Wall clock time and date at job start Tue Mar 31 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 O 1.42901 * 109.47475 * 2 1 4 4 C 1.35486 * 117.00217 * 180.02562 * 3 2 1 5 5 C 1.39627 * 119.97709 * 180.02562 * 4 3 2 6 6 N 1.31533 * 120.03894 * 179.74489 * 5 4 3 7 7 C 1.33209 * 119.99016 * 0.50376 * 6 5 4 8 8 C 1.47902 * 120.02714 * 179.74209 * 7 6 5 9 9 O 1.21546 * 119.99899 * 179.72945 * 8 7 6 10 10 N 1.34774 * 119.99719 * 359.73413 * 8 7 6 11 11 C 1.46504 * 119.99811 * 179.97438 * 10 8 7 12 12 H 1.08996 * 110.63797 * 323.31096 * 11 10 8 13 13 C 1.55155 * 110.71889 * 86.45186 * 11 10 8 14 14 C 1.54912 * 101.57968 * 154.04276 * 13 11 10 15 15 N 1.47426 * 104.83261 * 322.99067 * 14 13 11 16 16 C 1.36941 * 125.64875 * 203.86480 * 15 14 13 17 17 H 1.08001 * 120.00063 * 180.02562 * 16 15 14 18 18 C 1.38810 * 119.99930 * 0.02562 * 16 15 14 19 19 N 1.31617 * 120.00219 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00125 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46974 * 59.99759 * 20 18 16 22 22 H 1.48495 * 109.47103 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46839 * 299.99961 * 20 18 16 24 24 C 1.47024 * 108.70449 * 24.12870 * 15 14 13 25 25 H 1.09002 * 109.88101 * 239.52444 * 24 15 14 26 26 C 1.53001 * 109.88112 * 118.35785 * 24 15 14 27 27 C 1.39399 * 119.94997 * 359.47510 * 7 6 5 28 28 N 1.32077 * 119.95938 * 0.27472 * 27 7 6 29 29 H 1.08999 * 109.47471 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47130 * 300.00190 * 1 2 3 31 31 H 1.09004 * 109.47777 * 59.99698 * 1 2 3 32 32 H 1.09008 * 109.47130 * 239.99810 * 2 1 3 33 33 H 1.09007 * 109.47313 * 120.00487 * 2 1 3 34 34 H 1.07998 * 119.97800 * 0.02562 * 5 4 3 35 35 H 0.96999 * 120.00347 * 359.97438 * 10 8 7 36 36 H 1.08997 * 111.00368 * 35.97468 * 13 11 10 37 37 H 1.08992 * 111.03872 * 272.12933 * 13 11 10 38 38 H 1.09002 * 110.36496 * 204.15483 * 14 13 11 39 39 H 1.08997 * 110.36790 * 81.83118 * 14 13 11 40 40 H 0.97004 * 120.00482 * 180.02562 * 19 18 16 41 41 H 1.08993 * 109.46793 * 61.45719 * 26 24 15 42 42 H 1.09005 * 109.46593 * 181.45282 * 26 24 15 43 43 H 1.08995 * 109.46984 * 301.45265 * 26 24 15 44 44 H 1.08002 * 120.01759 * 180.29002 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3495 1.5247 -0.0005 5 6 3.8827 2.8152 0.0000 6 7 5.1865 2.9889 0.0045 7 6 5.9989 1.9333 -0.0015 8 6 7.4651 2.1277 -0.0022 9 8 8.2059 1.1641 -0.0027 10 7 7.9796 3.3733 -0.0021 11 6 9.4319 3.5659 -0.0022 12 1 9.9203 2.8056 0.6072 13 6 9.9878 3.5492 -1.4506 14 6 11.2733 4.4004 -1.3002 15 7 10.9155 5.4573 -0.3367 16 6 11.5260 6.6783 -0.2282 17 1 11.1886 7.3867 0.5140 18 6 12.5784 7.0056 -1.0721 19 7 12.9892 6.1425 -1.9769 20 14 13.4116 8.6708 -0.9236 21 1 13.9848 8.8178 0.4384 22 1 14.4979 8.7724 -1.9309 23 1 12.4147 9.7459 -1.1598 24 6 9.7989 4.9809 0.4927 25 1 8.9432 5.6466 0.3800 26 6 10.2281 4.9240 1.9601 27 6 5.4661 0.6451 -0.0016 28 7 4.1566 0.4729 -0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2241 3.6712 0.0012 35 1 7.3884 4.1423 -0.0020 36 1 9.2881 4.0173 -2.1430 37 1 10.2264 2.5337 -1.7665 38 1 11.5520 4.8392 -2.2584 39 1 12.0883 3.7911 -0.9097 40 1 13.7249 6.3710 -2.5664 41 1 10.4981 5.9242 2.2987 42 1 9.4040 4.5457 2.5652 43 1 11.0876 4.2615 2.0619 44 1 6.1238 -0.2116 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089078421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:04 Heat of formation + Delta-G solvation = 3.988512 kcal Electronic energy + Delta-G solvation = -26377.131800 eV Core-core repulsion = 22524.107302 eV Total energy + Delta-G solvation = -3853.024498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74144 -39.75681 -38.76799 -37.47365 -34.75416 -33.90094 -32.67617 -31.99095 -30.77261 -30.32658 -28.58297 -25.84689 -25.39294 -24.15270 -23.94812 -23.14479 -21.11759 -20.13476 -19.83612 -19.05063 -18.40038 -17.60021 -16.95159 -16.75481 -15.97242 -15.32864 -15.25200 -15.19465 -14.67782 -14.34129 -14.29496 -13.92508 -13.65512 -13.34493 -13.11973 -13.06288 -12.76799 -12.32958 -12.11741 -11.99891 -11.86500 -11.65627 -11.55086 -11.24055 -11.13307 -10.84837 -10.82938 -10.55088 -10.47997 -10.17572 -10.10861 -9.76367 -9.59826 -9.48688 -9.16082 -8.67489 -8.60008 -6.86366 -5.64268 -3.06986 0.17579 0.64508 2.33310 2.63762 3.12611 3.41173 3.45479 3.46787 3.53827 3.60456 3.79298 4.08216 4.48945 4.50312 4.51924 4.69230 4.83694 4.88721 5.12096 5.18456 5.29156 5.32341 5.43303 5.51282 5.55186 5.64226 5.66830 5.82469 6.14169 6.25735 6.32150 6.35076 6.53336 6.54475 6.61233 6.69674 6.73170 6.87265 7.09167 7.22282 7.52911 7.63355 7.70400 7.86286 8.26670 8.36477 9.21705 9.82591 10.46457 11.39146 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031578 B = 0.002295 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.471807 B =12198.565957 C =12490.050278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.295 6.295 4 C 0.294 3.706 5 C 0.047 3.953 6 N -0.375 5.375 7 C -0.012 4.012 8 C 0.577 3.423 9 O -0.534 6.534 10 N -0.692 5.692 11 C 0.133 3.867 12 H 0.094 0.906 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.155 3.845 25 H 0.038 0.962 26 C -0.155 4.155 27 C 0.157 3.843 28 N -0.502 5.502 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.184 0.816 35 H 0.408 0.592 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.015 0.985 40 H 0.253 0.747 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.034 -11.308 3.991 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.199 6.199 4 C 0.110 3.890 5 C -0.120 4.120 6 N -0.093 5.093 7 C -0.152 4.152 8 C 0.360 3.640 9 O -0.411 6.411 10 N -0.341 5.341 11 C 0.029 3.971 12 H 0.112 0.888 13 C -0.192 4.192 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.047 3.953 25 H 0.056 0.944 26 C -0.215 4.215 27 C -0.002 4.002 28 N -0.232 5.232 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.493 -11.691 3.885 25.646 hybrid contribution 0.139 0.931 0.146 0.952 sum -22.354 -10.761 4.031 25.134 Atomic orbital electron populations 1.21831 0.92484 1.03211 1.03558 1.22776 0.95214 0.80432 1.03002 1.86243 1.15764 1.31478 1.86439 1.21286 0.85217 0.91763 0.90741 1.22983 0.91569 0.95167 1.02328 1.68395 1.03245 1.32673 1.04950 1.22099 0.95760 0.91029 1.06269 1.17402 0.85073 0.84075 0.77412 1.90806 1.59296 1.40180 1.50841 1.45924 1.08689 1.07475 1.72044 1.22248 0.77881 0.98382 0.98593 0.88804 1.23409 1.00513 1.00557 0.94762 1.21951 0.90130 0.87689 0.97406 1.44482 1.36247 1.14354 1.36910 1.18974 1.10980 0.90120 1.14741 0.90487 1.24790 0.98838 0.98426 0.98584 1.69786 1.29838 1.34172 1.23148 0.86155 0.78925 0.83263 0.77144 1.21255 1.21615 1.21185 1.20984 0.92271 0.91107 0.90905 0.94449 1.22244 1.00082 1.01812 0.97364 1.23553 0.89773 0.97887 0.89033 1.68265 1.05324 1.32499 1.17074 0.90015 0.91450 0.91427 0.91143 0.91161 0.79908 0.75613 0.91920 0.91821 0.87329 0.96687 0.93654 0.92620 0.94318 0.92898 0.79543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.28 37.15 0.38 -0.28 16 2 C 0.06 0.40 6.04 37.15 0.22 0.63 16 3 O -0.29 -2.55 10.12 -18.15 -0.18 -2.73 16 4 C 0.29 2.92 7.50 -16.71 -0.13 2.80 16 5 C 0.05 0.45 11.18 -17.16 -0.19 0.25 16 6 N -0.38 -4.41 9.70 -9.49 -0.09 -4.50 16 7 C -0.01 -0.16 6.74 -82.88 -0.56 -0.72 16 8 C 0.58 8.87 7.80 -12.30 -0.10 8.77 16 9 O -0.53 -9.51 16.06 5.32 0.09 -9.42 16 10 N -0.69 -10.77 5.20 -52.95 -0.28 -11.04 16 11 C 0.13 2.44 2.76 -66.09 -0.18 2.26 16 12 H 0.09 1.80 7.40 -51.93 -0.38 1.42 16 13 C -0.15 -3.05 6.77 -24.58 -0.17 -3.21 16 14 C 0.15 3.73 5.88 -2.53 -0.01 3.71 16 15 N -0.59 -14.80 3.13 -162.56 -0.51 -15.31 16 16 C -0.22 -5.97 9.86 -15.06 -0.15 -6.12 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 20 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.16 3.14 3.48 -66.95 -0.23 2.90 16 25 H 0.04 0.75 7.70 -51.93 -0.40 0.35 16 26 C -0.16 -2.89 9.14 37.16 0.34 -2.55 16 27 C 0.16 1.78 10.76 -17.01 -0.18 1.59 16 28 N -0.50 -5.41 9.37 -12.76 -0.12 -5.53 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.47 8.11 -51.92 -0.42 0.05 16 33 H 0.07 0.47 8.11 -51.93 -0.42 0.04 16 34 H 0.18 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.41 5.81 7.67 -40.82 -0.31 5.49 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.11 2.96 5.89 -51.93 -0.31 2.65 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.05 1.07 8.02 -51.93 -0.42 0.65 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.19 1.89 7.64 -52.49 -0.40 1.49 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -31.16 368.08 -7.47 -38.63 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.41 Total: 3.89 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -1.05 Total: 9.64 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -0.44 Total: -62.43 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.10 Total: -12.16 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.16 -7.47 -38.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089078421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.620 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds