Wall clock time and date at job start Tue Mar 31 2020 04:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39935 * 125.75175 * 2 1 4 4 C 1.30446 * 108.89338 * 179.73427 * 3 2 1 5 5 C 1.41295 * 108.02285 * 0.38658 * 4 3 2 6 6 C 1.47435 * 126.41222 * 179.87505 * 5 4 3 7 7 O 1.21604 * 119.99930 * 179.68418 * 6 5 4 8 8 N 1.34775 * 120.00142 * 359.69249 * 6 5 4 9 9 C 1.46494 * 119.99937 * 179.72107 * 8 6 5 10 10 H 1.09002 * 110.88695 * 31.39300 * 9 8 6 11 11 C 1.54911 * 111.00372 * 267.46803 * 9 8 6 12 12 N 1.47434 * 104.82953 * 204.91480 * 11 9 8 13 13 C 1.36932 * 125.64426 * 204.17606 * 12 11 9 14 14 H 1.08001 * 120.00258 * 354.82564 * 13 12 11 15 15 C 1.38817 * 119.99754 * 174.83074 * 13 12 11 16 16 N 1.31615 * 119.99869 * 7.35455 * 15 13 12 17 17 Si 1.86803 * 119.99839 * 187.36245 * 15 13 12 18 18 H 1.48496 * 109.47254 * 94.97981 * 17 15 13 19 19 H 1.48501 * 109.46619 * 214.98260 * 17 15 13 20 20 H 1.48504 * 109.47147 * 334.97780 * 17 15 13 21 21 C 1.47023 * 108.70400 * 24.13246 * 12 11 9 22 22 C 1.54322 * 107.27139 * 358.93913 * 21 12 11 23 23 H 1.08997 * 110.72188 * 96.16860 * 22 21 12 24 24 O 1.42899 * 110.87315 * 219.37633 * 22 21 12 25 25 C 1.34257 * 125.75156 * 179.97438 * 2 1 3 26 26 C 1.50697 * 126.29623 * 0.03254 * 25 2 1 27 27 C 1.53004 * 117.49965 * 313.94519 * 26 25 2 28 28 C 1.52997 * 117.50194 * 245.32020 * 26 25 2 29 29 H 1.09002 * 109.46769 * 273.79554 * 1 2 3 30 30 H 1.08995 * 109.47192 * 33.80079 * 1 2 3 31 31 H 1.09004 * 109.47173 * 153.80189 * 1 2 3 32 32 H 1.08001 * 125.98625 * 180.25823 * 4 3 2 33 33 H 0.96999 * 119.99876 * 359.97438 * 8 6 5 34 34 H 1.08997 * 110.36845 * 323.75590 * 11 9 8 35 35 H 1.09003 * 110.36455 * 86.08167 * 11 9 8 36 36 H 0.97000 * 120.00063 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.88085 * 239.52178 * 21 12 11 38 38 H 1.08998 * 110.00750 * 118.42221 * 21 12 11 39 39 H 0.96705 * 113.99814 * 293.61104 * 24 22 21 40 40 H 1.09001 * 115.54736 * 99.64370 * 26 25 2 41 41 H 1.09001 * 117.49296 * 359.97438 * 27 26 25 42 42 H 1.08992 * 117.50510 * 145.01534 * 27 26 25 43 43 H 1.08996 * 117.50013 * 214.97886 * 28 26 25 44 44 H 1.09001 * 117.49740 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2827 1.1357 0.0000 4 6 3.5311 0.7574 0.0057 5 6 3.5598 -0.6553 0.0006 6 6 4.7639 -1.5061 0.0017 7 8 4.6527 -2.7171 0.0026 8 7 5.9878 -0.9418 0.0019 9 6 7.1841 -1.7873 0.0091 10 1 7.0011 -2.7242 -0.5170 11 6 7.6709 -2.0482 1.4565 12 7 9.1105 -2.3375 1.3241 13 6 9.8636 -3.0616 2.2093 14 1 9.4269 -3.4048 3.1355 15 6 11.1885 -3.3544 1.9161 16 7 11.7633 -2.8172 0.8611 17 14 12.1554 -4.5112 3.0191 18 1 12.0981 -5.8875 2.4643 19 1 13.5696 -4.0634 3.0871 20 1 11.5672 -4.5022 4.3826 21 6 9.6032 -1.7207 0.0838 22 6 8.3992 -1.0369 -0.5976 23 1 8.3636 0.0227 -0.3445 24 8 8.4473 -1.2151 -2.0146 25 6 2.2495 -1.0896 0.0005 26 6 1.7850 -2.5232 0.0004 27 6 0.6708 -2.9049 0.9771 28 6 2.1057 -3.3698 1.2338 29 1 -0.3633 0.0680 1.0255 30 1 -0.3633 0.8539 -0.5717 31 1 -0.3634 -0.9221 -0.4537 32 1 4.3918 1.4097 0.0111 33 1 6.0765 0.0241 0.0009 34 1 7.5170 -1.1632 2.0738 35 1 7.1495 -2.9050 1.8834 36 1 12.6889 -3.0221 0.6560 37 1 10.0149 -2.4869 -0.5731 38 1 10.3687 -0.9798 0.3143 39 1 9.1889 -0.7657 -2.4426 40 1 1.7973 -3.0213 -0.9690 41 1 0.2742 -2.1190 1.6200 42 1 -0.0502 -3.6541 0.6504 43 1 2.3287 -4.4249 1.0758 44 1 2.6524 -2.8897 2.0455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078274721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:29 Heat of formation + Delta-G solvation = 54.603798 kcal Electronic energy + Delta-G solvation = -27185.624053 eV Core-core repulsion = 23334.794398 eV Total energy + Delta-G solvation = -3850.829655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67487 -39.19907 -37.60773 -37.19757 -35.00453 -33.93088 -33.45270 -31.64313 -30.35900 -28.50640 -27.51185 -26.61481 -24.49928 -23.63419 -22.76694 -22.12347 -20.76380 -20.46336 -19.97844 -19.39289 -17.74362 -16.98256 -16.70378 -16.33984 -15.70171 -15.60768 -15.12727 -14.69501 -14.64728 -14.32227 -14.15794 -13.94746 -13.71984 -13.11172 -12.94182 -12.86775 -12.62320 -12.36937 -12.18853 -11.97484 -11.70584 -11.44359 -11.35798 -11.20784 -10.87209 -10.80401 -10.78356 -10.44083 -10.12437 -9.83554 -9.82266 -9.63348 -9.57267 -9.23931 -8.82369 -8.64737 -8.48367 -6.87146 -5.74636 -3.07319 1.40166 2.09826 2.10804 3.41153 3.45814 3.47571 3.48688 3.55418 3.67082 4.14216 4.24998 4.48188 4.60887 4.68965 4.74963 4.77002 4.84074 4.95528 5.04644 5.15223 5.26983 5.32342 5.33507 5.46239 5.65124 5.67790 5.72980 5.76057 5.88604 5.89897 6.00455 6.15399 6.20998 6.26881 6.61448 6.62695 6.69848 7.00943 7.35057 7.37348 7.52558 7.75917 7.90130 8.17423 8.20974 8.62695 9.18076 9.78643 10.42573 11.37581 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.003028 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.285970 B = 9244.660124 C =10059.254768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.361 5.361 3 N -0.299 5.299 4 C 0.082 3.918 5 C -0.282 4.282 6 C 0.592 3.408 7 O -0.537 6.537 8 N -0.713 5.713 9 C 0.143 3.857 10 H 0.105 0.895 11 C 0.130 3.870 12 N -0.600 5.600 13 C -0.228 4.228 14 H 0.081 0.919 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 0.912 3.088 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.153 3.847 22 C 0.068 3.932 23 H 0.056 0.944 24 O -0.563 6.563 25 C 0.183 3.817 26 C -0.098 4.098 27 C -0.188 4.188 28 C -0.123 4.123 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.190 0.810 33 H 0.394 0.606 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.375 0.625 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.073 6.961 -3.362 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.140 5.140 3 N -0.119 5.119 4 C -0.106 4.106 5 C -0.297 4.297 6 C 0.379 3.621 7 O -0.415 6.415 8 N -0.363 5.363 9 C 0.037 3.963 10 H 0.123 0.877 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.357 4.357 14 H 0.099 0.901 15 C -0.203 4.203 16 N -0.569 5.569 17 Si 0.743 3.257 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.027 3.973 22 C 0.008 3.992 23 H 0.074 0.926 24 O -0.367 6.367 25 C 0.050 3.950 26 C -0.118 4.118 27 C -0.225 4.225 28 C -0.160 4.160 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.207 0.793 33 H 0.227 0.773 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.222 0.778 40 H 0.147 0.853 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.427 6.692 -3.232 24.578 hybrid contribution 1.765 -0.198 0.391 1.818 sum -21.662 6.494 -2.842 22.793 Atomic orbital electron populations 1.21989 0.73911 1.04786 1.03697 1.48299 1.06909 1.03252 1.55570 1.77175 1.01949 1.07216 1.25511 1.24040 0.95323 0.93958 0.97231 1.20069 0.93007 0.93375 1.23219 1.17125 0.81974 0.87060 0.75920 1.90771 1.86558 1.13790 1.50373 1.45664 1.05304 1.09760 1.75543 1.22202 0.81906 0.94637 0.97524 0.87661 1.21862 0.86536 0.98472 0.92853 1.44241 1.02751 1.62014 1.23781 1.19087 0.92577 1.25572 0.98414 0.90146 1.24828 0.96933 1.00371 0.98147 1.69938 1.12401 1.46177 1.28368 0.86090 0.79183 0.80870 0.79593 1.21515 1.21785 1.20568 1.21814 0.90928 0.96497 0.88042 1.23459 0.97219 0.97569 0.80951 0.92595 1.86479 1.52793 1.77726 1.19731 1.20541 0.89819 0.89034 0.95558 1.20427 1.04501 0.89036 0.97844 1.23210 0.92878 1.03940 1.02499 1.22801 0.95600 1.00330 0.97302 0.90457 0.89122 0.88868 0.79306 0.77273 0.95961 0.93148 0.93682 0.92059 0.93565 0.77804 0.85276 0.89013 0.87904 0.87581 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 10.15 59.85 0.61 1.21 16 2 N -0.36 -3.89 3.98 -63.34 -0.25 -4.14 16 3 N -0.30 -3.68 12.50 30.86 0.39 -3.29 16 4 C 0.08 0.96 11.50 -16.98 -0.20 0.77 16 5 C -0.28 -3.85 6.13 -105.06 -0.64 -4.50 16 6 C 0.59 9.62 7.81 -12.52 -0.10 9.52 16 7 O -0.54 -10.25 14.35 5.27 0.08 -10.17 16 8 N -0.71 -11.04 5.19 -52.79 -0.27 -11.32 16 9 C 0.14 2.73 3.14 -65.78 -0.21 2.52 16 10 H 0.11 2.32 7.54 -51.93 -0.39 1.93 16 11 C 0.13 2.81 6.93 -2.52 -0.02 2.79 16 12 N -0.60 -15.45 3.39 -170.07 -0.58 -16.03 16 13 C -0.23 -6.42 10.26 -15.06 -0.15 -6.58 16 14 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 15 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 16 N -0.92 -26.84 10.36 55.49 0.58 -26.27 16 17 Si 0.91 22.20 29.56 -169.99 -5.02 17.17 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.15 3.65 5.16 -3.06 -0.02 3.63 16 22 C 0.07 1.27 3.97 -24.89 -0.10 1.17 16 23 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 24 O -0.56 -9.91 13.40 -35.23 -0.47 -10.39 16 25 C 0.18 2.22 6.46 -81.61 -0.53 1.69 16 26 C -0.10 -1.03 4.79 -91.77 -0.44 -1.47 16 27 C -0.19 -1.44 8.96 -26.73 -0.24 -1.68 16 28 C -0.12 -1.32 9.00 -26.73 -0.24 -1.56 16 29 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.41 7.06 -51.93 -0.37 0.05 16 32 H 0.19 1.62 7.50 -52.49 -0.39 1.22 16 33 H 0.39 4.91 7.52 -40.82 -0.31 4.60 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.06 1.65 7.22 -51.93 -0.38 1.28 16 38 H 0.05 1.18 7.60 -51.93 -0.39 0.79 16 39 H 0.38 5.02 9.12 45.56 0.42 5.44 16 40 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.09 0.64 7.40 -51.93 -0.38 0.26 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -35.34 363.98 -7.98 -43.32 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.54 Total: 8.39 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.36 Total: 7.24 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.14 Total: -61.05 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.40 Total: -20.56 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.34 -7.98 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078274721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.920 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds