Wall clock time and date at job start Tue Mar 31 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86797 * 119.99955 * 2 1 4 4 H 1.48498 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46966 * 299.99848 * 3 2 1 6 6 H 1.48498 * 109.47195 * 59.99915 * 3 2 1 7 7 C 1.39881 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00261 * 180.02562 * 7 2 1 9 9 N 1.35951 * 119.99453 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99130 * 179.97438 * 9 7 2 11 11 O 1.21626 * 120.00551 * 0.02562 * 10 9 7 12 12 C 1.47585 * 119.99431 * 179.97438 * 10 9 7 13 13 C 1.39804 * 120.26333 * 308.09882 * 12 10 9 14 14 C 1.38019 * 120.32054 * 179.97438 * 13 12 10 15 15 C 1.38488 * 120.68628 * 0.02562 * 14 13 12 16 16 C 1.39237 * 120.11831 * 0.03957 * 15 14 13 17 17 C 1.40512 * 120.25617 * 128.12114 * 12 10 9 18 18 C 1.47457 * 120.60949 * 0.33662 * 17 12 10 19 19 O 1.21606 * 120.31998 * 346.11847 * 18 17 12 20 20 C 1.47756 * 119.28953 * 166.55654 * 18 17 12 21 21 C 1.39202 * 120.63626 * 193.52569 * 20 18 17 22 22 C 1.38335 * 119.79174 * 179.67976 * 21 20 18 23 23 C 1.38387 * 120.49726 * 0.03791 * 22 21 20 24 24 C 1.38334 * 120.50128 * 359.97438 * 23 22 21 25 25 C 1.39184 * 119.79171 * 359.97438 * 24 23 22 26 26 C 1.47758 * 120.63047 * 180.02562 * 25 24 23 27 27 O 1.21571 * 120.40914 * 346.20064 * 26 25 24 28 28 H 0.97005 * 119.99866 * 359.97438 * 1 2 3 29 29 H 0.96993 * 120.00355 * 0.02562 * 9 7 2 30 30 H 1.08001 * 119.83620 * 359.95497 * 13 12 10 31 31 H 1.08002 * 119.65814 * 180.02562 * 14 13 12 32 32 H 1.07998 * 119.94207 * 180.02562 * 15 14 13 33 33 H 1.08007 * 120.10744 * 359.70144 * 21 20 18 34 34 H 1.07999 * 119.74950 * 180.02562 * 22 21 20 35 35 H 1.08000 * 119.74709 * 180.02562 * 23 22 21 36 36 H 1.08004 * 120.10706 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8837 2.3964 1.2125 7 6 2.0080 -1.2114 -0.0005 8 1 3.0879 -1.2114 -0.0001 9 7 1.3281 -2.3887 -0.0005 10 6 2.0021 -3.5559 -0.0016 11 8 3.2183 -3.5559 -0.0021 12 6 1.2641 -4.8340 -0.0010 13 6 0.2677 -5.0718 0.9503 14 6 -0.4235 -6.2664 0.9516 15 6 -0.1426 -7.2465 0.0144 16 6 0.8461 -7.0349 -0.9429 17 6 1.5579 -5.8215 -0.9564 18 6 2.6093 -5.6001 -1.9663 19 8 3.0587 -4.4852 -2.1503 20 6 3.1035 -6.7454 -2.7583 21 6 4.2707 -6.6376 -3.5091 22 6 4.7211 -7.7230 -4.2390 23 6 4.0196 -8.9158 -4.2292 24 6 2.8576 -9.0409 -3.4890 25 6 2.3901 -7.9596 -2.7478 26 6 1.1515 -8.0729 -1.9502 27 8 0.3940 -9.0086 -2.1195 28 1 -0.4850 0.8401 0.0004 29 1 0.3582 -2.3887 -0.0005 30 1 0.0380 -4.3172 1.6880 31 1 -1.1915 -6.4387 1.6912 32 1 -0.6912 -8.1767 0.0262 33 1 4.8232 -5.7096 -3.5216 34 1 5.6270 -7.6387 -4.8210 35 1 4.3825 -9.7556 -4.8032 36 1 2.3154 -9.9750 -3.4857 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095975670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:13 Heat of formation + Delta-G solvation = -62.229266 kcal Electronic energy + Delta-G solvation = -25687.739315 eV Core-core repulsion = 21873.307811 eV Total energy + Delta-G solvation = -3814.431504 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.29023 -40.64347 -40.06928 -39.16289 -38.51415 -36.09414 -34.18950 -33.49449 -32.37129 -32.16885 -31.54190 -27.58184 -26.81627 -25.80694 -24.34472 -23.86258 -22.35851 -21.04062 -20.37693 -20.12527 -19.26752 -18.09888 -17.55417 -17.11641 -16.76814 -16.58724 -16.50596 -16.32149 -16.01924 -15.83426 -15.28498 -15.23028 -15.14341 -15.02227 -14.74457 -14.60337 -13.82893 -13.63260 -13.31276 -13.26422 -13.13323 -12.97830 -12.91981 -12.47326 -12.39923 -12.15354 -11.62951 -11.39649 -10.82933 -10.53517 -10.32940 -10.18944 -10.14806 -10.12652 -10.08447 -8.57252 -5.97642 -1.33151 -0.43497 -0.12041 0.04279 1.26756 1.36485 1.38110 1.46561 1.52944 1.97057 2.24311 2.44580 2.52552 2.65738 2.84438 2.98315 3.17555 3.46551 3.64166 3.76246 3.90729 3.93292 4.08247 4.11463 4.14801 4.19687 4.31277 4.49482 4.55115 4.62240 4.83074 4.88787 5.08081 5.10300 5.15669 5.25490 5.29170 5.33214 5.57936 5.71582 5.87653 6.04850 6.33447 6.51172 7.03722 7.41746 8.02007 8.60542 Molecular weight = 321.08amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.004082 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.536979 B = 6858.392563 C = 8257.212699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.005 4.005 3 Si 0.995 3.005 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.339 4.339 8 H 0.077 0.923 9 N -0.546 5.546 10 C 0.472 3.528 11 O -0.615 6.615 12 C -0.080 4.080 13 C -0.080 4.080 14 C -0.078 4.078 15 C -0.053 4.053 16 C -0.135 4.135 17 C -0.110 4.110 18 C 0.400 3.600 19 O -0.434 6.434 20 C -0.131 4.131 21 C -0.088 4.088 22 C -0.086 4.086 23 C -0.088 4.088 24 C -0.065 4.065 25 C -0.141 4.141 26 C 0.447 3.553 27 O -0.441 6.441 28 H 0.283 0.717 29 H 0.396 0.604 30 H 0.148 0.852 31 H 0.190 0.810 32 H 0.176 0.824 33 H 0.127 0.873 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 -20.004 -4.858 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.207 4.207 3 Si 0.818 3.182 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.180 5.180 10 C 0.260 3.740 11 O -0.502 6.502 12 C -0.084 4.084 13 C -0.099 4.099 14 C -0.096 4.096 15 C -0.071 4.071 16 C -0.137 4.137 17 C -0.112 4.112 18 C 0.278 3.722 19 O -0.309 6.309 20 C -0.132 4.132 21 C -0.106 4.106 22 C -0.103 4.103 23 C -0.105 4.105 24 C -0.083 4.083 25 C -0.142 4.142 26 C 0.327 3.673 27 O -0.318 6.318 28 H 0.093 0.907 29 H 0.230 0.770 30 H 0.166 0.834 31 H 0.207 0.793 32 H 0.193 0.807 33 H 0.145 0.855 34 H 0.189 0.811 35 H 0.200 0.800 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.412 -19.699 -5.043 20.339 hybrid contribution 0.086 1.614 0.178 1.626 sum 0.498 -18.085 -4.864 18.735 Atomic orbital electron populations 1.69419 1.07184 1.29917 1.48019 1.26194 0.96477 1.02405 0.95639 0.84856 0.78004 0.76647 0.78721 1.19993 1.19407 1.18699 1.19688 0.92811 0.83846 1.50542 0.90452 1.41504 1.09153 1.04454 1.62880 1.18140 0.87397 0.84136 0.84375 1.90593 1.14969 1.87482 1.57178 1.20290 0.97073 0.93949 0.97049 1.21871 0.92266 0.99317 0.96470 1.21795 0.98699 0.90652 0.98436 1.21836 0.93198 1.00810 0.91298 1.20448 0.99638 0.93519 1.00067 1.20439 0.98347 0.94992 0.97423 1.20962 0.81119 0.88497 0.81634 1.90793 1.52249 1.26959 1.60870 1.20381 0.98347 0.93849 1.00597 1.21557 0.93965 1.00650 0.94443 1.21850 1.00626 0.91445 0.96411 1.21926 0.93017 0.98749 0.96822 1.21698 0.96144 0.97706 0.92740 1.20407 0.97162 0.94769 1.01853 1.20305 0.84218 0.82898 0.79908 1.90576 1.47629 1.30835 1.62759 0.90656 0.77026 0.83437 0.79272 0.80682 0.85476 0.81052 0.80037 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.36 13.03 21.81 0.28 -49.07 16 2 C -0.01 -0.28 5.51 85.24 0.47 0.19 16 3 Si 1.00 43.82 29.56 68.60 2.03 45.85 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.34 -20.32 9.68 84.45 0.82 -19.50 16 8 H 0.08 5.00 7.15 -2.91 -0.02 4.98 16 9 N -0.55 -30.39 5.21 -309.85 -1.62 -32.00 16 10 C 0.47 25.52 5.93 86.71 0.51 26.03 16 11 O -0.61 -38.28 14.30 18.55 0.27 -38.02 16 12 C -0.08 -3.37 5.69 -19.88 -0.11 -3.49 16 13 C -0.08 -2.52 9.66 22.60 0.22 -2.30 16 14 C -0.08 -1.70 10.01 22.28 0.22 -1.48 16 15 C -0.05 -1.23 9.61 22.57 0.22 -1.01 16 16 C -0.14 -4.11 5.88 -19.90 -0.12 -4.23 16 17 C -0.11 -4.30 5.91 -19.70 -0.12 -4.42 16 18 C 0.40 16.97 6.80 27.22 0.19 17.16 16 19 O -0.43 -22.61 13.47 18.62 0.25 -22.36 16 20 C -0.13 -4.24 5.89 -19.89 -0.12 -4.36 16 21 C -0.09 -2.38 9.62 22.52 0.22 -2.16 16 22 C -0.09 -1.43 10.03 22.33 0.22 -1.20 16 23 C -0.09 -1.16 10.03 22.33 0.22 -0.94 16 24 C -0.07 -1.20 9.62 22.52 0.22 -0.98 16 25 C -0.14 -3.78 5.88 -19.90 -0.12 -3.89 16 26 C 0.45 12.52 7.02 27.33 0.19 12.71 16 27 O -0.44 -12.08 16.67 -3.94 -0.07 -12.15 16 28 H 0.28 14.20 8.30 -92.70 -0.77 13.44 16 29 H 0.40 20.79 7.79 -92.71 -0.72 20.07 16 30 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 31 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.18 2.86 7.75 -2.91 -0.02 2.84 16 33 H 0.13 3.76 7.76 -2.91 -0.02 3.73 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.16 2.27 7.76 -2.91 -0.02 2.25 16 Total: -1.00 -82.58 325.07 4.73 -77.85 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.45 Total: 23.77 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 3.14 Total: 6.14 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -1.33 Total: -81.08 kcal Atomic # 8 Polarization: -72.98 SS G_CDS: 0.45 Total: -72.52 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -82.58 4.73 -77.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095975670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.618 kcal (2) G-P(sol) polarization free energy of solvation -82.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds