Wall clock time and date at job start Tue Mar 31 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.37922 * 120.33893 * 265.00262 * 3 2 1 5 5 N 1.32149 * 121.72857 * 180.02562 * 4 3 2 6 6 C 1.32211 * 121.78454 * 0.02562 * 5 4 3 7 7 C 1.40615 * 120.10734 * 359.97438 * 6 5 4 8 8 C 1.39745 * 120.33802 * 84.72649 * 3 2 1 9 9 S 1.76203 * 121.17603 * 359.97438 * 8 3 2 10 10 C 1.76199 * 100.00087 * 89.99788 * 9 8 3 11 11 H 1.07996 * 120.00188 * 0.02562 * 10 9 8 12 12 C 1.38855 * 119.99894 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99857 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47491 * 89.99980 * 14 12 10 16 16 H 1.48503 * 109.47112 * 209.99585 * 14 12 10 17 17 H 1.48500 * 109.47364 * 329.99936 * 14 12 10 18 18 C 1.46784 * 118.61475 * 180.02562 * 7 6 5 19 19 O 1.21656 * 120.88762 * 180.02562 * 18 7 6 20 20 N 1.35127 * 118.22374 * 359.95848 * 18 7 6 21 21 C 1.46502 * 119.45895 * 180.02562 * 20 18 7 22 22 C 1.34241 * 121.07955 * 0.04381 * 20 18 7 23 23 O 1.21572 * 118.55575 * 180.02562 * 22 20 18 24 24 N 1.34366 * 122.88562 * 359.97438 * 22 20 18 25 25 C 1.46493 * 119.62868 * 180.02562 * 24 22 20 26 26 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 31 31 H 1.07994 * 119.13324 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99959 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.46686 * 180.02562 * 21 20 18 34 34 H 1.08990 * 109.46824 * 300.01432 * 21 20 18 35 35 H 1.08997 * 109.47305 * 60.02321 * 21 20 18 36 36 H 1.09001 * 109.47469 * 269.97856 * 25 24 22 37 37 H 1.09005 * 109.47758 * 29.98336 * 25 24 22 38 38 H 1.09007 * 109.47225 * 149.97762 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3623 2.0431 -1.1858 5 7 2.8058 3.2876 -1.2177 6 6 2.9570 4.0014 -0.1152 7 6 2.6432 3.4418 1.1360 8 6 2.1631 2.1233 1.2010 9 16 1.7481 1.3787 2.7431 10 6 3.3049 0.6727 3.1707 11 1 4.1514 0.7920 2.5109 12 6 3.4434 -0.0361 4.3567 13 7 4.6055 -0.5625 4.6761 14 14 1.9794 -0.2418 5.4984 15 1 1.2390 -1.4771 5.1364 16 1 2.4560 -0.3435 6.9011 17 1 1.0791 0.9317 5.3653 18 6 2.8229 4.2639 2.3388 19 8 2.5646 3.8212 3.4421 20 7 3.2842 5.5250 2.1878 21 6 3.4742 6.3690 3.3701 22 6 3.5708 6.0172 0.9722 23 8 3.9835 7.1577 0.8896 24 7 3.4225 5.3043 -0.1570 25 6 3.7578 5.9127 -1.4468 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.2555 1.4991 -2.1126 32 1 4.7022 -1.0580 5.5044 33 1 3.8485 7.3456 3.0629 34 1 2.5220 6.4909 3.8862 35 1 4.1934 5.8986 4.0406 36 1 2.8760 6.4055 -1.8563 37 1 4.5520 6.6461 -1.3072 38 1 4.0950 5.1391 -2.1368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010216632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:34 Heat of formation + Delta-G solvation = -1.788997 kcal Electronic energy + Delta-G solvation = -25441.546053 eV Core-core repulsion = 21797.472137 eV Total energy + Delta-G solvation = -3644.073915 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.10736 -39.71425 -38.76668 -36.38291 -34.99473 -33.90091 -32.57857 -32.19054 -29.34550 -28.29586 -26.61858 -25.78119 -24.48891 -24.36504 -22.37787 -21.84291 -19.96272 -18.34141 -17.88740 -17.49307 -17.01018 -16.02440 -15.94580 -15.25033 -15.11974 -15.03632 -14.78503 -14.18717 -14.16285 -13.88797 -13.55926 -13.07054 -12.94609 -12.88458 -12.73007 -12.33670 -12.28257 -12.09039 -11.54660 -11.34990 -11.27729 -11.16340 -10.82999 -10.65292 -10.37969 -10.33332 -10.02246 -9.82892 -9.55399 -9.41582 -9.07035 -8.66942 -8.09431 -6.89999 -6.39366 -4.09646 0.66767 1.08929 1.98528 2.26762 2.59428 3.01423 3.08246 3.20489 3.37449 3.38783 3.92420 4.10875 4.20929 4.43864 4.76782 4.85252 4.99112 5.04810 5.20704 5.25156 5.30874 5.34318 5.41483 5.49901 5.60619 5.62111 5.68686 5.71242 5.81157 5.84617 5.99495 6.01407 6.26567 6.41824 6.53990 6.60566 6.76980 7.31419 7.66478 7.81166 7.83211 8.12815 8.33323 9.03462 10.69809 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.006230 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.794691 B = 4493.648732 C = 5967.081448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.130 4.130 4 C 0.157 3.843 5 N -0.512 5.512 6 C 0.380 3.620 7 C -0.206 4.206 8 C 0.053 3.947 9 S -0.057 6.057 10 C -0.505 4.505 11 H 0.090 0.910 12 C 0.102 3.898 13 N -0.872 5.872 14 Si 0.850 3.150 15 H -0.265 1.265 16 H -0.271 1.271 17 H -0.234 1.234 18 C 0.548 3.452 19 O -0.423 6.423 20 N -0.564 5.564 21 C 0.082 3.918 22 C 0.710 3.290 23 O -0.552 6.552 24 N -0.532 5.532 25 C 0.094 3.906 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.167 0.833 32 H 0.273 0.727 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 7.355 -10.835 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.136 4.136 4 C -0.001 4.001 5 N -0.227 5.227 6 C 0.146 3.854 7 C -0.218 4.218 8 C -0.067 4.067 9 S 0.179 5.821 10 C -0.652 4.652 11 H 0.108 0.892 12 C -0.108 4.108 13 N -0.508 5.508 14 Si 0.674 3.326 15 H -0.190 1.190 16 H -0.196 1.196 17 H -0.158 1.158 18 C 0.336 3.664 19 O -0.289 6.289 20 N -0.310 5.310 21 C -0.059 4.059 22 C 0.412 3.588 23 O -0.427 6.427 24 N -0.258 5.258 25 C -0.047 4.047 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.184 0.816 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.015 8.042 -10.223 14.330 hybrid contribution 0.682 -0.409 0.612 1.003 sum -5.333 7.633 -9.611 13.382 Atomic orbital electron populations 1.21725 0.94644 1.01745 1.01819 1.20552 0.96172 0.90709 1.04417 1.21299 1.01477 0.98553 0.92292 1.22562 0.91267 0.88462 0.97851 1.67055 1.18805 1.08385 1.28425 1.18329 0.92434 0.85115 0.89525 1.20480 1.11816 0.97530 0.91950 1.22712 0.90732 0.92047 1.01176 1.82932 1.18790 1.65837 1.14510 1.22110 0.94481 1.37652 1.10924 0.89245 1.24619 0.95995 0.93893 0.96301 1.69860 1.22983 1.33607 1.24351 0.86847 0.83502 0.81011 0.81243 1.18987 1.19578 1.15823 1.18142 0.78039 0.80192 0.90066 1.91097 1.43216 1.68964 1.25631 1.46313 1.61490 1.15565 1.07680 1.21894 1.03496 0.95462 0.85072 1.15454 0.78793 0.84479 0.80031 1.90938 1.50316 1.16200 1.85211 1.44365 1.62500 1.10581 1.08325 1.21847 1.02096 0.99427 0.81351 0.91835 0.92288 0.93515 0.87836 0.91257 0.81587 0.91690 0.88288 0.90433 0.90223 0.91417 0.89422 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 37.16 0.37 -1.45 16 2 C -0.08 -1.18 5.59 -27.88 -0.16 -1.33 16 3 C -0.13 -2.14 5.18 -104.17 -0.54 -2.68 16 4 C 0.16 2.20 10.78 -17.53 -0.19 2.01 16 5 N -0.51 -7.82 9.22 -12.23 -0.11 -7.93 16 6 C 0.38 6.48 7.38 -155.19 -1.14 5.34 16 7 C -0.21 -4.05 5.90 -104.71 -0.62 -4.67 16 8 C 0.05 1.07 5.54 -38.18 -0.21 0.85 16 9 S -0.06 -1.33 15.02 -107.50 -1.61 -2.94 16 10 C -0.51 -13.95 10.01 30.96 0.31 -13.64 16 11 H 0.09 2.71 8.02 -52.49 -0.42 2.28 16 12 C 0.10 2.85 5.50 -17.46 -0.10 2.75 16 13 N -0.87 -25.52 13.96 55.49 0.77 -24.74 16 14 Si 0.85 20.55 27.74 -169.99 -4.71 15.84 16 15 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.23 -5.65 6.74 56.52 0.38 -5.26 16 18 C 0.55 11.10 7.62 -12.65 -0.10 11.00 16 19 O -0.42 -9.78 14.33 5.23 0.07 -9.71 16 20 N -0.56 -9.80 2.96 -129.76 -0.38 -10.18 16 21 C 0.08 1.15 10.01 59.85 0.60 1.75 16 22 C 0.71 11.91 8.10 -87.76 -0.71 11.20 16 23 O -0.55 -9.50 14.84 5.30 0.08 -9.42 16 24 N -0.53 -8.29 3.05 -128.33 -0.39 -8.68 16 25 C 0.09 1.10 10.13 59.84 0.61 1.70 16 26 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 1.85 7.16 -51.93 -0.37 1.47 16 30 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 31 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.10 1.25 6.76 -51.92 -0.35 0.90 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.97 7.32 -51.93 -0.38 0.59 16 38 H 0.09 1.00 7.41 -51.93 -0.38 0.61 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -32.44 333.36 -7.57 -40.01 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.43 Total: -0.11 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -1.88 Total: 12.84 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.11 Total: -51.53 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.15 Total: -19.13 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.71 Total: 15.84 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -1.61 Total: -2.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.44 -7.57 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010216632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.224 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds