Wall clock time and date at job start Tue Mar 31 2020 04:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29104 * 126.00788 * 2 1 4 4 N 1.29012 * 110.26079 * 179.97438 * 3 2 1 5 5 C 1.32907 * 108.63720 * 359.97438 * 4 3 2 6 6 C 1.34392 * 126.00644 * 180.02562 * 2 1 3 7 7 C 1.50537 * 129.25666 * 0.10473 * 6 2 1 8 8 C 1.53439 * 108.32508 * 163.51515 * 7 6 2 9 9 H 1.08998 * 109.45318 * 289.71119 * 8 7 6 10 10 C 1.50698 * 109.45488 * 169.74569 * 8 7 6 11 11 O 1.21285 * 120.00221 * 326.16715 * 10 8 7 12 12 N 1.34776 * 120.00023 * 145.89613 * 10 8 7 13 13 C 1.47420 * 125.65096 * 175.08051 * 12 10 8 14 14 C 1.55138 * 104.72294 * 155.81656 * 13 12 10 15 15 C 1.55152 * 101.48249 * 37.29956 * 14 13 12 16 16 O 1.42904 * 110.87474 * 82.76740 * 15 14 13 17 17 C 1.50704 * 110.72073 * 205.97024 * 15 14 13 18 18 H 1.07991 * 120.00260 * 113.51936 * 17 15 14 19 19 C 1.37876 * 119.99731 * 293.52393 * 17 15 14 20 20 N 1.31517 * 119.99970 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00146 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46888 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47273 * 119.99617 * 21 19 17 24 24 H 1.48495 * 109.47526 * 239.99884 * 21 19 17 25 25 C 1.47030 * 125.64581 * 355.39386 * 12 10 8 26 26 C 1.53105 * 109.56017 * 49.71851 * 8 7 6 27 27 C 1.50594 * 129.16435 * 180.12754 * 5 4 3 28 28 H 1.09004 * 109.46962 * 269.95152 * 1 2 3 29 29 H 1.08996 * 109.47606 * 29.95588 * 1 2 3 30 30 H 1.09002 * 109.47117 * 149.95935 * 1 2 3 31 31 H 1.08994 * 109.69684 * 43.80339 * 7 6 2 32 32 H 1.08994 * 109.72141 * 283.23806 * 7 6 2 33 33 H 1.08995 * 110.37209 * 274.74567 * 13 12 10 34 34 H 1.09001 * 110.36628 * 37.07144 * 13 12 10 35 35 H 1.08998 * 111.18894 * 279.19448 * 14 13 12 36 36 H 1.08996 * 110.93751 * 155.28963 * 14 13 12 37 37 H 0.96692 * 113.99871 * 66.38752 * 16 15 14 38 38 H 0.97006 * 119.99815 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.88118 * 300.43470 * 25 12 10 40 40 H 1.08991 * 109.88365 * 61.60317 * 25 12 10 41 41 H 1.09000 * 109.45115 * 49.97781 * 26 8 7 42 42 H 1.08992 * 109.45390 * 169.91277 * 26 8 7 43 43 H 1.08997 * 109.69551 * 283.13047 * 27 5 4 44 44 H 1.09002 * 109.69198 * 43.71575 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6942 0.0005 5 6 3.5327 -0.6331 0.0015 6 6 2.2550 -1.0872 -0.0005 7 6 1.8721 -2.5430 -0.0033 8 6 3.1008 -3.3642 -0.4160 9 1 3.3121 -3.1956 -1.4719 10 6 2.8262 -4.8281 -0.1866 11 8 2.1313 -5.1762 0.7445 12 7 3.3485 -5.7503 -1.0192 13 6 3.2469 -7.2118 -0.8550 14 6 3.4191 -7.7824 -2.2874 15 6 4.4859 -6.8219 -2.8762 16 8 5.8016 -7.2235 -2.4894 17 6 4.3712 -6.7534 -4.3773 18 1 4.0656 -5.8339 -4.8542 19 6 4.6562 -7.8648 -5.1418 20 7 5.0287 -8.9845 -4.5611 21 14 4.5134 -7.7803 -7.0024 22 1 4.0789 -6.4183 -7.4041 23 1 5.8329 -8.0800 -7.6143 24 1 3.5144 -8.7755 -7.4680 25 6 4.1194 -5.4653 -2.2383 26 6 4.3090 -2.9347 0.4205 27 6 4.7468 -1.5241 0.0050 28 1 -0.3633 -0.0009 1.0277 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 1.0635 -2.7088 -0.7150 32 1 1.5499 -2.8405 0.9946 33 1 4.0392 -7.5762 -0.2013 34 1 2.2696 -7.4816 -0.4547 35 1 2.4873 -7.7233 -2.8497 36 1 3.7903 -8.8067 -2.2566 37 1 6.0804 -8.0703 -2.8638 38 1 5.2297 -9.7664 -5.0991 39 1 3.5142 -4.8811 -2.9315 40 1 5.0270 -4.9182 -1.9835 41 1 4.0379 -2.9343 1.4762 42 1 5.1302 -3.6325 0.2571 43 1 5.1833 -1.5541 -0.9933 44 1 5.4800 -1.1430 0.7158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362595607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:24 Heat of formation + Delta-G solvation = 6.178906 kcal Electronic energy + Delta-G solvation = -27687.931375 eV Core-core repulsion = 23835.001859 eV Total energy + Delta-G solvation = -3852.929516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.50565 -39.93075 -37.72421 -36.42170 -35.03261 -34.35733 -32.23450 -30.92638 -30.70994 -29.53382 -28.38007 -28.00262 -25.29757 -24.66340 -23.45417 -21.98941 -21.49186 -20.06110 -19.86789 -18.52813 -17.52502 -17.20810 -17.01326 -16.55805 -15.61327 -15.07488 -15.02421 -14.57193 -14.24333 -14.16566 -14.02314 -13.97782 -13.58379 -13.41945 -13.05139 -12.98951 -12.53069 -12.25769 -12.18141 -11.98122 -11.77873 -11.58962 -11.41648 -11.35432 -11.21313 -11.07196 -10.94463 -10.64080 -10.58873 -10.53213 -10.20957 -10.07344 -9.63796 -9.37132 -8.91874 -8.75493 -8.28625 -8.12194 -6.38177 -4.46287 1.44207 2.16503 2.45510 2.87846 3.12705 3.22423 3.25045 3.36126 4.04679 4.18180 4.27933 4.46195 4.62113 4.67251 4.73452 4.78887 4.89013 4.95493 5.07662 5.17667 5.33573 5.35944 5.47106 5.54541 5.70987 5.73475 5.80074 5.85183 5.92387 5.93982 5.96854 6.08696 6.18188 6.19457 6.28633 6.42972 6.50570 6.83256 6.87971 7.22303 7.26007 7.64661 7.86813 8.00592 8.40791 8.47289 8.55614 9.22560 9.35938 10.69577 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017448 B = 0.003295 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.405774 B = 8494.418573 C = 8985.105377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.285 5.285 3 N -0.101 5.101 4 N -0.262 5.262 5 C -0.018 4.018 6 C -0.012 4.012 7 C -0.029 4.029 8 C -0.098 4.098 9 H 0.099 0.901 10 C 0.531 3.469 11 O -0.559 6.559 12 N -0.604 5.604 13 C 0.103 3.897 14 C -0.138 4.138 15 C 0.249 3.751 16 O -0.587 6.587 17 C -0.538 4.538 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.111 3.889 26 C -0.106 4.106 27 C -0.030 4.030 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.388 0.612 38 H 0.269 0.731 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 10.191 7.174 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.077 5.077 3 N -0.079 5.079 4 N -0.126 5.126 5 C -0.158 4.158 6 C -0.146 4.146 7 C -0.068 4.068 8 C -0.120 4.120 9 H 0.117 0.883 10 C 0.319 3.681 11 O -0.438 6.438 12 N -0.336 5.336 13 C -0.019 4.019 14 C -0.176 4.176 15 C 0.208 3.792 16 O -0.397 6.397 17 C -0.576 4.576 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.012 4.012 26 C -0.144 4.144 27 C -0.070 4.070 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.240 0.760 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.879 12.031 7.984 15.994 hybrid contribution -0.377 -1.680 -1.467 2.262 sum -7.256 10.351 6.517 14.222 Atomic orbital electron populations 1.22275 0.72815 1.05961 1.05076 1.46798 1.09140 1.04616 1.47176 1.78553 0.96164 1.11293 1.21920 1.74777 1.09559 1.12004 1.16296 1.21714 0.95078 0.91273 1.07731 1.21800 0.91281 0.92149 1.09412 1.19998 0.97704 0.84878 1.04229 1.21267 0.96128 0.91795 1.02839 0.88305 1.19898 0.79501 0.86968 0.81706 1.90645 1.39314 1.82065 1.31803 1.48651 1.52707 1.07150 1.25086 1.22424 1.00534 0.79169 0.99753 1.23371 1.01147 1.01344 0.91779 1.19394 0.80813 0.87028 0.91923 1.86074 1.33135 1.44859 1.75649 1.21563 1.47126 0.98155 0.90762 0.91667 1.24989 0.93611 0.94891 0.99498 1.69580 1.45890 1.01897 1.36150 0.86359 0.77929 0.78318 0.84362 1.19604 1.20687 1.20812 1.22255 0.94363 0.99981 0.84555 1.21537 0.96832 0.96022 1.00018 1.19965 0.92441 0.91091 1.03454 0.88974 0.87985 0.88220 0.89883 0.88085 0.92003 0.91858 0.91509 0.89669 0.76020 0.92049 0.90932 0.91648 0.90614 0.89669 0.89344 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 11.27 59.85 0.67 1.17 16 2 N -0.29 -3.28 3.73 -64.00 -0.24 -3.52 16 3 N -0.10 -1.45 13.19 60.35 0.80 -0.66 16 4 N -0.26 -4.03 12.40 33.16 0.41 -3.62 16 5 C -0.02 -0.24 7.11 -83.12 -0.59 -0.83 16 6 C -0.01 -0.15 6.76 -82.50 -0.56 -0.71 16 7 C -0.03 -0.32 5.09 -27.73 -0.14 -0.47 16 8 C -0.10 -1.27 2.19 -91.49 -0.20 -1.47 16 9 H 0.10 1.25 6.93 -51.93 -0.36 0.89 16 10 C 0.53 8.78 6.83 -10.99 -0.08 8.70 16 11 O -0.56 -10.57 16.29 5.55 0.09 -10.48 16 12 N -0.60 -10.85 3.32 -170.38 -0.57 -11.42 16 13 C 0.10 1.94 6.93 -2.41 -0.02 1.92 16 14 C -0.14 -2.87 5.69 -24.46 -0.14 -3.01 16 15 C 0.25 5.52 0.85 -89.94 -0.08 5.44 16 16 O -0.59 -13.82 13.09 -35.23 -0.46 -14.28 16 17 C -0.54 -13.04 8.21 -34.44 -0.28 -13.32 16 18 H 0.07 1.56 7.53 -52.49 -0.40 1.17 16 19 C 0.07 1.77 5.28 -17.82 -0.09 1.68 16 20 N -0.90 -22.05 10.70 55.43 0.59 -21.46 16 21 Si 0.90 19.27 29.54 -169.99 -5.02 14.25 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.11 2.08 5.36 -3.06 -0.02 2.06 16 26 C -0.11 -1.24 5.19 -26.45 -0.14 -1.37 16 27 C -0.03 -0.34 6.30 -27.71 -0.17 -0.52 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.45 7.71 -51.93 -0.40 0.05 16 31 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 32 H 0.10 1.19 7.51 -51.93 -0.39 0.80 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.15 7.99 -51.93 -0.41 0.73 16 35 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 36 H 0.08 1.87 7.77 -51.93 -0.40 1.47 16 37 H 0.39 9.39 6.98 45.56 0.32 9.71 16 38 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 39 H 0.07 1.30 7.39 -51.93 -0.38 0.92 16 40 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 41 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 42 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -29.73 355.69 -6.63 -36.36 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.77 Total: 10.17 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.83 Total: -0.71 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 1.00 Total: -40.67 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.37 Total: -24.76 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.73 -6.63 -36.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362595607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.540 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds