 0.86091 0.78996 0.82333 0.77723 1.21062 1.21507 1.21049 1.22552 0.87407 0.86798 1.02833 1.23642 0.81645 0.98932 0.94997 0.91921 1.86385 1.24057 1.85074 1.41663 1.20391 0.87383 0.98216 1.02383 1.22380 0.97927 0.93129 1.01846 1.20398 0.85439 0.98027 1.02506 0.89413 0.88605 0.88382 0.76412 0.95034 0.94602 0.93515 0.86875 0.95562 0.77413 0.90092 0.90549 0.89819 0.90558 0.90358 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 11.22 59.84 0.67 1.53 16 2 N -0.27 -3.63 3.75 -63.95 -0.24 -3.87 16 3 N -0.27 -3.74 11.91 33.78 0.40 -3.33 16 4 C 0.00 0.06 8.13 -82.16 -0.67 -0.61 16 5 C -0.18 -2.51 7.02 -104.12 -0.73 -3.24 16 6 C -0.01 -0.10 6.71 -82.15 -0.55 -0.65 16 7 C 0.59 9.70 7.00 -12.64 -0.09 9.61 16 8 O -0.52 -10.37 16.89 5.25 0.09 -10.28 16 9 N -0.70 -10.73 5.12 -53.19 -0.27 -11.00 16 10 C 0.14 2.60 2.93 -66.10 -0.19 2.41 16 11 H 0.10 2.01 7.77 -51.93 -0.40 1.61 16 12 C 0.13 2.79 6.99 -3.07 -0.02 2.77 16 13 N -0.60 -15.05 3.39 -170.07 -0.58 -15.63 16 14 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 15 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 17 N -0.93 -25.94 10.09 55.49 0.56 -25.38 16 18 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.13 3.00 5.62 -2.53 -0.01 2.99 16 23 C 0.07 1.22 4.04 -24.58 -0.10 1.12 16 24 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 25 O -0.57 -9.06 13.47 -35.23 -0.47 -9.53 16 26 C -0.05 -0.49 6.76 -27.06 -0.18 -0.67 16 27 C -0.11 -0.89 7.07 -25.27 -0.18 -1.07 16 28 C -0.02 -0.22 6.76 -26.89 -0.18 -0.40 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.94 7.66 -51.93 -0.40 0.54 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 5.28 8.51 -40.82 -0.35 4.94 16 33 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.38 4.55 9.12 45.56 0.42 4.96 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -34.07 364.03 -8.18 -42.25 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.64 Total: 7.56 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -2.49 Total: 7.17 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.13 Total: -59.22 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.39 Total: -19.81 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.07 -8.18 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077993454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.346 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds