Wall clock time and date at job start Tue Mar 31 2020 05:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35912 * 117.00253 * 2 1 4 4 C 1.38477 * 119.98232 * 359.73112 * 3 2 1 5 5 C 1.39537 * 119.78607 * 179.79255 * 4 3 2 6 6 C 1.43198 * 120.12057 * 180.23196 * 5 4 3 7 7 N 5.84229 * 81.27417 * 359.97386 * 2 1 3 8 8 C 1.39663 * 119.75586 * 0.47299 * 5 4 3 9 9 C 1.37954 * 119.95640 * 359.75653 * 8 5 4 10 10 C 1.38297 * 120.21080 * 0.02562 * 9 8 5 11 11 S 1.76202 * 119.86993 * 179.97438 * 10 9 8 12 12 O 1.42102 * 106.40233 * 228.56137 * 11 10 9 13 13 O 1.42100 * 106.40543 * 1.48615 * 11 10 9 14 14 N 1.65600 * 107.21604 * 115.02513 * 11 10 9 15 15 C 1.36942 * 120.00228 * 270.00251 * 14 11 10 16 16 H 1.07995 * 119.99589 * 6.69871 * 15 14 11 17 17 C 1.38816 * 119.99870 * 186.70673 * 15 14 11 18 18 N 1.31615 * 120.00334 * 26.57623 * 17 15 14 19 19 Si 1.86801 * 119.99547 * 206.58340 * 17 15 14 20 20 H 1.48502 * 109.47374 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47101 * 119.99711 * 19 17 15 22 22 H 1.48500 * 109.46982 * 239.99938 * 19 17 15 23 23 C 1.46505 * 119.99997 * 89.99915 * 14 11 10 24 24 C 1.47197 * 109.47233 * 93.06983 * 23 14 11 25 25 N 5.10384 * 119.02262 * 166.29846 * 2 1 3 26 26 H 1.08991 * 109.47454 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46983 * 59.99175 * 1 2 3 28 28 H 1.08999 * 109.47037 * 299.99934 * 1 2 3 29 29 H 1.08001 * 120.10335 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.02324 * 179.72893 * 8 5 4 31 31 H 1.07993 * 119.89452 * 179.97438 * 9 8 5 32 32 H 0.97001 * 119.99970 * 179.97438 * 18 17 15 33 33 H 1.09005 * 109.46997 * 213.06822 * 23 14 11 34 34 H 1.09004 * 109.47046 * 333.06832 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2916 2.3721 -0.0056 5 6 1.9293 3.6132 -0.0012 6 6 1.1561 4.8185 -0.0020 7 7 0.5427 5.7747 -0.0026 8 6 3.3246 3.6755 -0.0012 9 6 4.0661 2.5122 -0.0004 10 6 3.4323 1.2830 -0.0002 11 16 4.3883 -0.1971 0.0001 12 8 3.8481 -1.0239 -1.0217 13 8 5.7507 0.2050 0.0355 14 7 4.0920 -0.9716 1.4336 15 6 4.8722 -0.7088 2.5279 16 1 5.6092 0.0796 2.4887 17 6 4.7157 -1.4558 3.6874 18 7 4.2523 -2.6858 3.6203 19 14 5.1628 -0.7151 5.3430 20 1 5.6575 0.6714 5.1477 21 1 3.9620 -0.6942 6.2164 22 1 6.2248 -1.5338 5.9809 23 6 2.9952 -1.9380 1.5310 24 6 3.5085 -3.2914 1.2636 25 7 3.9051 -4.3359 1.0571 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 0.2130 2.3172 -0.0104 30 1 3.8227 4.6338 -0.0022 31 1 5.1449 2.5616 -0.0008 32 1 4.1433 -3.2079 4.4305 33 1 2.5680 -1.9029 2.5332 34 1 2.2263 -1.6899 0.7993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185567139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:52 Heat of formation + Delta-G solvation = 3.962895 kcal Electronic energy + Delta-G solvation = -25016.244091 eV Core-core repulsion = 21236.586502 eV Total energy + Delta-G solvation = -3779.657589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.062 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.39751 -38.07324 -36.63073 -36.44679 -36.23468 -34.96892 -34.31099 -31.78344 -31.53456 -30.43527 -27.56502 -27.39080 -24.52531 -24.02224 -22.46095 -19.68317 -18.91123 -18.10495 -17.74138 -17.09851 -16.62092 -16.21890 -16.02779 -15.65826 -14.70640 -14.52128 -14.40615 -14.30275 -14.16962 -13.90420 -13.64412 -13.02323 -12.92496 -12.69368 -12.59721 -12.25347 -11.89447 -11.70394 -11.66132 -11.46250 -11.31560 -11.23011 -11.21656 -11.09397 -10.97646 -10.52443 -10.40240 -10.20413 -10.04101 -9.63913 -9.37366 -8.55263 -8.33262 -6.49541 -3.96821 0.27636 1.19336 1.21353 2.35865 2.60347 3.01065 3.13234 3.23963 3.27295 3.51053 3.54119 3.75010 4.13269 4.30956 4.40271 4.47275 4.61346 4.77137 4.80601 4.88785 5.06067 5.08860 5.31661 5.40726 5.42795 5.49615 5.55460 5.77774 5.98968 6.03240 6.07715 6.45787 6.57766 6.93737 7.04309 7.16046 7.42771 8.19302 8.71759 9.03567 9.10922 10.54918 Molecular weight = 321.06amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.005599 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.733755 B = 4999.247362 C = 5588.535581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.300 6.300 3 C 0.222 3.778 4 C -0.184 4.184 5 C 0.045 3.955 6 C 0.257 3.743 7 N -0.412 5.412 8 C -0.131 4.131 9 C 0.013 3.987 10 C -0.674 4.674 11 S 2.652 3.348 12 O -0.961 6.961 13 O -0.959 6.959 14 N -0.831 5.831 15 C -0.323 4.323 16 H 0.118 0.882 17 C 0.049 3.951 18 N -0.859 5.859 19 Si 0.907 3.093 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.283 1.283 23 C 0.237 3.763 24 C 0.260 3.740 25 N -0.481 5.481 26 H 0.111 0.889 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.273 0.727 33 H 0.120 0.880 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 9.423 -3.685 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.212 6.212 3 C 0.174 3.826 4 C -0.205 4.205 5 C 0.042 3.958 6 C -0.059 4.059 7 N -0.087 5.087 8 C -0.152 4.152 9 C -0.006 4.006 10 C -0.754 4.754 11 S 2.740 3.260 12 O -0.951 6.951 13 O -0.949 6.949 14 N -0.662 5.662 15 C -0.455 4.455 16 H 0.136 0.864 17 C -0.158 4.158 18 N -0.498 5.498 19 Si 0.733 3.267 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.209 1.209 23 C 0.107 3.893 24 C -0.058 4.058 25 N -0.162 5.162 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.176 0.824 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.985 8.841 -4.615 12.775 hybrid contribution -0.485 1.068 1.530 1.928 sum -8.470 9.909 -3.085 13.396 Atomic orbital electron populations 1.23250 0.77278 1.05213 1.01680 1.86210 1.22508 1.25446 1.87080 1.18077 0.90484 0.84499 0.89545 1.21188 1.00428 0.90682 1.08249 1.15861 0.91961 0.86656 1.01335 1.25706 0.93310 0.92951 0.93924 1.81251 1.08725 1.10619 1.08081 1.21175 0.91348 0.99671 1.03030 1.20805 1.01092 0.89311 0.89356 1.31548 1.04581 1.22889 1.16411 1.04079 0.74384 0.73929 0.73656 1.93538 1.80488 1.65599 1.55470 1.93483 1.31458 1.83281 1.86703 1.53190 1.39057 1.44635 1.29320 1.19397 1.15996 1.19840 0.90225 0.86436 1.25021 0.97332 0.94268 0.99227 1.69953 1.44602 1.05984 1.29270 0.86206 0.78225 0.79893 0.82397 1.19045 1.20525 1.20901 1.18437 0.87930 0.78719 1.04173 1.29066 0.92877 0.94567 0.89335 1.80841 1.08157 1.13562 1.13657 0.87098 0.92154 0.91910 0.84009 0.84265 0.82425 0.91579 0.86212 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.97 6.39 -29.59 -0.19 -4.16 16 3 C 0.22 3.04 6.63 -39.28 -0.26 2.78 16 4 C -0.18 -2.02 8.74 -39.01 -0.34 -2.36 16 5 C 0.05 0.50 5.73 -106.96 -0.61 -0.11 16 6 C 0.26 2.93 15.33 -22.47 -0.34 2.59 16 7 N -0.41 -5.40 18.54 41.84 0.78 -4.63 16 8 C -0.13 -1.42 9.75 -39.15 -0.38 -1.80 16 9 C 0.01 0.18 9.53 -39.66 -0.38 -0.20 16 10 C -0.67 -10.55 5.93 -39.35 -0.23 -10.79 16 11 S 2.65 53.06 5.20 -107.50 -0.56 52.50 16 12 O -0.96 -20.71 16.29 -62.60 -1.02 -21.73 16 13 O -0.96 -21.03 15.83 -57.17 -0.90 -21.94 16 14 N -0.83 -17.82 2.88 -62.77 -0.18 -18.00 16 15 C -0.32 -7.42 9.37 -15.06 -0.14 -7.56 16 16 H 0.12 2.66 7.41 -52.49 -0.39 2.27 16 17 C 0.05 1.13 4.88 -17.43 -0.09 1.04 16 18 N -0.86 -20.78 9.06 55.49 0.50 -20.28 16 19 Si 0.91 18.17 29.63 -169.99 -5.04 13.14 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 C 0.24 4.76 4.92 -6.83 -0.03 4.73 16 24 C 0.26 6.11 13.34 -20.76 -0.28 5.83 16 25 N -0.48 -12.15 18.54 42.16 0.78 -11.36 16 26 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.39 7.65 -51.93 -0.40 0.00 16 28 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 29 H 0.14 1.15 6.29 -52.49 -0.33 0.82 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.16 1.93 7.32 -52.49 -0.38 1.54 16 32 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 33 H 0.12 2.36 6.45 -51.93 -0.33 2.02 16 34 H 0.10 1.63 4.81 -51.93 -0.25 1.38 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -31.14 319.74 -5.57 -36.71 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -2.46 Total: -0.36 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -2.10 Total: -4.71 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 1.88 Total: -54.27 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -2.11 Total: -47.83 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.04 Total: 13.14 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.56 Total: 52.50 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.14 -5.57 -36.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185567139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.670 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds