Wall clock time and date at job start Tue Mar 31 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.37922 * 120.33893 * 265.00262 * 3 2 1 5 5 N 1.32149 * 121.72857 * 180.02562 * 4 3 2 6 6 C 1.32211 * 121.78454 * 0.02562 * 5 4 3 7 7 C 1.40615 * 120.10734 * 359.97438 * 6 5 4 8 8 C 1.39745 * 120.33802 * 84.72649 * 3 2 1 9 9 S 1.76203 * 121.17603 * 359.97438 * 8 3 2 10 10 C 1.76199 * 100.00087 * 89.99788 * 9 8 3 11 11 H 1.07996 * 120.00188 * 0.02562 * 10 9 8 12 12 C 1.38855 * 119.99894 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99857 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47491 * 89.99980 * 14 12 10 16 16 H 1.48503 * 109.47112 * 209.99585 * 14 12 10 17 17 H 1.48500 * 109.47364 * 329.99936 * 14 12 10 18 18 C 1.46784 * 118.61475 * 180.02562 * 7 6 5 19 19 O 1.21656 * 120.88762 * 180.02562 * 18 7 6 20 20 N 1.35127 * 118.22374 * 359.95848 * 18 7 6 21 21 C 1.46502 * 119.45895 * 180.02562 * 20 18 7 22 22 C 1.34241 * 121.07955 * 0.04381 * 20 18 7 23 23 O 1.21572 * 118.55575 * 180.02562 * 22 20 18 24 24 N 1.34366 * 122.88562 * 359.97438 * 22 20 18 25 25 C 1.46493 * 119.62868 * 180.02562 * 24 22 20 26 26 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 31 31 H 1.07994 * 119.13324 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99959 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.46686 * 180.02562 * 21 20 18 34 34 H 1.08990 * 109.46824 * 300.01432 * 21 20 18 35 35 H 1.08997 * 109.47305 * 60.02321 * 21 20 18 36 36 H 1.09001 * 109.47469 * 269.97856 * 25 24 22 37 37 H 1.09005 * 109.47758 * 29.98336 * 25 24 22 38 38 H 1.09007 * 109.47225 * 149.97762 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3623 2.0431 -1.1858 5 7 2.8058 3.2876 -1.2177 6 6 2.9570 4.0014 -0.1152 7 6 2.6432 3.4418 1.1360 8 6 2.1631 2.1233 1.2010 9 16 1.7481 1.3787 2.7431 10 6 3.3049 0.6727 3.1707 11 1 4.1514 0.7920 2.5109 12 6 3.4434 -0.0361 4.3567 13 7 4.6055 -0.5625 4.6761 14 14 1.9794 -0.2418 5.4984 15 1 1.2390 -1.4771 5.1364 16 1 2.4560 -0.3435 6.9011 17 1 1.0791 0.9317 5.3653 18 6 2.8229 4.2639 2.3388 19 8 2.5646 3.8212 3.4421 20 7 3.2842 5.5250 2.1878 21 6 3.4742 6.3690 3.3701 22 6 3.5708 6.0172 0.9722 23 8 3.9835 7.1577 0.8896 24 7 3.4225 5.3043 -0.1570 25 6 3.7578 5.9127 -1.4468 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.2555 1.4991 -2.1126 32 1 4.7022 -1.0580 5.5044 33 1 3.8485 7.3456 3.0629 34 1 2.5220 6.4909 3.8862 35 1 4.1934 5.8986 4.0406 36 1 2.8760 6.4055 -1.8563 37 1 4.5520 6.6461 -1.3072 38 1 4.0950 5.1391 -2.1368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010216632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:33 Heat of formation + Delta-G solvation = -22.046604 kcal Electronic energy + Delta-G solvation = -25442.424488 eV Core-core repulsion = 21797.472137 eV Total energy + Delta-G solvation = -3644.952351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.46248 -41.03167 -40.24027 -37.65284 -36.43129 -35.10795 -34.72393 -33.53557 -30.51731 -29.50213 -27.94124 -27.78207 -25.85481 -25.59621 -23.74319 -23.04242 -21.34039 -19.82557 -19.65597 -18.89108 -18.35437 -17.43203 -17.35355 -17.08409 -16.62637 -16.42030 -16.05159 -15.67690 -15.56152 -15.14892 -14.97273 -14.72229 -14.22915 -14.04183 -13.95905 -13.51222 -13.43744 -13.39593 -13.21181 -13.09527 -13.04095 -12.49938 -12.12782 -12.01773 -11.83796 -11.77595 -11.57267 -11.43649 -11.13490 -10.94533 -10.78849 -10.41157 -9.38841 -8.79942 -8.53842 -6.18152 -0.74376 -0.29135 0.74594 0.82866 0.92956 1.27246 1.41939 1.48776 1.70891 1.71963 2.20636 2.49414 2.77552 2.82055 2.88165 3.19237 3.55619 3.72811 3.99474 4.08720 4.10469 4.32745 4.33930 4.35781 4.46240 4.48923 4.62921 4.67600 4.71325 4.79946 4.81785 4.95251 5.15667 5.25193 5.32092 5.53043 5.57844 5.66826 5.94972 6.06908 6.26158 6.49256 6.71477 6.88612 8.59531 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.006230 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.794691 B = 4493.648732 C = 5967.081448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 C -0.129 4.129 4 C 0.180 3.820 5 N -0.496 5.496 6 C 0.382 3.618 7 C -0.235 4.235 8 C 0.020 3.980 9 S -0.058 6.058 10 C -0.508 4.508 11 H 0.044 0.956 12 C 0.050 3.950 13 N -0.916 5.916 14 Si 0.908 3.092 15 H -0.247 1.247 16 H -0.263 1.263 17 H -0.236 1.236 18 C 0.544 3.456 19 O -0.467 6.467 20 N -0.565 5.565 21 C 0.078 3.922 22 C 0.707 3.293 23 O -0.555 6.555 24 N -0.528 5.528 25 C 0.089 3.911 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.224 0.776 32 H 0.277 0.723 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 7.720 -13.723 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 C -0.136 4.136 4 C 0.021 3.979 5 N -0.211 5.211 6 C 0.148 3.852 7 C -0.247 4.247 8 C -0.100 4.100 9 S 0.178 5.822 10 C -0.655 4.655 11 H 0.062 0.938 12 C -0.156 4.156 13 N -0.554 5.554 14 Si 0.729 3.271 15 H -0.170 1.170 16 H -0.188 1.188 17 H -0.160 1.160 18 C 0.333 3.667 19 O -0.337 6.337 20 N -0.311 5.311 21 C -0.062 4.062 22 C 0.409 3.591 23 O -0.430 6.430 24 N -0.254 5.254 25 C -0.050 4.050 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.240 0.760 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.384 8.463 -13.150 17.294 hybrid contribution 1.182 -0.438 1.253 1.777 sum -6.202 8.025 -11.898 15.634 Atomic orbital electron populations 1.21698 0.93059 1.02875 1.01813 1.20607 0.97483 0.89343 1.04386 1.21639 1.00743 0.99369 0.91816 1.23417 0.87968 0.87769 0.98740 1.67265 1.18128 1.08683 1.26976 1.18336 0.92097 0.85746 0.88987 1.20565 1.13434 0.97748 0.92955 1.22686 0.93823 0.92895 1.00591 1.82526 1.15847 1.66021 1.17824 1.22141 0.95503 1.37796 1.10077 0.93750 1.25492 0.98647 0.93632 0.97824 1.69963 1.25138 1.34979 1.25293 0.85972 0.80297 0.81504 0.79357 1.17048 1.18783 1.15964 1.18400 0.77436 0.80939 0.89898 1.91057 1.45599 1.70052 1.26962 1.46373 1.60722 1.15018 1.08942 1.22084 1.04196 0.95572 0.84339 1.15529 0.78859 0.84599 0.80103 1.90934 1.50606 1.16246 1.85264 1.44570 1.61557 1.10034 1.09220 1.22155 1.03263 0.99960 0.79666 0.94367 0.90653 0.90923 0.91756 0.87380 0.76020 0.91320 0.86643 0.89351 0.90574 0.89483 0.88854 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.89 71.98 0.71 -2.45 16 2 C -0.08 -2.18 5.59 29.85 0.17 -2.01 16 3 C -0.13 -4.04 5.18 -19.57 -0.10 -4.14 16 4 C 0.18 4.30 10.78 84.57 0.91 5.21 16 5 N -0.50 -13.38 9.22 -192.62 -1.78 -15.16 16 6 C 0.38 12.39 7.38 133.68 0.99 13.38 16 7 C -0.24 -9.32 5.90 -19.92 -0.12 -9.44 16 8 C 0.02 0.80 5.54 23.18 0.13 0.93 16 9 S -0.06 -2.82 15.02 -56.49 -0.85 -3.67 16 10 C -0.51 -29.54 10.01 67.97 0.68 -28.86 16 11 H 0.04 2.87 8.02 -2.91 -0.02 2.85 16 12 C 0.05 2.90 5.50 84.89 0.47 3.36 16 13 N -0.92 -55.83 13.96 21.65 0.30 -55.53 16 14 Si 0.91 43.52 27.74 68.60 1.90 45.42 16 15 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.24 -11.28 6.74 99.48 0.67 -10.61 16 18 C 0.54 22.73 7.62 86.42 0.66 23.38 16 19 O -0.47 -22.65 14.33 -4.21 -0.06 -22.71 16 20 N -0.57 -19.77 2.96 -801.04 -2.37 -22.14 16 21 C 0.08 2.22 10.01 127.77 1.28 3.50 16 22 C 0.71 23.03 8.10 179.35 1.45 24.49 16 23 O -0.56 -18.27 14.84 -3.94 -0.06 -18.33 16 24 N -0.53 -15.49 3.05 -678.41 -2.07 -17.56 16 25 C 0.09 1.80 10.13 127.77 1.29 3.10 16 26 H 0.04 1.07 7.87 -2.39 -0.02 1.05 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.06 2.30 7.16 -2.39 -0.02 2.29 16 30 H 0.11 2.08 8.06 -2.39 -0.02 2.06 16 31 H 0.22 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 33 H 0.12 2.85 6.76 -2.38 -0.02 2.83 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.81 7.32 -2.38 -0.02 1.80 16 38 H 0.11 1.89 7.41 -2.38 -0.02 1.87 16 Total: -1.00 -75.11 333.36 4.61 -70.51 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.06 Total: 8.72 kcal Atomic # 6 Polarization: 21.92 SS G_CDS: 8.52 Total: 30.44 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -5.91 Total: -110.39 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.12 Total: -41.04 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -0.85 Total: -3.67 kcal Total: -75.11 4.61 -70.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010216632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.462 kcal (2) G-P(sol) polarization free energy of solvation -75.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds