Wall clock time and date at job start Tue Mar 31 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35485 * 117.00137 * 180.02562 * 3 2 1 5 5 C 1.39626 * 119.97425 * 179.72572 * 4 3 2 6 6 N 1.31536 * 120.03607 * 179.75255 * 5 4 3 7 7 C 1.33208 * 119.98986 * 0.51756 * 6 5 4 8 8 C 1.47908 * 120.02601 * 179.71473 * 7 6 5 9 9 O 1.21546 * 119.99717 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00006 * 0.02562 * 8 7 6 11 11 C 1.46495 * 119.99880 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46770 * 180.02562 * 11 10 8 13 13 H 1.08997 * 112.85315 * 43.80393 * 12 11 10 14 14 C 1.53784 * 113.60936 * 175.00123 * 12 11 10 15 15 C 1.53786 * 87.07846 * 139.98159 * 14 12 11 16 16 H 1.09000 * 113.61597 * 89.11313 * 15 14 12 17 17 N 1.46503 * 113.60990 * 220.01758 * 15 14 12 18 18 C 1.36939 * 119.99690 * 204.99778 * 17 15 14 19 19 H 1.08000 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00142 * 180.02562 * 18 17 15 21 21 N 1.31627 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00267 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47304 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47224 * 120.00219 * 22 20 18 25 25 H 1.48502 * 109.47005 * 239.99735 * 22 20 18 26 26 C 1.53782 * 87.08160 * 334.56579 * 15 14 12 27 27 C 1.39394 * 119.94751 * 359.72953 * 7 6 5 28 28 N 1.32069 * 119.96225 * 0.02562 * 27 7 6 29 29 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 34 34 H 1.08003 * 119.98672 * 0.02562 * 5 4 3 35 35 H 0.97000 * 119.99801 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.47338 * 299.99835 * 11 10 8 37 37 H 1.09001 * 109.47309 * 60.00346 * 11 10 8 38 38 H 1.09003 * 113.60922 * 254.52426 * 14 12 11 39 39 H 1.08991 * 113.61853 * 25.34708 * 14 12 11 40 40 H 0.96997 * 120.00305 * 24.99474 * 17 15 14 41 41 H 0.96999 * 120.00322 * 180.02562 * 21 20 18 42 42 H 1.09004 * 113.60863 * 270.88633 * 26 15 14 43 43 H 1.08989 * 113.61389 * 139.98547 * 26 15 14 44 44 H 1.08005 * 120.01438 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3495 1.5247 -0.0005 5 6 3.8826 2.8152 -0.0064 6 7 5.1865 2.9890 -0.0020 7 6 5.9989 1.9333 -0.0024 8 6 7.4651 2.1278 -0.0038 9 8 8.2059 1.1642 -0.0047 10 7 7.9797 3.3735 -0.0042 11 6 9.4319 3.5660 -0.0062 12 6 9.7478 5.0631 -0.0056 13 1 9.1269 5.6265 0.6910 14 6 11.2486 5.3759 0.1152 15 6 11.0181 6.4944 -0.9148 16 1 10.7444 7.4500 -0.4677 17 7 12.0941 6.6138 -1.9019 18 6 12.3142 7.8088 -2.5335 19 1 11.6949 8.6632 -2.3036 20 6 13.3332 7.9219 -3.4691 21 7 14.0877 6.8805 -3.7497 22 14 13.6340 9.5521 -4.3301 23 1 12.6573 10.5581 -3.8407 24 1 15.0131 10.0191 -4.0382 25 1 13.4711 9.3754 -5.7956 26 6 9.8128 5.6796 -1.4129 27 6 5.4661 0.6452 -0.0018 28 7 4.1567 0.4730 -0.0013 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2241 3.6713 -0.0100 35 1 7.3884 4.1424 -0.0032 36 1 9.8610 3.1042 0.8831 37 1 9.8584 3.1048 -0.8970 38 1 11.5404 5.7422 1.0995 39 1 11.8923 4.5738 -0.2458 40 1 12.6506 5.8466 -2.1080 41 1 14.8001 6.9596 -4.4032 42 1 10.0640 4.9610 -2.1932 43 1 8.9457 6.2909 -1.6624 44 1 6.1238 -0.2115 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086285877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:18 Heat of formation + Delta-G solvation = 3.465765 kcal Electronic energy + Delta-G solvation = -25238.875466 eV Core-core repulsion = 21385.828300 eV Total energy + Delta-G solvation = -3853.047166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87378 -39.89425 -38.93916 -38.29634 -35.04594 -34.45048 -33.25984 -32.74850 -31.02099 -30.19065 -27.56329 -25.79353 -25.08331 -24.91288 -23.76481 -23.23999 -21.27307 -20.98629 -19.22434 -19.13324 -18.49679 -17.95448 -17.05372 -17.02399 -16.00716 -15.70966 -15.50844 -15.31869 -14.88831 -14.80807 -14.51255 -14.33354 -13.72665 -13.48990 -13.46096 -13.19057 -13.06072 -12.88574 -12.43051 -11.97086 -11.90557 -11.81365 -11.76553 -11.39396 -11.33115 -11.23181 -10.85182 -10.65322 -10.44604 -10.16506 -10.06836 -9.81557 -9.71598 -9.47698 -9.31763 -9.00914 -8.86121 -6.95052 -5.77528 -3.06252 0.03609 0.51560 2.22752 2.45234 2.91851 3.37388 3.43121 3.48287 3.48747 3.51082 3.63722 3.94963 4.43143 4.43356 4.52603 4.59166 4.70615 4.80049 4.97752 4.99894 5.04031 5.08007 5.25168 5.25567 5.43507 5.47764 5.52711 5.55917 5.81700 5.84080 5.94001 6.10341 6.23510 6.31991 6.37491 6.42491 6.45114 6.57282 6.62128 6.84289 7.05893 7.13003 7.42773 7.70633 8.01338 8.41107 9.52240 10.10729 10.44882 11.44925 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.001842 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.719883 B =15195.526695 C =15737.877827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.294 6.294 4 C 0.296 3.704 5 C 0.047 3.953 6 N -0.376 5.376 7 C -0.017 4.017 8 C 0.576 3.424 9 O -0.534 6.534 10 N -0.702 5.702 11 C 0.130 3.870 12 C -0.127 4.127 13 H 0.089 0.911 14 C -0.142 4.142 15 C 0.165 3.835 16 H 0.076 0.924 17 N -0.713 5.713 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.161 4.161 27 C 0.158 3.842 28 N -0.502 5.502 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.185 0.815 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.619 -13.480 10.964 31.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.198 6.198 4 C 0.113 3.887 5 C -0.120 4.120 6 N -0.093 5.093 7 C -0.156 4.156 8 C 0.360 3.640 9 O -0.411 6.411 10 N -0.352 5.352 11 C 0.007 3.993 12 C -0.147 4.147 13 H 0.108 0.892 14 C -0.181 4.181 15 C 0.053 3.947 16 H 0.094 0.906 17 N -0.351 5.351 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.202 4.202 27 C -0.001 4.001 28 N -0.231 5.231 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.202 0.798 35 H 0.246 0.754 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -26.220 -13.794 10.879 31.562 hybrid contribution 0.008 0.670 -0.636 0.924 sum -26.213 -13.125 10.242 31.053 Atomic orbital electron populations 1.21834 0.92401 1.03277 1.03596 1.22794 0.95290 0.80316 1.03037 1.86249 1.15686 1.31599 1.86286 1.21296 0.85285 0.91731 0.90416 1.22986 0.91524 0.95232 1.02291 1.68371 1.03307 1.32623 1.05003 1.22025 0.95611 0.91123 1.06825 1.17449 0.85258 0.83975 0.77339 1.90821 1.59410 1.40225 1.50668 1.45896 1.09000 1.07621 1.72691 1.21554 0.78564 0.96738 1.02435 1.22649 0.98666 0.93325 1.00039 0.89235 1.23449 0.93667 1.00613 1.00419 1.21526 0.88772 0.94709 0.89663 0.90636 1.42420 1.35661 1.11914 1.45077 1.19359 1.12231 0.89523 1.16336 0.91025 1.24769 0.98548 0.97484 1.00165 1.69674 1.22456 1.28797 1.37090 0.86121 0.77597 0.83181 0.79305 1.20535 1.21865 1.21881 1.23950 1.01200 1.00466 0.94575 1.23555 0.89828 0.97847 0.88842 1.68271 1.05301 1.32516 1.17061 0.91388 0.89959 0.91428 0.91089 0.91124 0.79810 0.75379 0.91363 0.90818 0.91969 0.90064 0.78065 0.93519 0.90341 0.92690 0.79545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 10.28 37.16 0.38 -0.18 16 2 C 0.06 0.35 6.04 37.16 0.22 0.57 16 3 O -0.29 -2.26 10.12 -18.15 -0.18 -2.44 16 4 C 0.30 2.61 7.50 -16.71 -0.13 2.48 16 5 C 0.05 0.38 11.18 -17.16 -0.19 0.19 16 6 N -0.38 -3.76 9.70 -9.49 -0.09 -3.85 16 7 C -0.02 -0.19 6.74 -82.88 -0.56 -0.74 16 8 C 0.58 7.47 7.80 -12.30 -0.10 7.37 16 9 O -0.53 -8.33 16.33 5.32 0.09 -8.24 16 10 N -0.70 -8.45 5.55 -61.23 -0.34 -8.79 16 11 C 0.13 1.69 5.51 -4.04 -0.02 1.67 16 12 C -0.13 -1.70 3.76 -89.80 -0.34 -2.04 16 13 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.14 -2.23 7.39 -25.91 -0.19 -2.42 16 15 C 0.17 3.19 4.48 -67.11 -0.30 2.89 16 16 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 17 N -0.71 -17.77 5.40 -52.63 -0.28 -18.06 16 18 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 22 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C -0.16 -2.66 7.43 -25.92 -0.19 -2.86 16 27 C 0.16 1.57 10.76 -17.02 -0.18 1.39 16 28 N -0.50 -4.82 9.37 -12.76 -0.12 -4.94 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 33 H 0.07 0.41 8.11 -51.93 -0.42 -0.02 16 34 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.41 4.38 7.81 -40.82 -0.32 4.06 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 40 H 0.39 10.23 7.92 -40.82 -0.32 9.90 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 43 H 0.05 0.87 8.14 -51.94 -0.42 0.45 16 44 H 0.19 1.63 7.64 -52.48 -0.40 1.23 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -32.52 377.45 -7.85 -40.37 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.47 Total: 9.45 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.84 Total: 0.96 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.11 Total: -63.13 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.10 Total: -10.68 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.52 -7.85 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086285877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.840 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds