Wall clock time and date at job start Tue Mar 31 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99929 * 2 1 4 4 C 1.53003 * 109.47275 * 84.21303 * 3 2 1 5 5 H 1.09003 * 112.96345 * 293.44170 * 4 3 2 6 6 C 1.53942 * 113.76851 * 65.11945 * 4 3 2 7 7 C 1.53942 * 86.28669 * 137.90968 * 6 4 3 8 8 N 1.47578 * 113.76957 * 161.76580 * 4 3 2 9 9 C 1.36938 * 134.49419 * 41.06400 * 8 4 3 10 10 H 1.08005 * 119.99857 * 4.60282 * 9 8 4 11 11 C 1.38814 * 119.99939 * 184.60455 * 9 8 4 12 12 N 1.31618 * 119.99953 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99934 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46926 * 89.99693 * 13 11 9 15 15 H 1.48501 * 109.47378 * 209.99828 * 13 11 9 16 16 H 1.48502 * 109.47058 * 330.00154 * 13 11 9 17 17 C 1.34774 * 120.00459 * 179.97438 * 2 1 3 18 18 O 1.21662 * 120.00489 * 179.59197 * 17 2 1 19 19 C 1.46930 * 119.99497 * 359.59530 * 17 2 1 20 20 C 1.41692 * 126.56076 * 349.84370 * 19 17 2 21 21 N 1.30563 * 108.19239 * 179.86075 * 20 19 17 22 22 N 1.39350 * 109.06346 * 0.34858 * 21 20 19 23 23 C 1.35163 * 108.46177 * 359.83998 * 22 21 20 24 24 O 1.35461 * 123.86912 * 179.82486 * 23 22 21 25 25 C 1.43534 * 115.05899 * 344.51977 * 24 23 22 26 26 C 1.53255 * 109.17949 * 46.89964 * 25 24 23 27 27 C 1.46797 * 127.98074 * 179.97438 * 22 21 20 28 28 H 1.09000 * 109.46889 * 263.70374 * 1 2 3 29 29 H 1.08997 * 109.46895 * 143.70797 * 1 2 3 30 30 H 1.08997 * 109.47377 * 23.70280 * 1 2 3 31 31 H 1.09006 * 109.47080 * 204.20980 * 3 2 1 32 32 H 1.08994 * 109.47064 * 324.20808 * 3 2 1 33 33 H 1.09005 * 113.73895 * 252.25240 * 6 4 3 34 34 H 1.09001 * 113.74566 * 23.45738 * 6 4 3 35 35 H 1.09004 * 113.77075 * 90.69546 * 7 6 4 36 36 H 1.09003 * 113.77281 * 221.97341 * 7 6 4 37 37 H 0.96998 * 119.99695 * 179.97438 * 12 11 9 38 38 H 1.07997 * 125.90600 * 0.02562 * 20 19 17 39 39 H 1.08997 * 109.52524 * 286.99300 * 25 24 23 40 40 H 1.08994 * 109.56476 * 166.83851 * 25 24 23 41 41 H 1.09005 * 109.51165 * 175.94195 * 26 25 24 42 42 H 1.09007 * 109.55004 * 55.82759 * 26 25 24 43 43 H 1.09006 * 109.75543 * 282.50511 * 27 22 21 44 44 H 1.08996 * 109.75583 * 43.21036 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3266 1.7832 1.4352 5 1 1.3692 2.0650 1.8736 6 6 3.1835 0.8821 2.3426 7 6 3.7944 2.1847 2.8902 8 7 3.3829 2.7988 1.6103 9 6 3.8095 3.8756 0.8797 10 1 3.2791 4.1652 -0.0154 11 6 4.9236 4.5950 1.2897 12 7 5.5697 4.2424 2.3809 13 14 5.5060 6.0635 0.2928 14 1 4.8377 7.2939 0.7875 15 1 6.9770 6.2072 0.4363 16 1 5.1660 5.8566 -1.1379 17 6 2.1390 -1.1671 0.0005 18 8 3.3556 -1.1672 -0.0070 19 6 1.4043 -2.4395 0.0101 20 6 0.0134 -2.6095 0.2200 21 7 -0.2563 -3.8851 0.1512 22 7 0.9224 -4.5871 -0.0931 23 6 1.9389 -3.7003 -0.1778 24 8 3.2279 -4.0489 -0.4061 25 6 3.5245 -5.4400 -0.2138 26 6 2.4546 -6.2845 -0.9143 27 6 1.0955 -6.0368 -0.2453 28 1 -0.3633 -0.1127 1.0215 29 1 -0.3633 -0.8283 -0.6083 30 1 -0.3634 0.9409 -0.4131 31 1 3.1909 1.1148 -0.4214 32 1 1.6573 2.0002 -0.6010 33 1 2.6052 0.3248 3.0797 34 1 3.8921 0.2579 1.7982 35 1 3.2691 2.5859 3.7569 36 1 4.8742 2.1381 3.0315 37 1 6.3484 4.7449 2.6671 38 1 -0.7007 -1.8202 0.4024 39 1 3.5280 -5.6678 0.8521 40 1 4.5027 -5.6666 -0.6379 41 1 2.7134 -7.3403 -0.8332 42 1 2.3986 -6.0032 -1.9659 43 1 1.0746 -6.5152 0.7339 44 1 0.2977 -6.4396 -0.8693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085697721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:26 Heat of formation + Delta-G solvation = 97.287274 kcal Electronic energy + Delta-G solvation = -27584.572024 eV Core-core repulsion = 23735.593264 eV Total energy + Delta-G solvation = -3848.978760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11348 -39.48021 -38.67764 -37.38392 -35.07053 -34.94337 -32.04528 -31.31447 -30.12634 -28.26858 -27.67276 -26.67352 -26.41150 -24.06524 -23.12894 -22.45744 -21.77497 -20.19722 -19.60550 -18.80308 -17.74766 -17.20818 -16.75897 -16.42184 -15.95377 -15.42235 -15.22436 -15.15854 -14.94579 -14.61804 -14.45786 -14.05844 -13.82170 -13.39209 -13.28094 -12.86433 -12.70129 -12.24643 -12.13357 -12.11059 -11.88478 -11.58816 -11.37473 -11.26049 -10.97214 -10.89091 -10.68540 -10.52443 -10.31856 -9.68850 -9.55380 -9.50158 -9.39998 -9.27345 -8.62695 -8.54350 -8.08400 -6.69721 -5.60624 -2.93345 1.45231 1.86183 2.10093 2.74293 3.35848 3.48166 3.52711 3.55052 3.71038 3.73332 3.93156 4.30387 4.35026 4.58681 4.66353 4.71894 4.82508 4.98838 5.01347 5.11066 5.18923 5.25313 5.35284 5.40673 5.50789 5.60497 5.72891 5.77773 5.83222 6.05834 6.15261 6.24626 6.32026 6.57942 6.75191 6.93606 6.95257 6.99222 7.02883 7.35337 7.44673 7.67808 7.79076 7.86001 8.15560 8.72446 9.19090 9.86392 10.78540 11.55757 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.003031 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.862651 B = 9237.028665 C = 9709.550179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.606 5.606 3 C 0.119 3.881 4 C 0.129 3.871 5 H 0.041 0.959 6 C -0.156 4.156 7 C 0.155 3.845 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.077 0.923 11 C -0.009 4.009 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.291 1.291 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.593 3.407 18 O -0.529 6.529 19 C -0.297 4.297 20 C 0.082 3.918 21 N -0.290 5.290 22 N -0.401 5.401 23 C 0.335 3.665 24 O -0.261 6.261 25 C 0.043 3.957 26 C -0.178 4.178 27 C 0.128 3.872 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.020 0.980 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.215 0.785 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 -23.898 -5.608 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.340 5.340 3 C -0.004 4.004 4 C 0.021 3.979 5 H 0.058 0.942 6 C -0.194 4.194 7 C 0.030 3.970 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.095 0.905 11 C -0.205 4.205 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.218 1.218 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.382 3.618 18 O -0.406 6.406 19 C -0.312 4.312 20 C -0.106 4.106 21 N -0.112 5.112 22 N -0.195 5.195 23 C 0.162 3.838 24 O -0.165 6.165 25 C -0.032 4.032 26 C -0.216 4.216 27 C 0.008 3.992 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.231 0.769 39 H 0.094 0.906 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.999 -24.513 -5.717 27.884 hybrid contribution 0.665 1.264 -0.406 1.485 sum -11.334 -23.249 -6.124 26.579 Atomic orbital electron populations 1.22343 0.80998 1.03260 1.01359 1.47487 1.06201 1.06138 1.74139 1.21823 0.97891 0.82141 0.98536 1.22529 0.92858 0.89311 0.93194 0.94206 1.23776 0.99520 0.97470 0.98617 1.22297 1.00044 0.86749 0.87895 1.45951 1.35149 1.30495 1.21122 1.18985 1.07823 1.03286 1.04535 0.90488 1.24766 0.97987 0.99793 0.97988 1.69835 1.21240 1.41412 1.24221 0.86160 0.77879 0.82567 0.79407 1.21834 1.21739 1.20656 1.16880 0.86499 0.82024 0.76419 1.90830 1.12941 1.86815 1.49999 1.19203 0.94119 0.91478 1.26397 1.25059 0.94686 0.94229 0.96581 1.77072 1.03194 1.05495 1.25470 1.48997 1.05010 1.06867 1.58646 1.19728 0.80639 0.89788 0.93601 1.86773 1.19435 1.26990 1.83309 1.23243 1.00058 0.78380 1.01548 1.22683 0.93813 1.03300 1.01823 1.21968 0.98747 0.75628 1.02867 0.92353 0.90440 0.90807 0.88818 0.91619 0.94160 0.89510 0.96218 0.90648 0.93838 0.76905 0.90567 0.85833 0.86958 0.89137 0.89077 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 8.74 59.85 0.52 1.21 16 2 N -0.61 -9.75 2.79 -183.03 -0.51 -10.26 16 3 C 0.12 2.32 5.43 -4.04 -0.02 2.29 16 4 C 0.13 2.81 4.57 -66.87 -0.31 2.51 16 5 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 6 C -0.16 -3.46 7.27 -25.80 -0.19 -3.65 16 7 C 0.16 4.02 7.64 -2.85 -0.02 4.00 16 8 N -0.60 -16.24 3.58 -169.72 -0.61 -16.85 16 9 C -0.22 -6.34 10.51 -15.06 -0.16 -6.50 16 10 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 12 N -0.92 -28.57 11.32 55.49 0.63 -27.94 16 13 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.59 10.65 7.23 -12.74 -0.09 10.56 16 18 O -0.53 -11.72 14.55 3.93 0.06 -11.67 16 19 C -0.30 -4.43 5.95 -105.07 -0.63 -5.05 16 20 C 0.08 0.96 9.86 -16.77 -0.17 0.79 16 21 N -0.29 -3.49 12.54 30.97 0.39 -3.11 16 22 N -0.40 -4.46 4.04 -60.47 -0.24 -4.70 16 23 C 0.34 4.64 7.50 -16.09 -0.12 4.52 16 24 O -0.26 -3.52 10.22 -19.37 -0.20 -3.72 16 25 C 0.04 0.31 7.02 37.29 0.26 0.57 16 26 C -0.18 -0.81 6.16 -26.35 -0.16 -0.97 16 27 C 0.13 0.79 7.41 -3.63 -0.03 0.76 16 28 H 0.06 0.55 7.58 -51.93 -0.39 0.15 16 29 H 0.08 0.69 4.92 -51.93 -0.26 0.43 16 30 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 31 H 0.09 2.15 7.25 -51.93 -0.38 1.77 16 32 H 0.07 1.18 7.95 -51.93 -0.41 0.76 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 2.10 6.61 -51.93 -0.34 1.76 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 2.15 6.98 -51.93 -0.36 1.79 16 37 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.22 1.80 4.53 -52.49 -0.24 1.56 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -38.69 353.84 -7.52 -46.21 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.14 Total: -1.93 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -1.20 Total: 10.68 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.35 Total: -62.86 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.14 Total: -15.38 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.69 -7.52 -46.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085697721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.501 kcal (2) G-P(sol) polarization free energy of solvation -38.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds