Wall clock time and date at job start Tue Mar 31 2020 04:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 O 1.42901 * 109.47475 * 2 1 4 4 C 1.35486 * 117.00217 * 180.02562 * 3 2 1 5 5 C 1.39627 * 119.97709 * 180.02562 * 4 3 2 6 6 N 1.31533 * 120.03894 * 179.74489 * 5 4 3 7 7 C 1.33209 * 119.99016 * 0.50376 * 6 5 4 8 8 C 1.47902 * 120.02714 * 179.74209 * 7 6 5 9 9 O 1.21546 * 119.99899 * 179.72945 * 8 7 6 10 10 N 1.34774 * 119.99719 * 359.73413 * 8 7 6 11 11 C 1.46504 * 119.99811 * 179.97438 * 10 8 7 12 12 H 1.08996 * 110.63797 * 323.31096 * 11 10 8 13 13 C 1.55155 * 110.71889 * 86.45186 * 11 10 8 14 14 C 1.54912 * 101.57968 * 154.04276 * 13 11 10 15 15 N 1.47426 * 104.83261 * 322.99067 * 14 13 11 16 16 C 1.36941 * 125.64875 * 203.86480 * 15 14 13 17 17 H 1.08001 * 120.00063 * 180.02562 * 16 15 14 18 18 C 1.38810 * 119.99930 * 0.02562 * 16 15 14 19 19 N 1.31617 * 120.00219 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00125 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46974 * 59.99759 * 20 18 16 22 22 H 1.48495 * 109.47103 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46839 * 299.99961 * 20 18 16 24 24 C 1.47024 * 108.70449 * 24.12870 * 15 14 13 25 25 H 1.09002 * 109.88101 * 239.52444 * 24 15 14 26 26 C 1.53001 * 109.88112 * 118.35785 * 24 15 14 27 27 C 1.39399 * 119.94997 * 359.47510 * 7 6 5 28 28 N 1.32077 * 119.95938 * 0.27472 * 27 7 6 29 29 H 1.08999 * 109.47471 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47130 * 300.00190 * 1 2 3 31 31 H 1.09004 * 109.47777 * 59.99698 * 1 2 3 32 32 H 1.09008 * 109.47130 * 239.99810 * 2 1 3 33 33 H 1.09007 * 109.47313 * 120.00487 * 2 1 3 34 34 H 1.07998 * 119.97800 * 0.02562 * 5 4 3 35 35 H 0.96999 * 120.00347 * 359.97438 * 10 8 7 36 36 H 1.08997 * 111.00368 * 35.97468 * 13 11 10 37 37 H 1.08992 * 111.03872 * 272.12933 * 13 11 10 38 38 H 1.09002 * 110.36496 * 204.15483 * 14 13 11 39 39 H 1.08997 * 110.36790 * 81.83118 * 14 13 11 40 40 H 0.97004 * 120.00482 * 180.02562 * 19 18 16 41 41 H 1.08993 * 109.46793 * 61.45719 * 26 24 15 42 42 H 1.09005 * 109.46593 * 181.45282 * 26 24 15 43 43 H 1.08995 * 109.46984 * 301.45265 * 26 24 15 44 44 H 1.08002 * 120.01759 * 180.29002 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3495 1.5247 -0.0005 5 6 3.8827 2.8152 0.0000 6 7 5.1865 2.9889 0.0045 7 6 5.9989 1.9333 -0.0015 8 6 7.4651 2.1277 -0.0022 9 8 8.2059 1.1641 -0.0027 10 7 7.9796 3.3733 -0.0021 11 6 9.4319 3.5659 -0.0022 12 1 9.9203 2.8056 0.6072 13 6 9.9878 3.5492 -1.4506 14 6 11.2733 4.4004 -1.3002 15 7 10.9155 5.4573 -0.3367 16 6 11.5260 6.6783 -0.2282 17 1 11.1886 7.3867 0.5140 18 6 12.5784 7.0056 -1.0721 19 7 12.9892 6.1425 -1.9769 20 14 13.4116 8.6708 -0.9236 21 1 13.9848 8.8178 0.4384 22 1 14.4979 8.7724 -1.9309 23 1 12.4147 9.7459 -1.1598 24 6 9.7989 4.9809 0.4927 25 1 8.9432 5.6466 0.3800 26 6 10.2281 4.9240 1.9601 27 6 5.4661 0.6451 -0.0016 28 7 4.1566 0.4729 -0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2241 3.6712 0.0012 35 1 7.3884 4.1423 -0.0020 36 1 9.2881 4.0173 -2.1430 37 1 10.2264 2.5337 -1.7665 38 1 11.5520 4.8392 -2.2584 39 1 12.0883 3.7911 -0.9097 40 1 13.7249 6.3710 -2.5664 41 1 10.4981 5.9242 2.2987 42 1 9.4040 4.5457 2.5652 43 1 11.0876 4.2615 2.0619 44 1 6.1238 -0.2116 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089078421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:03 Heat of formation + Delta-G solvation = -18.712881 kcal Electronic energy + Delta-G solvation = -26378.116206 eV Core-core repulsion = 22524.107302 eV Total energy + Delta-G solvation = -3854.008904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.58714 -40.95175 -39.70459 -38.98258 -35.84152 -35.26601 -33.82413 -33.21205 -32.06763 -31.55947 -30.34723 -27.02838 -26.35572 -25.89194 -25.28525 -23.71495 -22.48094 -21.67348 -21.49155 -19.76592 -19.39328 -18.69014 -18.65130 -17.62572 -17.42401 -16.64202 -16.31905 -16.16821 -15.98116 -15.71912 -15.41325 -15.24606 -15.06998 -14.48894 -14.31427 -13.98518 -13.81469 -13.58611 -13.49442 -13.23091 -13.04330 -12.92491 -12.70738 -12.59307 -12.44358 -12.43407 -12.23356 -12.11812 -12.00899 -11.80750 -11.56194 -11.48367 -11.40841 -10.70515 -10.45655 -10.16588 -9.85439 -8.88101 -7.72832 -5.17642 -0.70872 -0.16361 1.49464 1.52408 1.57447 1.58429 1.63062 1.95035 2.53008 2.59337 2.80795 2.90526 3.26733 3.37484 3.57042 3.78937 3.84535 3.92753 3.96322 4.05290 4.16446 4.21097 4.40926 4.45823 4.51569 4.62127 4.63818 4.68491 4.82169 4.94140 4.94526 4.97573 5.05998 5.12237 5.22865 5.35222 5.51772 5.58028 5.62114 5.81975 5.84903 5.87424 6.30605 6.32396 6.55054 7.06014 7.13112 7.80689 8.44287 9.28976 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031578 B = 0.002295 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.471807 B =12198.565957 C =12490.050278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.293 6.293 4 C 0.299 3.701 5 C 0.055 3.945 6 N -0.385 5.385 7 C -0.031 4.031 8 C 0.581 3.419 9 O -0.562 6.562 10 N -0.687 5.687 11 C 0.151 3.849 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.158 3.842 15 N -0.613 5.613 16 C -0.226 4.226 17 H 0.085 0.915 18 C -0.070 4.070 19 N -0.950 5.950 20 Si 0.979 3.021 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.276 1.276 24 C 0.151 3.849 25 H 0.049 0.951 26 C -0.146 4.146 27 C 0.160 3.840 28 N -0.509 5.509 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.216 0.784 35 H 0.416 0.584 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.077 0.923 39 H -0.011 1.011 40 H 0.246 0.754 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.877 -11.115 4.952 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.197 6.197 4 C 0.114 3.886 5 C -0.113 4.113 6 N -0.102 5.102 7 C -0.168 4.168 8 C 0.366 3.634 9 O -0.441 6.441 10 N -0.337 5.337 11 C 0.046 3.954 12 H 0.105 0.895 13 C -0.178 4.178 14 C 0.032 3.968 15 N -0.338 5.338 16 C -0.355 4.355 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.202 1.202 24 C 0.044 3.956 25 H 0.067 0.933 26 C -0.206 4.206 27 C 0.002 3.998 28 N -0.239 5.239 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.254 0.746 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.007 0.993 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -25.381 -11.507 4.875 28.291 hybrid contribution 0.827 0.808 -0.132 1.164 sum -24.554 -10.699 4.743 27.200 Atomic orbital electron populations 1.21848 0.90588 1.04435 1.03691 1.23010 0.96682 0.79415 1.02934 1.86269 1.14860 1.32805 1.85787 1.21517 0.85731 0.91864 0.89465 1.23490 0.91052 0.96082 1.00714 1.68352 1.04120 1.32404 1.05335 1.21651 0.94259 0.91929 1.08960 1.17697 0.86185 0.83287 0.76193 1.90790 1.60419 1.40908 1.51975 1.45722 1.07320 1.08189 1.72438 1.21836 0.79631 0.97081 0.96869 0.89473 1.23206 0.98423 0.99927 0.96238 1.21672 0.91543 0.87813 0.95726 1.44715 1.37184 1.13974 1.37975 1.19348 1.10805 0.91081 1.14299 0.89722 1.25620 0.99989 1.01841 0.98794 1.70037 1.30166 1.35808 1.24022 0.85139 0.77699 0.79509 0.76894 1.20604 1.22367 1.20187 1.21175 0.91114 0.92079 0.91229 0.93289 1.22122 1.00702 1.01254 0.96497 1.23605 0.90119 0.97589 0.88491 1.68309 1.05022 1.32955 1.17598 0.88272 0.91253 0.91313 0.91277 0.91184 0.76762 0.74596 0.91507 0.91148 0.90489 0.99347 0.94461 0.93321 0.91161 0.94227 0.78942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 71.98 0.74 -0.18 16 2 C 0.05 0.60 6.04 71.98 0.43 1.04 16 3 O -0.29 -4.33 10.12 -87.86 -0.89 -5.22 16 4 C 0.30 5.23 7.50 84.91 0.64 5.87 16 5 C 0.06 0.90 11.18 85.07 0.95 1.85 16 6 N -0.38 -8.20 9.70 -183.93 -1.78 -9.98 16 7 C -0.03 -0.74 6.74 41.78 0.28 -0.46 16 8 C 0.58 17.25 7.80 86.80 0.68 17.93 16 9 O -0.56 -19.71 16.06 -3.86 -0.06 -19.77 16 10 N -0.69 -20.43 5.20 -439.72 -2.29 -22.72 16 11 C 0.15 5.44 2.76 46.18 0.13 5.57 16 12 H 0.09 3.31 7.40 -2.39 -0.02 3.29 16 13 C -0.14 -5.55 6.77 31.99 0.22 -5.33 16 14 C 0.16 7.94 5.88 86.86 0.51 8.45 16 15 N -0.61 -30.82 3.13 -668.23 -2.09 -32.91 16 16 C -0.23 -12.35 9.86 84.03 0.83 -11.52 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 19 N -0.95 -56.68 10.09 21.65 0.22 -56.46 16 20 Si 0.98 45.46 29.55 68.60 2.03 47.48 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.15 5.96 3.48 45.34 0.16 6.12 16 25 H 0.05 1.86 7.70 -2.39 -0.02 1.84 16 26 C -0.15 -5.26 9.14 71.98 0.66 -4.61 16 27 C 0.16 3.43 10.76 84.94 0.91 4.35 16 28 N -0.51 -10.06 9.37 -307.07 -2.88 -12.94 16 29 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.80 8.11 -2.38 -0.02 0.78 16 33 H 0.07 0.79 8.11 -2.38 -0.02 0.77 16 34 H 0.22 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.42 11.07 7.67 -92.71 -0.71 10.36 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.08 4.39 5.89 -2.39 -0.01 4.37 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 41 H 0.05 1.80 8.02 -2.39 -0.02 1.78 16 42 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.19 3.75 7.64 -2.91 -0.02 3.73 16 Total: -1.00 -67.78 368.08 0.17 -67.62 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.31 Total: 19.32 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 7.60 Total: 25.59 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -8.82 Total: -135.02 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.95 Total: -24.99 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -67.78 0.17 -67.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089078421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.903 kcal (2) G-P(sol) polarization free energy of solvation -67.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds