Wall clock time and date at job start Tue Mar 31 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99997 * 2 1 4 4 H 1.48508 * 109.46928 * 239.99783 * 3 2 1 5 5 H 1.48495 * 109.47459 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47052 * 119.99968 * 3 2 1 7 7 C 1.37882 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99217 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00163 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47009 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99888 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00139 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99980 * 180.02562 * 11 10 9 14 14 N 1.46502 * 109.47494 * 179.97438 * 13 11 10 15 15 C 1.35862 * 119.68643 * 269.98089 * 14 13 11 16 16 N 1.29845 * 123.35145 * 180.02562 * 15 14 13 17 17 C 1.35643 * 121.60050 * 359.97438 * 16 15 14 18 18 C 1.39603 * 121.70231 * 179.97438 * 17 16 15 19 19 C 1.37845 * 119.53250 * 180.02562 * 18 17 16 20 20 Cl 1.73598 * 119.60582 * 179.97438 * 19 18 17 21 21 C 1.39009 * 120.78534 * 359.95217 * 19 18 17 22 22 C 1.36729 * 120.69449 * 0.05068 * 21 19 18 23 23 C 1.39348 * 119.64803 * 359.97375 * 22 21 19 24 24 C 1.35343 * 119.68692 * 89.99290 * 14 13 11 25 25 O 1.21724 * 121.29618 * 0.25588 * 24 14 13 26 26 H 0.97007 * 120.00065 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47206 * 59.99674 * 9 7 2 28 28 H 1.08998 * 109.47308 * 299.99723 * 9 7 2 29 29 H 0.96997 * 120.00095 * 359.97438 * 10 9 7 30 30 H 1.08995 * 109.47382 * 59.99396 * 13 11 10 31 31 H 1.09006 * 109.46647 * 299.99367 * 13 11 10 32 32 H 1.07998 * 118.32213 * 359.97438 * 15 14 13 33 33 H 1.07997 * 120.23180 * 0.02562 * 18 17 16 34 34 H 1.07997 * 119.65236 * 180.02562 * 21 19 18 35 35 H 1.07999 * 120.17149 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7328 -6.0289 0.0006 14 7 2.0004 -7.2976 0.0005 15 6 1.6638 -7.8804 1.1807 16 7 1.0163 -9.0028 1.2636 17 6 0.6250 -9.6811 0.1560 18 6 -0.0708 -10.8883 0.2427 19 6 -0.4465 -11.5404 -0.9122 20 17 -1.3111 -13.0420 -0.8066 21 6 -0.1417 -11.0096 -2.1603 22 6 0.5389 -9.8287 -2.2692 23 6 0.9306 -9.1500 -1.1170 24 6 1.6656 -7.8782 -1.1754 25 8 1.9652 -7.3693 -2.2398 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 3.1566 -3.4355 0.0002 30 1 3.3589 -5.9712 0.8910 31 1 3.3601 -5.9710 -0.8890 32 1 1.9501 -7.3851 2.0967 33 1 -0.3129 -11.3083 1.2077 34 1 -0.4452 -11.5357 -3.0532 35 1 0.7717 -9.4243 -3.2432 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012980607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:40 Heat of formation + Delta-G solvation = -26.494556 kcal Electronic energy + Delta-G solvation = -23272.632209 eV Core-core repulsion = 19489.610180 eV Total energy + Delta-G solvation = -3783.022030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86590 -39.41179 -38.43927 -37.69702 -36.75940 -34.56072 -34.22236 -32.47954 -31.59614 -30.36662 -29.04755 -26.85595 -25.12167 -24.21941 -22.58670 -22.34928 -20.17323 -19.24729 -19.01151 -17.82265 -17.38899 -16.23561 -16.09464 -15.66985 -15.51630 -15.35432 -14.93922 -14.85663 -14.35170 -14.22210 -14.12347 -13.81236 -13.15382 -12.89502 -12.84575 -12.64050 -12.41526 -12.07461 -11.78027 -11.70721 -11.37614 -11.08679 -10.93411 -10.52649 -10.45131 -10.36590 -10.22869 -9.51794 -9.36965 -9.19978 -8.83846 -8.35365 -8.08102 -6.24010 -4.32117 0.17733 0.45027 1.65710 1.96967 2.12808 2.45083 3.01202 3.20589 3.25753 3.27064 3.59804 3.77089 3.87934 4.02404 4.28596 4.34916 4.50185 4.62487 4.77185 4.85452 4.99066 5.08155 5.12347 5.20617 5.47242 5.54411 5.74967 5.80354 5.99599 6.19883 6.38910 7.15017 7.20223 7.39098 7.49456 7.54849 7.60942 7.86660 8.39516 8.62171 8.86218 9.34442 10.86005 Molecular weight = 321.07amu Principal moments of inertia in cm(-1) A = 0.032693 B = 0.002308 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.258789 B =12129.641199 C =12160.471221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.703 5.703 11 C 0.483 3.517 12 O -0.544 6.544 13 C 0.071 3.929 14 N -0.527 5.527 15 C 0.402 3.598 16 N -0.531 5.531 17 C 0.174 3.826 18 C -0.106 4.106 19 C 0.009 3.991 20 Cl -0.060 7.060 21 C -0.137 4.137 22 C -0.024 4.024 23 C -0.193 4.193 24 C 0.554 3.446 25 O -0.501 6.501 26 H 0.268 0.732 27 H 0.028 0.972 28 H 0.029 0.971 29 H 0.393 0.607 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.204 0.796 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -22.744 0.952 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.351 5.351 11 C 0.265 3.735 12 O -0.422 6.422 13 C -0.056 4.056 14 N -0.247 5.247 15 C 0.115 3.885 16 N -0.251 5.251 17 C 0.064 3.936 18 C -0.126 4.126 19 C -0.019 4.019 20 Cl -0.031 7.031 21 C -0.156 4.156 22 C -0.044 4.044 23 C -0.199 4.199 24 C 0.347 3.653 25 O -0.374 6.374 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.226 0.774 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.220 0.780 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.948 -23.030 0.905 23.383 hybrid contribution 0.865 1.374 -0.665 1.755 sum 4.813 -21.656 0.240 22.185 Atomic orbital electron populations 1.69961 1.06156 1.27592 1.48430 1.24961 0.94933 0.99540 0.94552 0.86444 0.79403 0.82164 0.78729 1.20012 1.21035 1.19998 1.21152 0.93257 0.90293 1.53820 0.91797 1.19163 0.88184 0.81682 0.97936 1.46417 1.11487 1.05681 1.71561 1.20479 0.89549 0.84701 0.78721 1.90732 1.16388 1.84588 1.50537 1.21950 0.94808 0.81432 1.07377 1.46218 1.49481 1.21516 1.07519 1.24828 0.86253 0.88109 0.89301 1.68669 1.18730 1.08736 1.28972 1.18601 0.93969 0.93469 0.87605 1.20637 0.99751 0.93826 0.98373 1.20984 0.97093 0.89127 0.94733 1.98391 1.74928 1.31119 1.98626 1.20768 1.01442 0.96935 0.96468 1.20713 0.92894 0.92484 0.98270 1.20651 1.06762 0.97003 0.95467 1.18264 0.79188 0.84601 0.83252 1.90885 1.53269 1.65058 1.28171 0.92270 0.95412 0.95294 0.77366 0.85722 0.85564 0.77960 0.83222 0.83975 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.57 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.55 -14.26 9.28 -34.44 -0.32 -14.58 16 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 9 C 0.25 6.36 5.43 -5.20 -0.03 6.33 16 10 N -0.70 -13.42 5.55 -61.48 -0.34 -13.77 16 11 C 0.48 8.68 7.90 -10.99 -0.09 8.59 16 12 O -0.54 -12.45 16.43 5.56 0.09 -12.36 16 13 C 0.07 0.83 5.85 -5.19 -0.03 0.80 16 14 N -0.53 -6.85 2.09 -120.16 -0.25 -7.10 16 15 C 0.40 4.41 11.41 -90.16 -1.03 3.38 16 16 N -0.53 -6.55 10.38 -12.01 -0.12 -6.68 16 17 C 0.17 2.23 6.63 -84.52 -0.56 1.67 16 18 C -0.11 -1.15 9.80 -39.22 -0.38 -1.54 16 19 C 0.01 0.09 6.31 -39.44 -0.25 -0.16 16 20 Cl -0.06 -0.52 28.93 -51.86 -1.50 -2.02 16 21 C -0.14 -1.32 9.74 -39.84 -0.39 -1.71 16 22 C -0.02 -0.28 9.63 -39.71 -0.38 -0.66 16 23 C -0.19 -2.64 5.89 -104.78 -0.62 -3.25 16 24 C 0.55 8.54 7.66 -12.45 -0.10 8.44 16 25 O -0.50 -8.96 16.32 5.17 0.08 -8.88 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.39 6.10 8.32 -40.82 -0.34 5.76 16 30 H 0.12 0.81 7.99 -51.93 -0.41 0.40 16 31 H 0.13 1.39 7.46 -51.93 -0.39 1.01 16 32 H 0.20 1.34 7.99 -52.49 -0.42 0.92 16 33 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.57 7.83 -52.49 -0.41 1.16 16 LS Contribution 332.70 15.07 5.01 5.01 Total: -1.00 -35.17 332.70 -8.78 -43.95 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.20 Total: 2.45 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -4.27 Total: 8.95 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.02 Total: -52.38 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.18 Total: -21.24 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.17 -8.78 -43.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012980607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.452 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds