Wall clock time and date at job start Tue Mar 31 2020 05:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21456 * 119.99779 * 2 1 4 4 C 1.40967 * 120.00429 * 180.27926 * 2 1 3 5 5 C 1.36150 * 126.69179 * 179.41297 * 4 2 1 6 6 O 1.35242 * 125.44150 * 0.02562 * 5 4 2 7 7 C 1.47305 * 109.11570 * 179.85011 * 5 4 2 8 8 O 1.21638 * 124.94478 * 180.17961 * 7 5 4 9 9 N 1.34497 * 110.09809 * 0.43497 * 7 5 4 10 10 C 1.35996 * 125.99038 * 179.75382 * 9 7 5 11 11 H 1.08005 * 119.99223 * 342.36378 * 10 9 7 12 12 C 1.39690 * 120.00540 * 162.36847 * 10 9 7 13 13 N 1.30963 * 119.99710 * 350.12363 * 12 10 9 14 14 Si 1.86803 * 120.00168 * 170.13185 * 12 10 9 15 15 H 1.48499 * 109.47224 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47114 * 119.99866 * 14 12 10 17 17 H 1.48503 * 109.46746 * 239.99564 * 14 12 10 18 18 C 1.46757 * 108.02554 * 359.74730 * 9 7 5 19 19 H 1.08997 * 110.17966 * 240.80243 * 18 9 7 20 20 C 1.50702 * 110.11992 * 119.17197 * 18 9 7 21 21 C 1.38244 * 119.98299 * 323.01770 * 20 18 9 22 22 C 1.38216 * 120.00949 * 179.72415 * 21 20 18 23 23 C 1.38356 * 119.99020 * 0.55132 * 22 21 20 24 24 Cl 1.73591 * 120.01583 * 179.70183 * 23 22 21 25 25 C 1.38355 * 119.96769 * 359.72123 * 23 22 21 26 26 C 1.38218 * 119.98938 * 0.02562 * 25 23 22 27 27 H 1.09007 * 109.47105 * 89.99545 * 1 2 3 28 28 H 1.08997 * 109.47239 * 209.99553 * 1 2 3 29 29 H 1.09004 * 109.47490 * 329.99921 * 1 2 3 30 30 H 0.96698 * 114.00007 * 179.97438 * 6 5 4 31 31 H 0.96996 * 119.99368 * 180.02562 * 13 12 10 32 32 H 1.07993 * 119.99602 * 0.02562 * 21 20 18 33 33 H 1.08002 * 120.00863 * 180.27268 * 22 21 20 34 34 H 1.07999 * 120.00330 * 180.02562 * 25 23 22 35 35 H 1.07999 * 119.99198 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0519 0.0000 4 6 2.2119 -1.2207 -0.0060 5 6 3.5641 -1.3793 -0.0179 6 8 4.4712 -0.3762 -0.0257 7 6 3.8812 -2.8178 -0.0167 8 8 5.0048 -3.2836 -0.0226 9 7 2.7472 -3.5410 -0.0138 10 6 2.6651 -4.8985 -0.0168 11 1 3.5211 -5.4905 -0.3051 12 6 1.4736 -5.5270 0.3530 13 7 0.5023 -4.8280 0.8850 14 14 1.2659 -7.3646 0.0888 15 1 2.4996 -7.9192 -0.5241 16 1 1.0200 -8.0277 1.3945 17 1 0.1126 -7.6074 -0.8147 18 6 1.6139 -2.6086 -0.0068 19 1 1.0102 -2.7573 0.8884 20 6 0.7703 -2.8088 -1.2394 21 6 1.3722 -3.1077 -2.4475 22 6 0.5986 -3.2970 -3.5771 23 6 -0.7776 -3.1761 -3.5011 24 17 -1.7493 -3.4061 -4.9211 25 6 -1.3789 -2.8713 -2.2929 26 6 -0.6046 -2.6873 -1.1628 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 5.3902 -0.6771 -0.0335 31 1 -0.3248 -5.2646 1.1421 32 1 2.4466 -3.1982 -2.5076 33 1 1.0685 -3.5349 -4.5200 34 1 -2.4531 -2.7771 -2.2329 35 1 -1.0739 -2.4490 -0.2198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019087800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:42 Heat of formation + Delta-G solvation = -57.763782 kcal Electronic energy + Delta-G solvation = -25394.365792 eV Core-core repulsion = 21577.695076 eV Total energy + Delta-G solvation = -3816.670716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.060 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84647 -38.70200 -38.30124 -37.09976 -36.24287 -35.40343 -33.46596 -31.53721 -30.58138 -30.27539 -29.32262 -25.80725 -25.55762 -22.86302 -22.40996 -21.11679 -20.43396 -18.42843 -17.84868 -17.28455 -16.68047 -15.93275 -15.56388 -15.02361 -14.79532 -14.64119 -14.50817 -14.09881 -14.08164 -13.70051 -13.24361 -13.19198 -13.17991 -12.72177 -12.52156 -12.26803 -11.86006 -11.76850 -11.66991 -11.45328 -11.29047 -11.15309 -10.91736 -10.78387 -10.63898 -10.47850 -9.83455 -9.39903 -8.76646 -8.63174 -8.41508 -8.17688 -8.04110 -6.90488 -4.33226 1.11873 1.54420 1.71349 2.37783 2.87763 2.99876 3.04256 3.19610 3.63547 3.91409 3.95641 4.15847 4.42776 4.65943 4.76843 5.09922 5.17822 5.22178 5.36569 5.52866 5.58835 5.75523 5.79828 5.83585 6.05175 6.10771 6.26588 6.41018 6.56706 6.60169 6.61854 6.67382 6.98362 7.06661 7.19086 7.28494 7.71950 7.96331 8.22726 8.60329 8.67139 9.47483 10.08967 Molecular weight = 321.06amu Principal moments of inertia in cm(-1) A = 0.009442 B = 0.007393 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.777549 B = 3786.220090 C = 5582.153049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.417 3.583 3 O -0.482 6.482 4 C -0.312 4.312 5 C 0.160 3.840 6 O -0.427 6.427 7 C 0.401 3.599 8 O -0.589 6.589 9 N -0.374 5.374 10 C -0.288 4.288 11 H 0.115 0.885 12 C 0.046 3.954 13 N -0.839 5.839 14 Si 0.933 3.067 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.272 1.272 18 C 0.215 3.785 19 H 0.144 0.856 20 C -0.025 4.025 21 C -0.085 4.085 22 C -0.115 4.115 23 C -0.043 4.043 24 Cl -0.091 7.091 25 C -0.120 4.120 26 C -0.080 4.080 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.402 0.598 31 H 0.283 0.717 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.583 2.144 -4.128 8.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.300 3.700 3 O -0.362 6.362 4 C -0.319 4.319 5 C 0.104 3.896 6 O -0.226 6.226 7 C 0.192 3.808 8 O -0.479 6.479 9 N -0.087 5.087 10 C -0.415 4.415 11 H 0.133 0.867 12 C -0.164 4.164 13 N -0.474 5.474 14 Si 0.758 3.242 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.197 1.197 18 C 0.111 3.889 19 H 0.161 0.839 20 C -0.026 4.026 21 C -0.104 4.104 22 C -0.133 4.133 23 C -0.069 4.069 24 Cl -0.062 7.062 25 C -0.138 4.138 26 C -0.099 4.099 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.255 0.745 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.518 2.657 -4.169 8.181 hybrid contribution 0.130 -1.342 -0.203 1.364 sum -6.388 1.315 -4.372 7.852 Atomic orbital electron populations 1.22351 0.95032 1.04115 1.04037 1.19819 0.91117 0.86803 0.72238 1.90566 1.72119 1.33984 1.39579 1.21056 0.91878 0.96740 1.22189 1.21856 0.90121 0.89056 0.88533 1.84877 1.19962 1.30894 1.86852 1.18480 0.85967 0.85871 0.90483 1.90689 1.21647 1.75367 1.60155 1.43490 1.04579 1.05460 1.55196 1.19778 1.00368 0.78513 1.42830 0.86727 1.25532 0.95011 1.01546 0.94329 1.69494 1.05900 1.37786 1.34226 0.85718 0.79371 0.80392 0.78756 1.18599 1.19951 1.19748 1.19259 0.88385 0.82929 0.98352 0.83926 1.19625 0.93504 0.95918 0.93577 1.20908 1.00186 0.97873 0.91447 1.20890 0.91491 1.01670 0.99295 1.20798 0.91582 1.06655 0.87886 1.98328 1.71587 1.95810 1.40524 1.20889 0.99984 1.01864 0.91111 1.20910 0.92689 0.98596 0.97679 0.89204 0.89615 0.90413 0.74464 0.90609 0.85757 0.85672 0.85549 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.78 8.51 36.00 0.31 -2.47 16 2 C 0.42 7.71 7.01 -33.28 -0.23 7.48 16 3 O -0.48 -10.30 16.83 -9.01 -0.15 -10.45 16 4 C -0.31 -6.13 5.46 -104.14 -0.57 -6.70 16 5 C 0.16 3.32 7.38 -36.65 -0.27 3.05 16 6 O -0.43 -8.00 12.70 -33.58 -0.43 -8.42 16 7 C 0.40 9.32 7.89 -12.70 -0.10 9.22 16 8 O -0.59 -15.18 17.59 5.24 0.09 -15.09 16 9 N -0.37 -8.50 2.02 -111.18 -0.22 -8.72 16 10 C -0.29 -6.78 9.43 -15.16 -0.14 -6.93 16 11 H 0.12 2.82 7.85 -52.48 -0.41 2.41 16 12 C 0.05 1.00 5.15 -17.38 -0.09 0.91 16 13 N -0.84 -17.78 9.93 55.53 0.55 -17.22 16 14 Si 0.93 17.72 29.57 -169.99 -5.03 12.69 16 15 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 18 C 0.22 4.27 1.65 -69.89 -0.12 4.15 16 19 H 0.14 2.93 6.29 -51.93 -0.33 2.61 16 20 C -0.03 -0.46 3.39 -104.62 -0.35 -0.81 16 21 C -0.09 -1.55 9.14 -39.59 -0.36 -1.91 16 22 C -0.11 -1.84 9.83 -39.55 -0.39 -2.23 16 23 C -0.04 -0.65 6.32 -39.49 -0.25 -0.90 16 24 Cl -0.09 -1.23 28.96 -51.86 -1.50 -2.73 16 25 C -0.12 -1.73 9.83 -39.55 -0.39 -2.12 16 26 C -0.08 -1.25 7.32 -39.59 -0.29 -1.54 16 27 H 0.09 1.17 7.73 -51.92 -0.40 0.77 16 28 H 0.09 1.11 5.39 -51.93 -0.28 0.83 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.40 5.84 8.85 45.56 0.40 6.24 16 31 H 0.28 5.62 8.30 -40.82 -0.34 5.28 16 32 H 0.12 2.41 7.64 -52.49 -0.40 2.01 16 33 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.13 1.86 6.59 -52.49 -0.35 1.51 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -28.17 320.14 -7.28 -35.45 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -2.17 Total: 10.46 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -3.25 Total: -0.79 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.33 Total: -25.95 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.49 Total: -33.96 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.17 -7.28 -35.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019087800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.314 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds