Wall clock time and date at job start Tue Mar 31 2020 05:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28387 * 119.10721 * 2 1 4 4 C 1.31396 * 122.26795 * 180.25571 * 3 2 1 5 5 C 1.47882 * 119.89811 * 179.74450 * 4 3 2 6 6 O 1.21547 * 120.00654 * 179.72522 * 5 4 3 7 7 N 1.34782 * 119.99460 * 359.72584 * 5 4 3 8 8 C 1.46508 * 119.99558 * 179.97438 * 7 5 4 9 9 H 1.08993 * 110.05564 * 33.58409 * 8 7 5 10 10 C 1.54370 * 110.04371 * 272.10711 * 8 7 5 11 11 C 1.54889 * 104.19702 * 217.09157 * 10 8 7 12 12 C 1.54892 * 102.74596 * 37.97329 * 11 10 8 13 13 C 1.53874 * 110.02808 * 154.99981 * 8 7 5 14 14 H 1.08993 * 110.03170 * 238.61403 * 13 8 7 15 15 C 1.53002 * 110.03614 * 0.02562 * 13 8 7 16 16 N 1.46499 * 109.47337 * 184.30955 * 15 13 8 17 17 C 1.36935 * 119.99938 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00083 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99632 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99535 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00484 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00576 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00326 * 21 19 17 24 24 H 1.48498 * 109.47210 * 150.00037 * 21 19 17 25 25 C 1.41582 * 120.21067 * 359.46921 * 4 3 2 26 26 C 1.36326 * 118.24075 * 0.25321 * 25 4 3 27 27 C 1.34617 * 119.09412 * 179.72535 * 2 1 3 28 28 O 1.21978 * 120.22508 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.46962 * 270.28267 * 1 2 3 30 30 H 1.09009 * 109.46663 * 30.27564 * 1 2 3 31 31 H 1.08994 * 109.47579 * 150.27366 * 1 2 3 32 32 H 0.96995 * 120.00318 * 359.97438 * 7 5 4 33 33 H 1.09004 * 110.45971 * 98.42702 * 10 8 7 34 34 H 1.09002 * 110.62692 * 335.84019 * 10 8 7 35 35 H 1.09000 * 110.75919 * 279.65737 * 11 10 8 36 36 H 1.09002 * 110.75695 * 156.28481 * 11 10 8 37 37 H 1.09006 * 110.48646 * 203.37826 * 12 11 10 38 38 H 1.08999 * 110.60180 * 80.79105 * 12 11 10 39 39 H 1.08993 * 109.47262 * 64.30272 * 15 13 8 40 40 H 1.09005 * 109.46767 * 304.30887 * 15 13 8 41 41 H 0.96999 * 119.99984 * 0.02562 * 16 15 13 42 42 H 0.97005 * 119.99717 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.87945 * 180.27252 * 25 4 3 44 44 H 1.08001 * 121.03872 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0896 1.1217 0.0000 4 6 3.4015 1.1942 -0.0050 5 6 4.0668 2.5149 -0.0104 6 8 5.2803 2.5842 -0.0099 7 7 3.3275 3.6418 -0.0159 8 6 3.9866 4.9502 -0.0207 9 1 4.9170 4.8980 -0.5859 10 6 4.2708 5.4048 1.4269 11 6 4.0256 6.9340 1.4000 12 6 2.8050 7.0678 0.4558 13 6 3.0541 6.0078 -0.6370 14 1 3.5317 6.4682 -1.5018 15 6 1.7304 5.3619 -1.0512 16 7 0.8932 6.3551 -1.7286 17 6 -0.3464 6.0039 -2.1923 18 1 -0.7068 4.9946 -2.0590 19 6 -1.1394 6.9449 -2.8346 20 7 -2.3312 6.6074 -3.2799 21 14 -0.5158 8.6905 -3.0659 22 1 -0.9138 9.5171 -1.8982 23 1 0.9648 8.6760 -3.1804 24 1 -1.1024 9.2659 -4.3028 25 6 4.1803 0.0118 0.0008 26 6 3.5322 -1.1875 0.0062 27 6 2.1196 -1.1763 0.0056 28 8 1.4972 -2.2253 0.0102 29 1 -0.3633 0.0051 1.0277 30 1 -0.3633 0.8876 -0.5182 31 1 -0.3634 -0.8924 -0.5095 32 1 2.3591 3.5865 -0.0166 33 1 5.3042 5.1889 1.6982 34 1 3.5856 4.9208 2.1229 35 1 4.8899 7.4567 0.9904 36 1 3.7854 7.3043 2.3966 37 1 2.7687 8.0655 0.0182 38 1 1.8803 6.8533 0.9915 39 1 1.2128 4.9938 -0.1655 40 1 1.9279 4.5307 -1.7282 41 1 1.2174 7.2613 -1.8493 42 1 -2.8855 7.2651 -3.7284 43 1 5.2594 0.0588 0.0012 44 1 4.0816 -2.1173 0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496920721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:04 Heat of formation + Delta-G solvation = 13.671198 kcal Electronic energy + Delta-G solvation = -27185.987570 eV Core-core repulsion = 23333.382945 eV Total energy + Delta-G solvation = -3852.604625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.38143 -40.22300 -38.41164 -37.81190 -35.15967 -34.59227 -33.86731 -31.78445 -31.60003 -29.11134 -28.84438 -27.54718 -25.45006 -24.74269 -23.91670 -22.26071 -21.71079 -20.63770 -19.34075 -18.96855 -18.32896 -17.56993 -17.06625 -16.98829 -16.34692 -15.94981 -15.36436 -15.10276 -14.78986 -14.45110 -14.21032 -13.94828 -13.86031 -13.67698 -13.54029 -13.28760 -12.89159 -12.79714 -12.72073 -12.33334 -11.91121 -11.88934 -11.68348 -11.05097 -11.00490 -10.96405 -10.76171 -10.59498 -10.57010 -10.45599 -10.34021 -10.09460 -10.04550 -9.64606 -9.16473 -8.94865 -8.83233 -7.29773 -5.82443 -3.18239 0.13803 0.85050 1.82486 2.57166 2.92492 3.28630 3.33278 3.35817 3.41747 3.64658 4.31301 4.43306 4.46174 4.54326 4.62264 4.66208 4.93957 5.00682 5.02425 5.24681 5.25302 5.33929 5.39717 5.42824 5.45697 5.50822 5.56543 5.58898 5.68461 5.69835 5.74073 5.83392 5.93342 6.01270 6.12891 6.26440 6.39748 6.44532 6.54164 6.63766 7.18714 7.37271 7.67886 7.92319 8.01210 8.36327 9.15189 9.87682 10.07253 11.35805 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003952 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.365544 B = 7083.435477 C = 9121.510320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.333 5.333 3 N -0.173 5.173 4 C 0.014 3.986 5 C 0.589 3.411 6 O -0.533 6.533 7 N -0.701 5.701 8 C 0.148 3.852 9 H 0.095 0.905 10 C -0.132 4.132 11 C -0.124 4.124 12 C -0.116 4.116 13 C -0.113 4.113 14 H 0.083 0.917 15 C 0.161 3.839 16 N -0.752 5.752 17 C -0.246 4.246 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.277 1.277 24 H -0.291 1.291 25 C -0.030 4.030 26 C -0.194 4.194 27 C 0.479 3.521 28 O -0.526 6.526 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.416 0.584 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.027 0.973 40 H 0.030 0.970 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.164 0.836 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.753 -8.972 10.401 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.155 5.155 3 N -0.004 5.004 4 C -0.157 4.157 5 C 0.371 3.629 6 O -0.408 6.408 7 N -0.355 5.355 8 C 0.044 3.956 9 H 0.113 0.887 10 C -0.171 4.171 11 C -0.162 4.162 12 C -0.154 4.154 13 C -0.132 4.132 14 H 0.102 0.898 15 C 0.033 3.967 16 N -0.398 5.398 17 C -0.375 4.375 18 H 0.107 0.893 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.203 1.203 24 H -0.217 1.217 25 C -0.053 4.053 26 C -0.224 4.224 27 C 0.278 3.722 28 O -0.404 6.404 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.256 0.744 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.181 0.819 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.229 -9.172 10.337 19.131 hybrid contribution 0.363 0.661 -0.326 0.822 sum 13.592 -8.511 10.010 18.905 Atomic orbital electron populations 1.22373 0.72915 1.06403 1.05033 1.46784 1.10204 1.02477 1.56013 1.71115 1.11177 1.12780 1.05321 1.21782 0.88203 0.96358 1.09358 1.17212 0.86344 0.82383 0.76918 1.90800 1.12648 1.86478 1.50889 1.46294 1.11640 1.05030 1.72498 1.21752 0.96362 0.80824 0.96707 0.88735 1.22794 1.01891 0.96198 0.96207 1.22477 0.98461 0.95391 0.99827 1.22415 0.98314 0.98681 0.95986 1.22290 0.96764 0.95473 0.98708 0.89816 1.20669 0.88468 0.92461 0.95098 1.42663 1.17491 1.09315 1.70282 1.19028 0.90356 0.97971 1.30193 0.89253 1.24662 0.96181 0.97719 1.00426 1.69701 1.10028 1.34145 1.44217 0.86560 0.78165 0.86285 0.77600 1.21021 1.20315 1.21739 1.22224 1.03028 0.90285 0.89773 1.22672 0.92659 1.00435 1.06587 1.18126 0.90158 0.83976 0.79975 1.90977 1.69289 1.29388 1.50775 0.89531 0.87566 0.87814 0.74351 0.91185 0.91084 0.91446 0.91447 0.91508 0.90628 0.95506 0.95261 0.80541 0.93030 0.81878 0.81384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.58 59.85 0.63 1.30 16 2 N -0.33 -3.83 3.62 -70.15 -0.25 -4.08 16 3 N -0.17 -2.03 10.10 33.41 0.34 -1.70 16 4 C 0.01 0.16 6.84 -82.83 -0.57 -0.40 16 5 C 0.59 7.46 7.80 -12.31 -0.10 7.37 16 6 O -0.53 -7.69 16.04 5.32 0.09 -7.60 16 7 N -0.70 -8.70 4.39 -53.59 -0.24 -8.94 16 8 C 0.15 1.81 3.23 -66.75 -0.22 1.59 16 9 H 0.09 1.19 7.56 -51.93 -0.39 0.80 16 10 C -0.13 -1.42 6.53 -25.02 -0.16 -1.58 16 11 C -0.12 -1.27 6.91 -24.74 -0.17 -1.44 16 12 C -0.12 -1.49 6.05 -25.07 -0.15 -1.64 16 13 C -0.11 -1.56 2.97 -89.50 -0.27 -1.83 16 14 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.16 2.80 4.18 -4.04 -0.02 2.78 16 16 N -0.75 -16.77 5.24 -59.91 -0.31 -17.09 16 17 C -0.25 -6.65 10.47 -15.06 -0.16 -6.81 16 18 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 21 Si 0.88 21.46 27.74 -169.99 -4.71 16.74 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C -0.03 -0.28 9.67 -39.00 -0.38 -0.66 16 26 C -0.19 -1.86 10.11 -39.12 -0.40 -2.26 16 27 C 0.48 5.87 7.47 -15.18 -0.11 5.76 16 28 O -0.53 -7.79 16.62 4.94 0.08 -7.71 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.10 0.93 7.36 -51.93 -0.38 0.55 16 32 H 0.42 5.27 5.22 -40.82 -0.21 5.05 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.05 7.77 -51.93 -0.40 0.65 16 39 H 0.03 0.47 7.08 -51.93 -0.37 0.10 16 40 H 0.03 0.53 7.46 -51.93 -0.39 0.15 16 41 H 0.36 7.93 5.39 -40.82 -0.22 7.71 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.16 1.24 7.72 -52.48 -0.41 0.83 16 44 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -33.47 361.81 -7.10 -40.57 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.16 Total: 9.87 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.15 Total: 2.26 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.31 Total: -59.58 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.17 Total: -15.31 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.47 -7.10 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496920721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.238 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds