Wall clock time and date at job start Tue Mar 31 2020 04:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36339 * 126.20139 * 2 1 4 4 C 1.36246 * 106.88790 * 179.84763 * 3 2 1 5 5 C 1.47255 * 126.16472 * 180.15874 * 4 3 2 6 6 O 1.21629 * 119.99728 * 0.28326 * 5 4 3 7 7 N 1.34768 * 119.99775 * 180.28951 * 5 4 3 8 8 C 1.46509 * 119.99946 * 179.97438 * 7 5 4 9 9 H 1.08993 * 112.88281 * 26.83853 * 8 7 5 10 10 C 1.53948 * 113.66006 * 255.48978 * 8 7 5 11 11 C 1.53950 * 87.29575 * 270.26172 * 10 8 7 12 12 H 1.08994 * 113.66384 * 220.79691 * 11 10 8 13 13 N 1.46501 * 113.66220 * 89.83275 * 11 10 8 14 14 C 1.36936 * 119.99869 * 104.50267 * 13 11 10 15 15 H 1.07998 * 119.99929 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99820 * 180.02562 * 14 13 11 17 17 N 1.31614 * 120.00025 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46963 * 89.99689 * 18 16 14 20 20 H 1.48497 * 109.47098 * 209.99750 * 18 16 14 21 21 H 1.48494 * 109.46967 * 329.99876 * 18 16 14 22 22 C 1.52906 * 86.78326 * 335.26830 * 11 10 8 23 23 C 1.52911 * 121.13809 * 150.62545 * 22 11 10 24 24 C 1.53950 * 86.78272 * 100.81301 * 23 22 11 25 25 C 1.52907 * 121.13368 * 259.18110 * 22 11 10 26 26 N 1.36032 * 107.66711 * 0.41748 * 4 3 2 27 27 C 1.30698 * 108.94787 * 359.73905 * 26 4 3 28 28 O 1.35456 * 125.55294 * 179.97438 * 27 26 4 29 29 H 1.09001 * 109.47060 * 269.71585 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.71074 * 1 2 3 31 31 H 1.09000 * 109.47212 * 149.71157 * 1 2 3 32 32 H 1.08003 * 126.55633 * 0.02562 * 3 2 1 33 33 H 0.97000 * 120.00241 * 359.97438 * 7 5 4 34 34 H 1.09000 * 113.57942 * 24.87226 * 10 8 7 35 35 H 1.09004 * 113.57539 * 155.65969 * 10 8 7 36 36 H 0.97000 * 119.99721 * 284.50150 * 13 11 10 37 37 H 0.96998 * 120.00381 * 180.02562 * 17 16 14 38 38 H 1.08995 * 113.66304 * 215.28586 * 23 22 11 39 39 H 1.08997 * 113.66216 * 346.33748 * 23 22 11 40 40 H 1.09002 * 113.57964 * 270.13024 * 24 23 22 41 41 H 1.08997 * 113.58218 * 139.34042 * 24 23 22 42 42 H 1.08996 * 113.66644 * 13.65864 * 25 22 11 43 43 H 1.09005 * 113.66631 * 144.71442 * 25 22 11 44 44 H 0.96701 * 113.99417 * 270.01786 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2703 1.1002 0.0000 4 6 3.5561 0.6496 0.0035 5 6 4.7693 1.4841 0.0081 6 8 4.6734 2.6966 0.0142 7 7 5.9859 0.9043 0.0053 8 6 7.1931 1.7346 0.0093 9 1 7.0345 2.7108 0.4673 10 6 7.9023 1.8002 -1.3555 11 6 8.7076 0.5644 -0.9145 12 1 9.7604 0.6059 -1.1936 13 7 8.0737 -0.7078 -1.2693 14 6 8.5590 -1.4462 -2.3155 15 1 9.4092 -1.0908 -2.8787 16 6 7.9580 -2.6514 -2.6520 17 7 6.9222 -3.0846 -1.9653 18 14 8.6204 -3.6590 -4.0787 19 1 9.6566 -4.5995 -3.5815 20 1 7.5113 -4.4273 -4.6991 21 1 9.2199 -2.7513 -5.0895 22 6 8.4361 1.0077 0.5235 23 6 8.3431 -0.0105 1.6606 24 6 9.7839 0.3926 2.0233 25 6 9.5009 1.7422 1.3388 26 7 3.5170 -0.7102 -0.0039 27 6 2.2692 -1.0989 -0.0060 28 8 1.8450 -2.3853 -0.0135 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 0.8926 -0.5094 31 1 -0.3634 -0.8874 -0.5183 32 1 1.9502 2.1317 0.0004 33 1 6.0624 -0.0626 0.0006 34 1 7.2403 1.6106 -2.2005 35 1 8.5123 2.6939 -1.4873 36 1 7.3103 -1.0270 -0.7631 37 1 6.5025 -3.9269 -2.2002 38 1 7.6103 0.2516 2.4236 39 1 8.2502 -1.0412 1.3183 40 1 10.5438 -0.2024 1.5166 41 1 9.9565 0.4756 3.0963 42 1 10.3330 2.1119 0.7396 43 1 9.0935 2.4970 2.0116 44 1 1.7220 -2.7536 -0.8991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078721113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:28 Heat of formation + Delta-G solvation = 57.326789 kcal Electronic energy + Delta-G solvation = -27782.686929 eV Core-core repulsion = 23931.975352 eV Total energy + Delta-G solvation = -3850.711577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08531 -40.41302 -38.39043 -37.16819 -35.10462 -34.21211 -33.47837 -31.98642 -29.77910 -29.01406 -27.37995 -25.36188 -24.68933 -24.04492 -23.33293 -21.90722 -21.32147 -20.26540 -19.66980 -18.67089 -17.90999 -17.10146 -16.89897 -16.26784 -15.72782 -15.51243 -15.04789 -14.69197 -14.49810 -14.40029 -14.27158 -14.04119 -13.72884 -13.11871 -12.98147 -12.79589 -12.68328 -12.33673 -11.98993 -11.87668 -11.76027 -11.40652 -11.23354 -10.85111 -10.77449 -10.58849 -10.13950 -10.11775 -9.96455 -9.77869 -9.76321 -9.59245 -9.46366 -9.29717 -8.77953 -8.52905 -8.22889 -6.93225 -5.72276 -3.02355 1.60808 2.21705 2.45978 3.45018 3.48216 3.50919 3.52054 3.83042 3.96186 4.46572 4.58166 4.66032 4.82714 4.88744 5.08647 5.08977 5.11527 5.23341 5.28702 5.43192 5.51214 5.54376 5.78239 5.88046 5.97157 6.00689 6.07737 6.11628 6.14017 6.25260 6.33978 6.42516 6.48604 6.51665 6.65257 6.75179 6.81660 6.91852 7.07591 7.25190 7.55116 7.75234 7.77480 8.19125 8.44527 8.73189 9.55221 10.11588 10.45505 11.48511 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009148 B = 0.005255 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.108683 B = 5327.464362 C = 7451.469428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.468 5.468 3 C 0.034 3.966 4 C -0.041 4.041 5 C 0.605 3.395 6 O -0.558 6.558 7 N -0.680 5.680 8 C 0.138 3.862 9 H 0.090 0.910 10 C -0.186 4.186 11 C 0.191 3.809 12 H 0.063 0.937 13 N -0.699 5.699 14 C -0.244 4.244 15 H 0.071 0.929 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.283 1.283 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.106 4.106 26 N -0.432 5.432 27 C 0.376 3.624 28 O -0.439 6.439 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.193 0.807 33 H 0.417 0.583 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.336 7.658 6.198 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.163 5.163 3 C -0.103 4.103 4 C -0.171 4.171 5 C 0.391 3.609 6 O -0.438 6.438 7 N -0.330 5.330 8 C 0.032 3.968 9 H 0.108 0.892 10 C -0.228 4.228 11 C 0.079 3.921 12 H 0.081 0.919 13 N -0.339 5.339 14 C -0.375 4.375 15 H 0.089 0.911 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.130 4.130 23 C -0.164 4.164 24 C -0.172 4.172 25 C -0.144 4.144 26 N -0.161 5.161 27 C 0.075 3.925 28 O -0.240 6.240 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.210 0.790 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.763 7.748 6.645 14.124 hybrid contribution -0.932 -0.916 -1.258 1.814 sum -10.695 6.832 5.387 13.787 Atomic orbital electron populations 1.22058 0.76230 1.04745 1.03961 1.45867 1.08093 1.06654 1.55706 1.22538 0.89804 0.92224 1.05771 1.20491 0.93483 0.89757 1.13325 1.16784 0.82049 0.86148 0.75947 1.90741 1.86996 1.13264 1.52764 1.45541 1.03995 1.11542 1.71921 1.21641 0.83201 0.93999 0.97929 0.89215 1.24288 1.00604 1.00730 0.97182 1.20857 0.95595 0.86458 0.89192 0.91853 1.42133 1.36141 1.18608 1.37058 1.19216 1.11149 1.00371 1.06775 0.91063 1.24741 0.98185 0.98106 0.99477 1.69674 1.23393 1.22123 1.41700 0.86227 0.77687 0.80249 0.82206 1.21765 1.21938 1.20845 1.23520 0.95481 0.97622 0.96414 1.22576 0.96240 1.00476 0.97137 1.22752 0.97861 0.97100 0.99448 1.22507 0.97485 0.96442 0.97937 1.71101 1.16384 1.10632 1.17940 1.20369 0.84022 0.81477 1.06613 1.84874 1.86629 1.18225 1.34223 0.90218 0.89248 0.89391 0.79000 0.74387 0.90970 0.90546 0.78085 0.93517 0.90929 0.90150 0.90105 0.92245 0.91380 0.90330 0.74039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 11.11 59.85 0.66 1.13 16 2 N -0.47 -5.54 3.16 -125.77 -0.40 -5.93 16 3 C 0.03 0.46 11.29 -16.27 -0.18 0.27 16 4 C -0.04 -0.73 6.97 -83.06 -0.58 -1.31 16 5 C 0.60 11.84 7.81 -12.60 -0.10 11.74 16 6 O -0.56 -11.47 16.52 5.25 0.09 -11.38 16 7 N -0.68 -13.44 4.92 -54.50 -0.27 -13.71 16 8 C 0.14 2.52 4.08 -67.48 -0.28 2.25 16 9 H 0.09 1.61 7.54 -51.93 -0.39 1.22 16 10 C -0.19 -3.53 7.68 -25.75 -0.20 -3.73 16 11 C 0.19 3.89 4.35 -67.48 -0.29 3.59 16 12 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 13 N -0.70 -17.29 4.77 -52.99 -0.25 -17.54 16 14 C -0.24 -6.70 9.98 -15.06 -0.15 -6.85 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 17 N -0.92 -27.25 13.06 55.49 0.72 -26.52 16 18 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 C -0.13 -2.20 0.77 -154.71 -0.12 -2.32 16 23 C -0.13 -2.16 7.18 -26.28 -0.19 -2.35 16 24 C -0.13 -1.95 8.08 -25.75 -0.21 -2.16 16 25 C -0.11 -1.48 7.84 -26.28 -0.21 -1.69 16 26 N -0.43 -8.19 11.03 -11.22 -0.12 -8.31 16 27 C 0.38 5.72 9.03 -89.17 -0.81 4.91 16 28 O -0.44 -5.63 13.55 -18.06 -0.24 -5.87 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.44 8.13 -51.93 -0.42 0.01 16 32 H 0.19 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.42 9.03 5.90 -40.82 -0.24 8.79 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.38 9.98 5.13 -40.82 -0.21 9.77 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.60 7.51 -51.93 -0.39 1.21 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.40 3.33 9.06 45.56 0.41 3.74 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -34.61 368.42 -8.12 -42.73 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -5.44 Total: 20.58 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.74 Total: 3.15 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -0.32 Total: -72.02 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.16 Total: -17.26 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.61 -8.12 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078721113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.061 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds