Wall clock time and date at job start Tue Mar 31 2020 05:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 120.00126 * 2 1 4 4 O 1.21583 * 119.99717 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00308 * 180.02562 * 3 2 1 6 6 C 1.46491 * 120.00091 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.46957 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47492 * 295.00479 * 11 10 9 13 13 N 1.46504 * 109.46848 * 55.00180 * 11 10 9 14 14 C 1.36939 * 120.00057 * 204.99992 * 13 11 10 15 15 H 1.07998 * 119.99529 * 0.02562 * 14 13 11 16 16 C 1.38813 * 119.99778 * 180.02562 * 14 13 11 17 17 N 1.31613 * 120.00123 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99723 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47233 * 89.99974 * 18 16 14 20 20 H 1.48502 * 109.46958 * 210.00295 * 18 16 14 21 21 H 1.48502 * 109.47229 * 330.00059 * 18 16 14 22 22 C 1.50693 * 109.47427 * 175.00057 * 11 10 9 23 23 C 1.38240 * 120.00175 * 279.73060 * 22 11 10 24 24 C 1.38236 * 119.99724 * 179.78862 * 23 22 11 25 25 C 1.38238 * 120.00408 * 0.43789 * 24 23 22 26 26 C 1.38236 * 119.99660 * 359.81556 * 25 24 23 27 27 C 1.38238 * 120.00190 * 359.97398 * 26 25 24 28 28 H 1.08998 * 109.47287 * 59.99653 * 1 2 3 29 29 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 299.99524 * 1 2 3 31 31 H 0.97005 * 120.00111 * 180.02562 * 2 1 3 32 32 H 0.97003 * 119.99349 * 0.02562 * 5 3 2 33 33 H 1.09004 * 109.47166 * 60.00164 * 6 5 3 34 34 H 1.08994 * 109.47507 * 299.99870 * 6 5 3 35 35 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 36 36 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 37 37 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 38 38 H 0.97003 * 120.00175 * 25.00060 * 13 11 10 39 39 H 0.97009 * 119.99761 * 180.02562 * 17 16 14 40 40 H 1.07998 * 119.99588 * 359.97438 * 23 22 11 41 41 H 1.08006 * 119.99838 * 180.27569 * 24 23 22 42 42 H 1.07996 * 119.99853 * 179.83484 * 25 24 23 43 43 H 1.07996 * 119.99951 * 180.02562 * 26 25 24 44 44 H 1.08000 * 119.99953 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4358 -0.0011 7 6 5.7008 2.1605 -0.0010 8 8 6.1051 1.0170 -0.0009 9 7 6.5766 3.1848 -0.0071 10 6 8.0169 2.9172 -0.0130 11 6 8.7819 4.2421 -0.0186 12 1 8.5834 4.7725 -0.9499 13 7 8.3451 5.0630 1.1135 14 6 8.4674 6.4258 1.0587 15 1 8.8856 6.8954 0.1807 16 6 8.0539 7.2035 2.1316 17 7 7.5448 6.6310 3.2018 18 14 8.2202 9.0625 2.0565 19 1 6.9842 9.6470 1.4767 20 1 8.4250 9.5970 3.4268 21 1 9.3835 9.4216 1.2062 22 6 10.2594 3.9697 0.0991 23 6 10.8161 3.6992 1.3352 24 6 12.1706 3.4450 1.4425 25 6 12.9701 3.4701 0.3150 26 6 12.4142 3.7457 -0.9203 27 6 11.0589 3.9957 -1.0283 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 3.9716 0.3271 -0.0013 33 1 3.9562 3.0076 0.8889 34 1 3.9555 3.0072 -0.8910 35 1 6.2533 4.0994 -0.0074 36 1 8.2842 2.3474 0.8769 37 1 8.2762 2.3437 -0.9030 38 1 7.9691 4.6411 1.9020 39 1 7.2555 7.1745 3.9514 40 1 10.1922 3.6836 2.2166 41 1 12.6048 3.2293 2.4076 42 1 14.0287 3.2741 0.3993 43 1 13.0387 3.7649 -1.8013 44 1 10.6248 4.2114 -1.9934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753298317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:05 Heat of formation + Delta-G solvation = -25.711089 kcal Electronic energy + Delta-G solvation = -26120.158812 eV Core-core repulsion = 22265.846442 eV Total energy + Delta-G solvation = -3854.312369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26067 -39.38717 -38.76703 -36.04949 -34.79403 -34.36503 -33.68834 -32.07749 -30.44565 -29.61053 -29.05532 -27.26743 -25.63566 -23.70812 -22.75779 -21.96084 -21.00254 -20.38254 -19.98254 -18.94227 -17.49376 -16.88524 -16.58393 -16.10732 -16.04234 -15.58505 -15.28515 -14.86250 -14.70173 -14.44675 -14.19743 -14.09641 -13.74147 -13.35655 -13.21945 -12.93534 -12.88894 -12.78991 -12.53797 -12.44001 -12.25509 -11.95515 -11.17051 -10.98087 -10.86889 -10.75613 -10.50069 -10.37458 -10.16783 -9.88844 -9.80778 -9.46471 -9.11431 -9.01535 -8.80079 -8.44098 -8.22730 -7.17141 -5.89589 -3.21376 1.82410 1.89470 2.48635 2.69877 3.12051 3.37097 3.43576 3.44676 3.45220 4.19652 4.26998 4.48487 4.83059 4.97891 5.19695 5.31173 5.32212 5.37418 5.37475 5.42989 5.45804 5.51820 5.56287 5.58721 5.72612 5.81071 5.99951 6.05529 6.19369 6.25519 6.28913 6.36510 6.44357 6.59200 6.64246 6.77220 6.90080 6.98582 7.24526 7.49448 7.61331 7.70310 7.88810 8.26141 8.32137 8.48692 9.39640 9.88388 10.24826 11.31636 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.003201 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.369539 B = 8745.509345 C =10903.979088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.752 5.752 3 C 0.704 3.296 4 O -0.590 6.590 5 N -0.732 5.732 6 C 0.119 3.881 7 C 0.508 3.492 8 O -0.554 6.554 9 N -0.705 5.705 10 C 0.121 3.879 11 C 0.198 3.802 12 H 0.066 0.934 13 N -0.714 5.714 14 C -0.246 4.246 15 H 0.071 0.929 16 C -0.004 4.004 17 N -0.927 5.927 18 Si 0.906 3.094 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.082 4.082 23 C -0.083 4.083 24 C -0.128 4.128 25 C -0.134 4.134 26 C -0.130 4.130 27 C -0.120 4.120 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.398 0.602 32 H 0.407 0.593 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.415 0.585 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.387 0.613 39 H 0.257 0.743 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 -13.404 -7.723 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.407 5.407 3 C 0.404 3.596 4 O -0.468 6.468 5 N -0.391 5.391 6 C -0.010 4.010 7 C 0.294 3.706 8 O -0.433 6.433 9 N -0.357 5.357 10 C -0.003 4.003 11 C 0.087 3.913 12 H 0.084 0.916 13 N -0.355 5.355 14 C -0.377 4.377 15 H 0.089 0.911 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.736 3.264 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.086 4.086 23 C -0.101 4.101 24 C -0.146 4.146 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.139 4.139 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.231 0.769 32 H 0.244 0.756 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.252 0.748 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.222 0.778 39 H 0.067 0.933 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.558 -13.007 -7.735 15.546 hybrid contribution 0.519 0.725 0.426 0.988 sum -3.039 -12.282 -7.309 14.612 Atomic orbital electron populations 1.21384 0.78097 1.01856 1.02337 1.44870 1.07727 1.07152 1.80994 1.15851 0.81472 0.84362 0.77950 1.90950 1.67919 1.30212 1.57750 1.44714 1.04548 1.09779 1.80064 1.20898 0.88366 0.86503 1.05185 1.20408 0.88338 0.85478 0.76418 1.90655 1.80034 1.21407 1.51241 1.45858 1.06607 1.10054 1.73132 1.21621 0.78963 0.97685 1.02044 1.19480 0.87897 0.90029 0.93926 0.91573 1.42462 1.73541 1.03292 1.16189 1.19170 1.35374 0.82201 1.00915 0.91069 1.24722 1.01152 0.97955 0.96267 1.69648 1.47099 1.34436 1.06266 0.86223 0.77743 0.85596 0.76789 1.21556 1.21783 1.20762 1.20977 0.98172 0.96528 0.92951 1.21009 0.94552 0.96757 0.97815 1.21112 0.94286 1.01150 0.98055 1.20987 0.99101 1.02024 0.93103 1.20986 0.95193 1.01471 0.97170 1.21013 0.93700 1.01038 0.98131 0.92393 0.90741 0.92324 0.76859 0.75613 0.88047 0.88456 0.74819 0.91412 0.91334 0.77849 0.93325 0.85890 0.86852 0.87082 0.86989 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.82 10.70 59.85 0.64 1.46 16 2 N -0.75 -6.92 5.72 -72.07 -0.41 -7.33 16 3 C 0.70 9.32 8.57 -86.92 -0.74 8.58 16 4 O -0.59 -10.19 16.34 5.29 0.09 -10.10 16 5 N -0.73 -8.96 5.53 -66.42 -0.37 -9.32 16 6 C 0.12 1.54 6.15 -5.20 -0.03 1.50 16 7 C 0.51 7.41 7.90 -10.98 -0.09 7.32 16 8 O -0.55 -9.27 15.67 5.55 0.09 -9.19 16 9 N -0.70 -10.46 5.39 -60.29 -0.32 -10.79 16 10 C 0.12 1.90 5.21 -4.04 -0.02 1.88 16 11 C 0.20 3.46 2.65 -69.08 -0.18 3.28 16 12 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 13 N -0.71 -15.49 3.79 -54.55 -0.21 -15.69 16 14 C -0.25 -6.16 9.92 -15.06 -0.15 -6.31 16 15 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 16 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 17 N -0.93 -26.04 13.06 55.49 0.72 -25.32 16 18 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.08 -1.43 4.92 -104.62 -0.52 -1.95 16 23 C -0.08 -1.48 9.33 -39.58 -0.37 -1.85 16 24 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 25 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 26 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 27 C -0.12 -1.86 9.67 -39.58 -0.38 -2.24 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.40 2.50 8.84 -40.82 -0.36 2.14 16 32 H 0.41 4.52 7.45 -40.82 -0.30 4.22 16 33 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.41 6.24 8.14 -40.82 -0.33 5.91 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.39 9.09 7.80 -40.82 -0.32 8.77 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.12 2.35 7.71 -52.49 -0.40 1.95 16 41 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 42 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 43 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.11 1.55 8.04 -52.49 -0.42 1.13 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -32.29 380.25 -9.17 -41.46 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -6.33 Total: 19.69 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -3.13 Total: 4.46 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.59 Total: -68.45 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.17 Total: -19.29 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.29 -9.17 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753298317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.746 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds