Wall clock time and date at job start Tue Mar 31 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99929 * 2 1 4 4 C 1.53003 * 109.47275 * 84.21303 * 3 2 1 5 5 H 1.09003 * 112.96345 * 293.44170 * 4 3 2 6 6 C 1.53942 * 113.76851 * 65.11945 * 4 3 2 7 7 C 1.53942 * 86.28669 * 137.90968 * 6 4 3 8 8 N 1.47578 * 113.76957 * 161.76580 * 4 3 2 9 9 C 1.36938 * 134.49419 * 41.06400 * 8 4 3 10 10 H 1.08005 * 119.99857 * 4.60282 * 9 8 4 11 11 C 1.38814 * 119.99939 * 184.60455 * 9 8 4 12 12 N 1.31618 * 119.99953 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99934 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46926 * 89.99693 * 13 11 9 15 15 H 1.48501 * 109.47378 * 209.99828 * 13 11 9 16 16 H 1.48502 * 109.47058 * 330.00154 * 13 11 9 17 17 C 1.34774 * 120.00459 * 179.97438 * 2 1 3 18 18 O 1.21662 * 120.00489 * 179.59197 * 17 2 1 19 19 C 1.46930 * 119.99497 * 359.59530 * 17 2 1 20 20 C 1.41692 * 126.56076 * 349.84370 * 19 17 2 21 21 N 1.30563 * 108.19239 * 179.86075 * 20 19 17 22 22 N 1.39350 * 109.06346 * 0.34858 * 21 20 19 23 23 C 1.35163 * 108.46177 * 359.83998 * 22 21 20 24 24 O 1.35461 * 123.86912 * 179.82486 * 23 22 21 25 25 C 1.43534 * 115.05899 * 344.51977 * 24 23 22 26 26 C 1.53255 * 109.17949 * 46.89964 * 25 24 23 27 27 C 1.46797 * 127.98074 * 179.97438 * 22 21 20 28 28 H 1.09000 * 109.46889 * 263.70374 * 1 2 3 29 29 H 1.08997 * 109.46895 * 143.70797 * 1 2 3 30 30 H 1.08997 * 109.47377 * 23.70280 * 1 2 3 31 31 H 1.09006 * 109.47080 * 204.20980 * 3 2 1 32 32 H 1.08994 * 109.47064 * 324.20808 * 3 2 1 33 33 H 1.09005 * 113.73895 * 252.25240 * 6 4 3 34 34 H 1.09001 * 113.74566 * 23.45738 * 6 4 3 35 35 H 1.09004 * 113.77075 * 90.69546 * 7 6 4 36 36 H 1.09003 * 113.77281 * 221.97341 * 7 6 4 37 37 H 0.96998 * 119.99695 * 179.97438 * 12 11 9 38 38 H 1.07997 * 125.90600 * 0.02562 * 20 19 17 39 39 H 1.08997 * 109.52524 * 286.99300 * 25 24 23 40 40 H 1.08994 * 109.56476 * 166.83851 * 25 24 23 41 41 H 1.09005 * 109.51165 * 175.94195 * 26 25 24 42 42 H 1.09007 * 109.55004 * 55.82759 * 26 25 24 43 43 H 1.09006 * 109.75543 * 282.50511 * 27 22 21 44 44 H 1.08996 * 109.75583 * 43.21036 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3266 1.7832 1.4352 5 1 1.3692 2.0650 1.8736 6 6 3.1835 0.8821 2.3426 7 6 3.7944 2.1847 2.8902 8 7 3.3829 2.7988 1.6103 9 6 3.8095 3.8756 0.8797 10 1 3.2791 4.1652 -0.0154 11 6 4.9236 4.5950 1.2897 12 7 5.5697 4.2424 2.3809 13 14 5.5060 6.0635 0.2928 14 1 4.8377 7.2939 0.7875 15 1 6.9770 6.2072 0.4363 16 1 5.1660 5.8566 -1.1379 17 6 2.1390 -1.1671 0.0005 18 8 3.3556 -1.1672 -0.0070 19 6 1.4043 -2.4395 0.0101 20 6 0.0134 -2.6095 0.2200 21 7 -0.2563 -3.8851 0.1512 22 7 0.9224 -4.5871 -0.0931 23 6 1.9389 -3.7003 -0.1778 24 8 3.2279 -4.0489 -0.4061 25 6 3.5245 -5.4400 -0.2138 26 6 2.4546 -6.2845 -0.9143 27 6 1.0955 -6.0368 -0.2453 28 1 -0.3633 -0.1127 1.0215 29 1 -0.3633 -0.8283 -0.6083 30 1 -0.3634 0.9409 -0.4131 31 1 3.1909 1.1148 -0.4214 32 1 1.6573 2.0002 -0.6010 33 1 2.6052 0.3248 3.0797 34 1 3.8921 0.2579 1.7982 35 1 3.2691 2.5859 3.7569 36 1 4.8742 2.1381 3.0315 37 1 6.3484 4.7449 2.6671 38 1 -0.7007 -1.8202 0.4024 39 1 3.5280 -5.6678 0.8521 40 1 4.5027 -5.6666 -0.6379 41 1 2.7134 -7.3403 -0.8332 42 1 2.3986 -6.0032 -1.9659 43 1 1.0746 -6.5152 0.7339 44 1 0.2977 -6.4396 -0.8693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085697721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:25 Heat of formation + Delta-G solvation = 68.309303 kcal Electronic energy + Delta-G solvation = -27585.828603 eV Core-core repulsion = 23735.593264 eV Total energy + Delta-G solvation = -3850.235339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.98198 -40.79191 -39.67999 -39.13254 -36.39290 -35.64100 -34.19265 -32.11812 -31.22597 -29.82061 -29.50693 -27.63804 -27.26018 -25.32561 -25.04412 -23.73896 -22.88665 -21.09350 -20.77010 -20.55100 -18.74132 -18.62443 -18.08085 -17.48848 -17.24933 -16.84214 -16.44940 -16.19911 -15.85307 -15.82704 -15.70612 -15.34816 -15.08381 -14.92707 -14.52533 -14.03086 -13.87189 -13.68398 -13.44050 -13.31943 -12.91384 -12.75267 -12.57946 -12.50944 -12.45534 -12.31728 -12.20823 -12.15604 -11.81579 -11.73912 -11.55354 -11.23428 -10.80778 -10.72085 -10.24563 -9.68014 -9.37298 -8.83167 -7.83863 -5.18168 0.47821 1.10726 1.13943 1.45560 1.49193 1.57275 2.01556 2.11437 2.47217 2.53656 3.16422 3.36047 3.47179 3.49286 3.70537 3.87634 3.94051 3.99436 4.04790 4.17295 4.25800 4.33250 4.39205 4.41285 4.49716 4.52998 4.56902 4.59688 4.73267 4.85218 4.87923 4.89431 4.97256 5.06618 5.09097 5.14917 5.29442 5.40934 5.57091 5.65358 5.82785 5.99953 6.17693 6.46085 6.61306 6.95423 7.41501 7.66452 8.63822 9.33067 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.003031 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.862651 B = 9237.028665 C = 9709.550179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.603 5.603 3 C 0.133 3.867 4 C 0.138 3.862 5 H 0.067 0.933 6 C -0.133 4.133 7 C 0.151 3.849 8 N -0.629 5.629 9 C -0.225 4.225 10 H 0.088 0.912 11 C -0.075 4.075 12 N -0.958 5.958 13 Si 0.979 3.021 14 H -0.284 1.284 15 H -0.298 1.298 16 H -0.266 1.266 17 C 0.587 3.413 18 O -0.587 6.587 19 C -0.331 4.331 20 C 0.094 3.906 21 N -0.298 5.298 22 N -0.393 5.393 23 C 0.327 3.673 24 O -0.297 6.297 25 C 0.028 3.972 26 C -0.164 4.164 27 C 0.115 3.885 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.023 0.977 36 H 0.037 0.963 37 H 0.246 0.754 38 H 0.245 0.755 39 H 0.083 0.917 40 H 0.140 0.860 41 H 0.154 0.846 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 -25.589 -6.517 30.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.335 5.335 3 C 0.009 3.991 4 C 0.031 3.969 5 H 0.085 0.915 6 C -0.171 4.171 7 C 0.025 3.975 8 N -0.356 5.356 9 C -0.353 4.353 10 H 0.106 0.894 11 C -0.267 4.267 12 N -0.607 5.607 13 Si 0.808 3.192 14 H -0.211 1.211 15 H -0.225 1.225 16 H -0.191 1.191 17 C 0.378 3.622 18 O -0.469 6.469 19 C -0.346 4.346 20 C -0.093 4.093 21 N -0.120 5.120 22 N -0.188 5.188 23 C 0.153 3.847 24 O -0.202 6.202 25 C -0.046 4.046 26 C -0.202 4.202 27 C -0.004 4.004 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.260 0.740 39 H 0.101 0.899 40 H 0.158 0.842 41 H 0.172 0.828 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.994 -26.259 -6.646 30.960 hybrid contribution 1.551 1.615 -0.117 2.242 sum -13.443 -24.644 -6.763 28.875 Atomic orbital electron populations 1.22727 0.77320 1.05241 1.03477 1.47491 1.08303 1.04295 1.73390 1.21390 0.96742 0.84163 0.96841 1.22691 0.92488 0.87097 0.94606 0.91523 1.23470 0.99024 0.95872 0.98741 1.22218 0.98056 0.89012 0.88182 1.46289 1.36897 1.30932 1.21457 1.19441 1.07733 1.03364 1.04805 0.89423 1.25683 0.98533 1.03105 0.99398 1.70051 1.21708 1.42809 1.26147 0.85056 0.76622 0.79023 0.78529 1.21076 1.22493 1.19115 1.17390 0.86045 0.83360 0.75368 1.90793 1.15547 1.87697 1.52823 1.19128 0.95620 0.90578 1.29261 1.25423 0.93579 0.94830 0.95480 1.77028 1.03760 1.05645 1.25559 1.49376 1.03893 1.08257 1.57259 1.19881 0.81336 0.90359 0.93151 1.86732 1.19616 1.30618 1.83212 1.23685 1.02024 0.76212 1.02715 1.22680 0.91932 1.04980 1.00634 1.22498 1.00210 0.73021 1.04647 0.90072 0.88284 0.89089 0.93212 0.89645 0.91190 0.92037 0.95961 0.94434 0.94551 0.74003 0.89880 0.84205 0.82776 0.89807 0.87130 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.97 8.74 127.77 1.12 2.09 16 2 N -0.60 -18.76 2.79 -851.22 -2.38 -21.14 16 3 C 0.13 5.14 5.43 86.38 0.47 5.61 16 4 C 0.14 5.92 4.57 45.09 0.21 6.12 16 5 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 6 C -0.13 -5.99 7.27 31.25 0.23 -5.76 16 7 C 0.15 8.06 7.64 86.44 0.66 8.72 16 8 N -0.63 -34.55 3.58 -690.88 -2.48 -37.03 16 9 C -0.23 -13.21 10.51 84.03 0.88 -12.33 16 10 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 11 C -0.07 -4.52 5.50 84.86 0.47 -4.05 16 12 N -0.96 -61.67 11.32 21.65 0.25 -61.43 16 13 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 14 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 15 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 C 0.59 21.36 7.23 86.52 0.63 21.99 16 18 O -0.59 -27.49 14.55 -2.99 -0.04 -27.53 16 19 C -0.33 -9.67 5.95 -20.15 -0.12 -9.79 16 20 C 0.09 1.99 9.86 85.73 0.85 2.83 16 21 N -0.30 -6.44 12.54 -55.94 -0.70 -7.14 16 22 N -0.39 -7.99 4.04 -456.71 -1.85 -9.83 16 23 C 0.33 8.93 7.50 84.18 0.63 9.56 16 24 O -0.30 -8.16 10.22 -86.35 -0.88 -9.05 16 25 C 0.03 0.37 7.02 72.07 0.51 0.88 16 26 C -0.16 -1.05 6.16 30.84 0.19 -0.86 16 27 C 0.11 1.06 7.41 86.49 0.64 1.70 16 28 H 0.08 1.16 7.58 -2.39 -0.02 1.15 16 29 H 0.10 1.41 4.92 -2.39 -0.01 1.40 16 30 H 0.09 1.39 7.89 -2.39 -0.02 1.37 16 31 H 0.05 2.37 7.25 -2.38 -0.02 2.36 16 32 H 0.09 2.93 7.95 -2.39 -0.02 2.91 16 33 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 34 H 0.06 3.12 6.61 -2.39 -0.02 3.10 16 35 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.04 2.27 6.98 -2.39 -0.02 2.25 16 37 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.24 3.18 4.53 -2.91 -0.01 3.17 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.15 -0.29 8.14 -2.38 -0.02 -0.31 16 42 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -89.75 353.84 2.32 -87.43 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.02 Total: 8.88 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: 7.35 Total: 26.71 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -7.15 Total: -136.57 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.93 Total: -36.58 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -89.75 2.32 -87.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085697721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.738 kcal (2) G-P(sol) polarization free energy of solvation -89.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds