Wall clock time and date at job start Tue Mar 31 2020 04:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39935 * 125.75175 * 2 1 4 4 C 1.30446 * 108.89338 * 179.73427 * 3 2 1 5 5 C 1.41295 * 108.02285 * 0.38658 * 4 3 2 6 6 C 1.47435 * 126.41222 * 179.87505 * 5 4 3 7 7 O 1.21604 * 119.99930 * 179.68418 * 6 5 4 8 8 N 1.34775 * 120.00142 * 359.69249 * 6 5 4 9 9 C 1.46494 * 119.99937 * 179.72107 * 8 6 5 10 10 H 1.09002 * 110.88695 * 31.39300 * 9 8 6 11 11 C 1.54911 * 111.00372 * 267.46803 * 9 8 6 12 12 N 1.47434 * 104.82953 * 204.91480 * 11 9 8 13 13 C 1.36932 * 125.64426 * 204.17606 * 12 11 9 14 14 H 1.08001 * 120.00258 * 354.82564 * 13 12 11 15 15 C 1.38817 * 119.99754 * 174.83074 * 13 12 11 16 16 N 1.31615 * 119.99869 * 7.35455 * 15 13 12 17 17 Si 1.86803 * 119.99839 * 187.36245 * 15 13 12 18 18 H 1.48496 * 109.47254 * 94.97981 * 17 15 13 19 19 H 1.48501 * 109.46619 * 214.98260 * 17 15 13 20 20 H 1.48504 * 109.47147 * 334.97780 * 17 15 13 21 21 C 1.47023 * 108.70400 * 24.13246 * 12 11 9 22 22 C 1.54322 * 107.27139 * 358.93913 * 21 12 11 23 23 H 1.08997 * 110.72188 * 96.16860 * 22 21 12 24 24 O 1.42899 * 110.87315 * 219.37633 * 22 21 12 25 25 C 1.34257 * 125.75156 * 179.97438 * 2 1 3 26 26 C 1.50697 * 126.29623 * 0.03254 * 25 2 1 27 27 C 1.53004 * 117.49965 * 313.94519 * 26 25 2 28 28 C 1.52997 * 117.50194 * 245.32020 * 26 25 2 29 29 H 1.09002 * 109.46769 * 273.79554 * 1 2 3 30 30 H 1.08995 * 109.47192 * 33.80079 * 1 2 3 31 31 H 1.09004 * 109.47173 * 153.80189 * 1 2 3 32 32 H 1.08001 * 125.98625 * 180.25823 * 4 3 2 33 33 H 0.96999 * 119.99876 * 359.97438 * 8 6 5 34 34 H 1.08997 * 110.36845 * 323.75590 * 11 9 8 35 35 H 1.09003 * 110.36455 * 86.08167 * 11 9 8 36 36 H 0.97000 * 120.00063 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.88085 * 239.52178 * 21 12 11 38 38 H 1.08998 * 110.00750 * 118.42221 * 21 12 11 39 39 H 0.96705 * 113.99814 * 293.61104 * 24 22 21 40 40 H 1.09001 * 115.54736 * 99.64370 * 26 25 2 41 41 H 1.09001 * 117.49296 * 359.97438 * 27 26 25 42 42 H 1.08992 * 117.50510 * 145.01534 * 27 26 25 43 43 H 1.08996 * 117.50013 * 214.97886 * 28 26 25 44 44 H 1.09001 * 117.49740 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2827 1.1357 0.0000 4 6 3.5311 0.7574 0.0057 5 6 3.5598 -0.6553 0.0006 6 6 4.7639 -1.5061 0.0017 7 8 4.6527 -2.7171 0.0026 8 7 5.9878 -0.9418 0.0019 9 6 7.1841 -1.7873 0.0091 10 1 7.0011 -2.7242 -0.5170 11 6 7.6709 -2.0482 1.4565 12 7 9.1105 -2.3375 1.3241 13 6 9.8636 -3.0616 2.2093 14 1 9.4269 -3.4048 3.1355 15 6 11.1885 -3.3544 1.9161 16 7 11.7633 -2.8172 0.8611 17 14 12.1554 -4.5112 3.0191 18 1 12.0981 -5.8875 2.4643 19 1 13.5696 -4.0634 3.0871 20 1 11.5672 -4.5022 4.3826 21 6 9.6032 -1.7207 0.0838 22 6 8.3992 -1.0369 -0.5976 23 1 8.3636 0.0227 -0.3445 24 8 8.4473 -1.2151 -2.0146 25 6 2.2495 -1.0896 0.0005 26 6 1.7850 -2.5232 0.0004 27 6 0.6708 -2.9049 0.9771 28 6 2.1057 -3.3698 1.2338 29 1 -0.3633 0.0680 1.0255 30 1 -0.3633 0.8539 -0.5717 31 1 -0.3634 -0.9221 -0.4537 32 1 4.3918 1.4097 0.0111 33 1 6.0765 0.0241 0.0009 34 1 7.5170 -1.1632 2.0738 35 1 7.1495 -2.9050 1.8834 36 1 12.6889 -3.0221 0.6560 37 1 10.0149 -2.4869 -0.5731 38 1 10.3687 -0.9798 0.3143 39 1 9.1889 -0.7657 -2.4426 40 1 1.7973 -3.0213 -0.9690 41 1 0.2742 -2.1190 1.6200 42 1 -0.0502 -3.6541 0.6504 43 1 2.3287 -4.4249 1.0758 44 1 2.6524 -2.8897 2.0455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078274721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:28 Heat of formation + Delta-G solvation = 27.015202 kcal Electronic energy + Delta-G solvation = -27186.820384 eV Core-core repulsion = 23334.794398 eV Total energy + Delta-G solvation = -3852.025986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.56685 -40.62874 -39.12247 -37.98847 -36.65057 -35.44083 -34.32053 -33.50232 -31.35088 -30.18579 -28.93600 -27.80536 -26.29022 -24.64804 -23.55141 -23.12475 -22.29723 -22.00999 -21.27318 -20.40532 -19.10285 -18.64544 -18.13560 -17.27458 -17.22931 -16.61585 -16.46966 -15.96446 -15.77490 -15.54001 -15.50163 -15.33682 -14.77437 -14.52721 -14.44449 -14.17953 -13.69378 -13.59504 -13.47217 -13.15019 -13.08222 -13.03355 -12.75011 -12.71189 -12.41025 -12.25213 -12.06281 -11.88052 -11.56989 -11.49765 -11.22508 -11.04286 -10.74627 -10.71736 -10.38152 -10.11126 -9.60532 -8.94601 -7.88929 -5.24300 0.46228 1.14548 1.35673 1.45956 1.48879 1.57084 2.21247 2.46671 2.51245 2.75463 3.16894 3.31725 3.37296 3.49424 3.59911 3.89486 3.90291 3.95307 4.04083 4.11312 4.18629 4.23144 4.29051 4.39232 4.48226 4.53072 4.60423 4.64934 4.74128 4.80458 4.86681 4.99343 5.09299 5.09869 5.21238 5.36356 5.38711 5.47744 5.56022 5.67936 5.84109 6.14917 6.48020 6.70319 6.89668 7.05852 7.38671 7.70762 8.33985 9.21406 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.003028 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.285970 B = 9244.660124 C =10059.254768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.355 5.355 3 N -0.316 5.316 4 C 0.086 3.914 5 C -0.311 4.311 6 C 0.591 3.409 7 O -0.573 6.573 8 N -0.700 5.700 9 C 0.159 3.841 10 H 0.072 0.928 11 C 0.132 3.868 12 N -0.622 5.622 13 C -0.248 4.248 14 H 0.081 0.919 15 C -0.060 4.060 16 N -0.946 5.946 17 Si 0.978 3.022 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.267 1.267 21 C 0.161 3.839 22 C 0.091 3.909 23 H 0.094 0.906 24 O -0.569 6.569 25 C 0.184 3.816 26 C -0.112 4.112 27 C -0.147 4.147 28 C -0.147 4.147 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.217 0.783 33 H 0.412 0.588 34 H 0.041 0.959 35 H 0.034 0.966 36 H 0.249 0.751 37 H 0.021 0.979 38 H 0.025 0.975 39 H 0.395 0.605 40 H 0.129 0.871 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.099 0.901 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.405 8.212 -3.171 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.133 5.133 3 N -0.136 5.136 4 C -0.101 4.101 5 C -0.326 4.326 6 C 0.380 3.620 7 O -0.453 6.453 8 N -0.352 5.352 9 C 0.052 3.948 10 H 0.091 0.909 11 C 0.005 3.995 12 N -0.349 5.349 13 C -0.377 4.377 14 H 0.099 0.901 15 C -0.254 4.254 16 N -0.594 5.594 17 Si 0.806 3.194 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.192 1.192 21 C 0.035 3.965 22 C 0.030 3.970 23 H 0.112 0.888 24 O -0.377 6.377 25 C 0.050 3.950 26 C -0.131 4.131 27 C -0.183 4.183 28 C -0.185 4.185 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.233 0.767 33 H 0.249 0.751 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.245 0.755 40 H 0.146 0.854 41 H 0.123 0.877 42 H 0.148 0.852 43 H 0.118 0.882 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.808 8.006 -3.048 27.193 hybrid contribution 2.396 -0.592 0.319 2.489 sum -23.412 7.414 -2.730 24.709 Atomic orbital electron populations 1.22425 0.71301 1.06467 1.05331 1.48647 1.08311 1.02343 1.54030 1.77143 1.02256 1.08098 1.26067 1.24439 0.96130 0.93339 0.96166 1.19945 0.92512 0.94087 1.26031 1.17527 0.82659 0.86929 0.74885 1.90752 1.87052 1.15518 1.51993 1.45402 1.04018 1.10294 1.75471 1.21661 0.83486 0.94209 0.95411 0.90934 1.21934 0.84414 0.98370 0.94740 1.44509 1.04418 1.62070 1.23945 1.19439 0.93212 1.25939 0.99073 0.90069 1.25655 0.97959 1.01911 0.99841 1.70134 1.12324 1.47130 1.29835 0.85071 0.77553 0.78376 0.78407 1.21634 1.21679 1.19207 1.21619 0.92759 0.94957 0.87176 1.23161 0.94022 0.98673 0.81113 0.88824 1.86445 1.53906 1.78441 1.18863 1.20767 0.89791 0.90040 0.94445 1.20475 1.06633 0.88143 0.97898 1.23314 0.91348 1.03756 0.99920 1.22716 0.98672 0.99917 0.97171 0.88710 0.87960 0.86877 0.76673 0.75123 0.94148 0.94749 0.94140 0.96043 0.95732 0.75469 0.85363 0.87721 0.85235 0.88212 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.15 127.77 1.30 2.06 16 2 N -0.36 -6.81 3.98 -354.30 -1.41 -8.22 16 3 N -0.32 -7.08 12.50 -56.27 -0.70 -7.78 16 4 C 0.09 1.86 11.50 85.65 0.99 2.85 16 5 C -0.31 -8.20 6.13 -20.15 -0.12 -8.32 16 6 C 0.59 19.15 7.81 86.67 0.68 19.83 16 7 O -0.57 -22.52 14.35 -4.04 -0.06 -22.58 16 8 N -0.70 -21.08 5.19 -439.20 -2.28 -23.36 16 9 C 0.16 6.11 3.14 46.39 0.15 6.25 16 10 H 0.07 3.31 7.54 -2.39 -0.02 3.29 16 11 C 0.13 5.77 6.93 86.85 0.60 6.37 16 12 N -0.62 -32.80 3.39 -691.97 -2.35 -35.14 16 13 C -0.25 -14.25 10.26 84.04 0.86 -13.38 16 14 H 0.08 4.51 7.84 -2.91 -0.02 4.48 16 15 C -0.06 -3.46 5.48 84.86 0.46 -2.99 16 16 N -0.95 -56.61 10.36 21.65 0.22 -56.38 16 17 Si 0.98 46.29 29.56 68.60 2.03 48.32 16 18 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 C 0.16 7.86 5.16 86.73 0.45 8.31 16 22 C 0.09 3.31 3.97 31.79 0.13 3.43 16 23 H 0.09 2.78 8.00 -2.39 -0.02 2.77 16 24 O -0.57 -19.46 13.40 -148.98 -2.00 -21.46 16 25 C 0.18 4.22 6.46 42.14 0.27 4.50 16 26 C -0.11 -2.22 4.79 -11.54 -0.06 -2.28 16 27 C -0.15 -1.85 8.96 30.60 0.27 -1.58 16 28 C -0.15 -3.16 9.00 30.59 0.28 -2.88 16 29 H 0.09 0.58 8.06 -2.39 -0.02 0.56 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.58 7.06 -2.39 -0.02 0.57 16 32 H 0.22 3.09 7.50 -2.91 -0.02 3.07 16 33 H 0.41 9.34 7.52 -92.71 -0.70 8.64 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.02 1.20 7.22 -2.39 -0.02 1.19 16 38 H 0.02 1.29 7.60 -2.39 -0.02 1.27 16 39 H 0.40 10.00 9.12 -74.05 -0.68 9.33 16 40 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.10 1.09 7.40 -2.39 -0.02 1.07 16 42 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.56 363.98 -0.62 -80.18 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.33 Total: 24.26 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 6.25 Total: 22.16 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -6.52 Total: -130.89 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -2.05 Total: -44.03 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -79.56 -0.62 -80.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078274721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.195 kcal (2) G-P(sol) polarization free energy of solvation -79.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds