Wall clock time and date at job start Tue Mar 31 2020 04:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29104 * 126.00788 * 2 1 4 4 N 1.29012 * 110.26079 * 179.97438 * 3 2 1 5 5 C 1.32907 * 108.63720 * 359.97438 * 4 3 2 6 6 C 1.34392 * 126.00644 * 180.02562 * 2 1 3 7 7 C 1.50537 * 129.25666 * 0.10473 * 6 2 1 8 8 C 1.53439 * 108.32508 * 163.51515 * 7 6 2 9 9 H 1.08998 * 109.45318 * 289.71119 * 8 7 6 10 10 C 1.50698 * 109.45488 * 169.74569 * 8 7 6 11 11 O 1.21285 * 120.00221 * 326.16715 * 10 8 7 12 12 N 1.34776 * 120.00023 * 145.89613 * 10 8 7 13 13 C 1.47420 * 125.65096 * 175.08051 * 12 10 8 14 14 C 1.55138 * 104.72294 * 155.81656 * 13 12 10 15 15 C 1.55152 * 101.48249 * 37.29956 * 14 13 12 16 16 O 1.42904 * 110.87474 * 82.76740 * 15 14 13 17 17 C 1.50704 * 110.72073 * 205.97024 * 15 14 13 18 18 H 1.07991 * 120.00260 * 113.51936 * 17 15 14 19 19 C 1.37876 * 119.99731 * 293.52393 * 17 15 14 20 20 N 1.31517 * 119.99970 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00146 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46888 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47273 * 119.99617 * 21 19 17 24 24 H 1.48495 * 109.47526 * 239.99884 * 21 19 17 25 25 C 1.47030 * 125.64581 * 355.39386 * 12 10 8 26 26 C 1.53105 * 109.56017 * 49.71851 * 8 7 6 27 27 C 1.50594 * 129.16435 * 180.12754 * 5 4 3 28 28 H 1.09004 * 109.46962 * 269.95152 * 1 2 3 29 29 H 1.08996 * 109.47606 * 29.95588 * 1 2 3 30 30 H 1.09002 * 109.47117 * 149.95935 * 1 2 3 31 31 H 1.08994 * 109.69684 * 43.80339 * 7 6 2 32 32 H 1.08994 * 109.72141 * 283.23806 * 7 6 2 33 33 H 1.08995 * 110.37209 * 274.74567 * 13 12 10 34 34 H 1.09001 * 110.36628 * 37.07144 * 13 12 10 35 35 H 1.08998 * 111.18894 * 279.19448 * 14 13 12 36 36 H 1.08996 * 110.93751 * 155.28963 * 14 13 12 37 37 H 0.96692 * 113.99871 * 66.38752 * 16 15 14 38 38 H 0.97006 * 119.99815 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.88118 * 300.43470 * 25 12 10 40 40 H 1.08991 * 109.88365 * 61.60317 * 25 12 10 41 41 H 1.09000 * 109.45115 * 49.97781 * 26 8 7 42 42 H 1.08992 * 109.45390 * 169.91277 * 26 8 7 43 43 H 1.08997 * 109.69551 * 283.13047 * 27 5 4 44 44 H 1.09002 * 109.69198 * 43.71575 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6942 0.0005 5 6 3.5327 -0.6331 0.0015 6 6 2.2550 -1.0872 -0.0005 7 6 1.8721 -2.5430 -0.0033 8 6 3.1008 -3.3642 -0.4160 9 1 3.3121 -3.1956 -1.4719 10 6 2.8262 -4.8281 -0.1866 11 8 2.1313 -5.1762 0.7445 12 7 3.3485 -5.7503 -1.0192 13 6 3.2469 -7.2118 -0.8550 14 6 3.4191 -7.7824 -2.2874 15 6 4.4859 -6.8219 -2.8762 16 8 5.8016 -7.2235 -2.4894 17 6 4.3712 -6.7534 -4.3773 18 1 4.0656 -5.8339 -4.8542 19 6 4.6562 -7.8648 -5.1418 20 7 5.0287 -8.9845 -4.5611 21 14 4.5134 -7.7803 -7.0024 22 1 4.0789 -6.4183 -7.4041 23 1 5.8329 -8.0800 -7.6143 24 1 3.5144 -8.7755 -7.4680 25 6 4.1194 -5.4653 -2.2383 26 6 4.3090 -2.9347 0.4205 27 6 4.7468 -1.5241 0.0050 28 1 -0.3633 -0.0009 1.0277 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 1.0635 -2.7088 -0.7150 32 1 1.5499 -2.8405 0.9946 33 1 4.0392 -7.5762 -0.2013 34 1 2.2696 -7.4816 -0.4547 35 1 2.4873 -7.7233 -2.8497 36 1 3.7903 -8.8067 -2.2566 37 1 6.0804 -8.0703 -2.8638 38 1 5.2297 -9.7664 -5.0991 39 1 3.5142 -4.8811 -2.9315 40 1 5.0270 -4.9182 -1.9835 41 1 4.0379 -2.9343 1.4762 42 1 5.1302 -3.6325 0.2571 43 1 5.1833 -1.5541 -0.9933 44 1 5.4800 -1.1430 0.7158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362595607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:23 Heat of formation + Delta-G solvation = -14.115295 kcal Electronic energy + Delta-G solvation = -27688.811397 eV Core-core repulsion = 23835.001859 eV Total energy + Delta-G solvation = -3853.809538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.44619 -41.28975 -39.22147 -37.55627 -36.02761 -35.87935 -34.09154 -32.18044 -31.59416 -30.91117 -29.96000 -28.72062 -26.95318 -25.83345 -24.52109 -23.31946 -22.38107 -21.66528 -21.02112 -19.79230 -19.18043 -18.35771 -18.01245 -17.63489 -17.05273 -16.88713 -16.30892 -15.85907 -15.60458 -15.46163 -14.95512 -14.82648 -14.72951 -14.65651 -14.14037 -13.87784 -13.79617 -13.64721 -13.46891 -13.23089 -13.15120 -13.11115 -12.89184 -12.64707 -12.57329 -12.36455 -12.23493 -12.16607 -12.04144 -11.88572 -11.59903 -11.26709 -10.95554 -10.81895 -10.57601 -10.08229 -9.88163 -9.58670 -8.21709 -6.35368 0.52092 1.39590 1.43601 1.45267 1.49167 1.57356 1.59456 2.03114 2.41809 3.04424 3.11060 3.35122 3.61498 3.71702 3.77733 3.83606 3.89772 4.05207 4.17499 4.23286 4.25750 4.28946 4.39486 4.41109 4.47521 4.56063 4.60833 4.64239 4.74983 4.85174 4.88183 4.93730 5.00809 5.04730 5.14835 5.21210 5.27721 5.32019 5.48328 5.52482 5.61127 5.81068 6.07348 6.58035 6.71658 7.11772 7.36010 7.43304 7.47801 8.84623 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017448 B = 0.003295 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.405774 B = 8494.418573 C = 8985.105377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.276 5.276 3 N -0.125 5.125 4 N -0.297 5.297 5 C -0.032 4.032 6 C -0.012 4.012 7 C -0.019 4.019 8 C -0.093 4.093 9 H 0.106 0.894 10 C 0.535 3.465 11 O -0.580 6.580 12 N -0.608 5.608 13 C 0.110 3.890 14 C -0.129 4.129 15 C 0.233 3.767 16 O -0.593 6.593 17 C -0.555 4.555 18 H 0.064 0.936 19 C 0.033 3.967 20 N -0.912 5.912 21 Si 0.957 3.043 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.121 3.879 26 C -0.099 4.099 27 C -0.025 4.025 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.381 0.619 38 H 0.270 0.730 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 11.021 7.023 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.069 5.069 3 N -0.102 5.102 4 N -0.160 5.160 5 C -0.173 4.173 6 C -0.147 4.147 7 C -0.059 4.059 8 C -0.114 4.114 9 H 0.124 0.876 10 C 0.325 3.675 11 O -0.461 6.461 12 N -0.339 5.339 13 C -0.012 4.012 14 C -0.168 4.168 15 C 0.193 3.807 16 O -0.403 6.403 17 C -0.593 4.593 18 H 0.083 0.917 19 C -0.167 4.167 20 N -0.552 5.552 21 Si 0.784 3.216 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.001 4.001 26 C -0.138 4.138 27 C -0.064 4.064 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.866 12.897 7.842 17.020 hybrid contribution -0.133 -1.968 -1.390 2.413 sum -7.999 10.929 6.451 15.002 Atomic orbital electron populations 1.22767 0.69975 1.07748 1.06888 1.47187 1.10708 1.03724 1.45234 1.78469 0.96322 1.12349 1.23084 1.74729 1.10395 1.13138 1.17762 1.22105 0.96351 0.91024 1.07783 1.21874 0.91106 0.92559 1.09177 1.19939 0.97378 0.83935 1.04638 1.21269 0.97382 0.89225 1.03558 0.87623 1.20451 0.78382 0.87979 0.80714 1.90639 1.40216 1.82684 1.32609 1.48669 1.53088 1.06900 1.25290 1.22260 1.00805 0.79977 0.98199 1.23166 1.00225 1.00354 0.93016 1.19620 0.80432 0.89066 0.91608 1.86069 1.34100 1.44486 1.75627 1.21856 1.47194 0.98179 0.92093 0.91730 1.25613 0.93560 0.94784 1.02789 1.69658 1.46224 1.02192 1.37135 0.85515 0.77552 0.78178 0.80393 1.19305 1.20842 1.20836 1.22085 0.95020 0.98134 0.84879 1.21490 0.96276 0.96254 0.99750 1.19979 0.92037 0.90246 1.04149 0.87112 0.86619 0.86138 0.88122 0.88201 0.92225 0.91194 0.92316 0.91357 0.76753 0.92040 0.89831 0.90816 0.90663 0.89678 0.88681 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 11.27 127.77 1.44 2.07 16 2 N -0.28 -5.79 3.73 -356.41 -1.33 -7.12 16 3 N -0.12 -3.44 13.19 37.02 0.49 -2.96 16 4 N -0.30 -8.92 12.40 -48.99 -0.61 -9.53 16 5 C -0.03 -0.80 7.11 41.75 0.30 -0.51 16 6 C -0.01 -0.27 6.76 41.50 0.28 0.01 16 7 C -0.02 -0.39 5.09 29.94 0.15 -0.24 16 8 C -0.09 -2.17 2.19 -11.36 -0.02 -2.20 16 9 H 0.11 2.38 6.93 -2.39 -0.02 2.36 16 10 C 0.53 16.61 6.83 87.66 0.60 17.21 16 11 O -0.58 -20.90 16.29 -3.05 -0.05 -20.95 16 12 N -0.61 -20.86 3.32 -811.34 -2.70 -23.56 16 13 C 0.11 4.05 6.93 86.94 0.60 4.65 16 14 C -0.13 -5.36 5.69 32.06 0.18 -5.17 16 15 C 0.23 10.21 0.85 -10.35 -0.01 10.20 16 16 O -0.59 -27.90 13.09 -148.98 -1.95 -29.85 16 17 C -0.55 -26.57 8.21 25.60 0.21 -26.36 16 18 H 0.06 3.03 7.53 -2.92 -0.02 3.00 16 19 C 0.03 1.60 5.28 84.65 0.45 2.05 16 20 N -0.91 -44.98 10.70 21.45 0.23 -44.75 16 21 Si 0.96 39.05 29.54 68.60 2.03 41.08 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 25 C 0.12 4.37 5.36 86.73 0.47 4.83 16 26 C -0.10 -2.13 5.19 30.77 0.16 -1.97 16 27 C -0.03 -0.52 6.30 29.96 0.19 -0.33 16 28 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.12 0.67 7.71 -2.39 -0.02 0.66 16 31 H 0.10 1.69 7.87 -2.39 -0.02 1.67 16 32 H 0.10 2.10 7.51 -2.39 -0.02 2.08 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.47 7.99 -2.39 -0.02 2.45 16 35 H 0.06 2.49 8.04 -2.39 -0.02 2.48 16 36 H 0.07 3.04 7.77 -2.39 -0.02 3.02 16 37 H 0.38 18.70 6.98 -74.06 -0.52 18.18 16 38 H 0.27 12.77 8.31 -92.70 -0.77 12.00 16 39 H 0.08 2.82 7.39 -2.39 -0.02 2.81 16 40 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 41 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 42 H 0.08 1.84 8.11 -2.39 -0.02 1.83 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -62.62 355.69 1.61 -61.00 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.51 Total: 32.40 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 4.99 Total: 4.24 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -3.92 Total: -87.92 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -2.00 Total: -50.80 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -62.62 1.61 -61.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362595607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.890 kcal (2) G-P(sol) polarization free energy of solvation -62.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds