Wall clock time and date at job start Tue Mar 31 2020 05:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35912 * 117.00253 * 2 1 4 4 C 1.38477 * 119.98232 * 359.73112 * 3 2 1 5 5 C 1.39537 * 119.78607 * 179.79255 * 4 3 2 6 6 C 1.43198 * 120.12057 * 180.23196 * 5 4 3 7 7 N 5.84229 * 81.27417 * 359.97386 * 2 1 3 8 8 C 1.39663 * 119.75586 * 0.47299 * 5 4 3 9 9 C 1.37954 * 119.95640 * 359.75653 * 8 5 4 10 10 C 1.38297 * 120.21080 * 0.02562 * 9 8 5 11 11 S 1.76202 * 119.86993 * 179.97438 * 10 9 8 12 12 O 1.42102 * 106.40233 * 228.56137 * 11 10 9 13 13 O 1.42100 * 106.40543 * 1.48615 * 11 10 9 14 14 N 1.65600 * 107.21604 * 115.02513 * 11 10 9 15 15 C 1.36942 * 120.00228 * 270.00251 * 14 11 10 16 16 H 1.07995 * 119.99589 * 6.69871 * 15 14 11 17 17 C 1.38816 * 119.99870 * 186.70673 * 15 14 11 18 18 N 1.31615 * 120.00334 * 26.57623 * 17 15 14 19 19 Si 1.86801 * 119.99547 * 206.58340 * 17 15 14 20 20 H 1.48502 * 109.47374 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47101 * 119.99711 * 19 17 15 22 22 H 1.48500 * 109.46982 * 239.99938 * 19 17 15 23 23 C 1.46505 * 119.99997 * 89.99915 * 14 11 10 24 24 C 1.47197 * 109.47233 * 93.06983 * 23 14 11 25 25 N 5.10384 * 119.02262 * 166.29846 * 2 1 3 26 26 H 1.08991 * 109.47454 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46983 * 59.99175 * 1 2 3 28 28 H 1.08999 * 109.47037 * 299.99934 * 1 2 3 29 29 H 1.08001 * 120.10335 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.02324 * 179.72893 * 8 5 4 31 31 H 1.07993 * 119.89452 * 179.97438 * 9 8 5 32 32 H 0.97001 * 119.99970 * 179.97438 * 18 17 15 33 33 H 1.09005 * 109.46997 * 213.06822 * 23 14 11 34 34 H 1.09004 * 109.47046 * 333.06832 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2916 2.3721 -0.0056 5 6 1.9293 3.6132 -0.0012 6 6 1.1561 4.8185 -0.0020 7 7 0.5427 5.7747 -0.0026 8 6 3.3246 3.6755 -0.0012 9 6 4.0661 2.5122 -0.0004 10 6 3.4323 1.2830 -0.0002 11 16 4.3883 -0.1971 0.0001 12 8 3.8481 -1.0239 -1.0217 13 8 5.7507 0.2050 0.0355 14 7 4.0920 -0.9716 1.4336 15 6 4.8722 -0.7088 2.5279 16 1 5.6092 0.0796 2.4887 17 6 4.7157 -1.4558 3.6874 18 7 4.2523 -2.6858 3.6203 19 14 5.1628 -0.7151 5.3430 20 1 5.6575 0.6714 5.1477 21 1 3.9620 -0.6942 6.2164 22 1 6.2248 -1.5338 5.9809 23 6 2.9952 -1.9380 1.5310 24 6 3.5085 -3.2914 1.2636 25 7 3.9051 -4.3359 1.0571 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 0.2130 2.3172 -0.0104 30 1 3.8227 4.6338 -0.0022 31 1 5.1449 2.5616 -0.0008 32 1 4.1433 -3.2079 4.4305 33 1 2.5680 -1.9029 2.5332 34 1 2.2263 -1.6899 0.7993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185567139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:51 Heat of formation + Delta-G solvation = -17.081556 kcal Electronic energy + Delta-G solvation = -25017.156647 eV Core-core repulsion = 21236.586502 eV Total energy + Delta-G solvation = -3780.570145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.062 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.36872 -39.05149 -38.23547 -38.00039 -37.38126 -36.67926 -36.13819 -33.20010 -32.82474 -31.37880 -29.04930 -28.26888 -25.82269 -25.50535 -23.40145 -20.63272 -20.46157 -19.75207 -19.23830 -18.40596 -17.77285 -17.60136 -17.15571 -16.73039 -16.30609 -15.99508 -15.55769 -15.35284 -15.17585 -15.08199 -14.90675 -14.54947 -14.04988 -13.95597 -13.67016 -13.57410 -13.41997 -13.18559 -13.08935 -12.96130 -12.86830 -12.68514 -12.62308 -12.56641 -12.12266 -12.03850 -11.87121 -11.78271 -11.65336 -11.23665 -10.45213 -10.03986 -9.47805 -8.15433 -5.74228 -0.77763 -0.33171 0.27102 1.45552 1.53847 1.58675 1.61655 1.70919 2.03355 2.13784 2.44133 2.51443 2.58654 2.63335 2.79014 2.94660 3.17225 3.43473 3.81847 3.84087 3.99199 4.06200 4.36112 4.42423 4.52420 4.55814 4.62248 4.75414 4.92094 4.98796 5.04455 5.08581 5.37195 5.51049 5.72295 6.16203 6.26474 6.50297 7.06119 7.21351 7.42585 8.89659 Molecular weight = 321.06amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.005599 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.733755 B = 4999.247362 C = 5588.535581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.326 6.326 3 C 0.221 3.779 4 C -0.169 4.169 5 C 0.060 3.940 6 C 0.279 3.721 7 N -0.435 5.435 8 C -0.118 4.118 9 C 0.007 3.993 10 C -0.685 4.685 11 S 2.684 3.316 12 O -0.987 6.987 13 O -0.990 6.990 14 N -0.859 5.859 15 C -0.339 4.339 16 H 0.112 0.888 17 C 0.007 3.993 18 N -0.904 5.904 19 Si 0.966 3.034 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.299 1.299 23 C 0.244 3.756 24 C 0.264 3.736 25 N -0.527 5.527 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.177 0.823 30 H 0.173 0.827 31 H 0.163 0.837 32 H 0.266 0.734 33 H 0.126 0.874 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.168 12.683 -4.225 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.239 6.239 3 C 0.172 3.828 4 C -0.191 4.191 5 C 0.056 3.944 6 C -0.036 4.036 7 N -0.110 5.110 8 C -0.139 4.139 9 C -0.012 4.012 10 C -0.775 4.775 11 S 2.778 3.222 12 O -0.977 6.977 13 O -0.980 6.980 14 N -0.691 5.691 15 C -0.468 4.468 16 H 0.130 0.870 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.792 3.208 20 H -0.182 1.182 21 H -0.199 1.199 22 H -0.227 1.227 23 C 0.115 3.885 24 C -0.054 4.054 25 N -0.208 5.208 26 H 0.142 0.858 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.194 0.806 30 H 0.191 0.809 31 H 0.181 0.819 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.961 12.027 -5.088 16.425 hybrid contribution 0.048 0.295 1.365 1.397 sum -9.913 12.323 -3.724 16.247 Atomic orbital electron populations 1.23693 0.74542 1.06965 1.03717 1.86152 1.25388 1.25539 1.86787 1.18121 0.89784 0.85742 0.89152 1.21448 1.02015 0.89353 1.06272 1.15930 0.92015 0.86544 0.99879 1.25473 0.92601 0.92411 0.93130 1.81310 1.09559 1.11399 1.08757 1.21412 0.91249 1.00016 1.01260 1.20950 1.01698 0.89202 0.89332 1.30382 1.05043 1.20116 1.21979 1.01620 0.73491 0.74671 0.72450 1.93516 1.80755 1.67016 1.56384 1.93457 1.33540 1.84157 1.86869 1.52932 1.40228 1.49201 1.26754 1.19461 1.18839 1.18838 0.89652 0.86999 1.25588 0.97916 0.94337 1.01627 1.70041 1.48229 1.07061 1.29125 0.85300 0.77466 0.79005 0.79034 1.18190 1.19896 1.22669 1.18782 0.87944 0.76491 1.05333 1.30075 0.91968 0.95265 0.88049 1.80803 1.09703 1.14979 1.15354 0.85812 0.90076 0.89798 0.80556 0.80946 0.81941 0.92345 0.85601 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -7.74 6.39 -82.87 -0.53 -8.27 16 3 C 0.22 5.33 6.63 22.47 0.15 5.48 16 4 C -0.17 -2.91 8.74 22.64 0.20 -2.71 16 5 C 0.06 1.03 5.73 -21.38 -0.12 0.91 16 6 C 0.28 5.07 15.33 88.33 1.35 6.42 16 7 N -0.44 -9.73 18.54 19.00 0.35 -9.37 16 8 C -0.12 -2.04 9.75 22.55 0.22 -1.82 16 9 C 0.01 0.18 9.53 22.22 0.21 0.39 16 10 C -0.69 -20.06 5.93 22.42 0.13 -19.92 16 11 S 2.68 107.09 5.20 -56.49 -0.29 106.79 16 12 O -0.99 -42.51 16.29 -122.81 -2.00 -44.52 16 13 O -0.99 -43.89 15.83 -128.00 -2.03 -45.92 16 14 N -0.86 -37.28 2.88 -352.49 -1.02 -38.30 16 15 C -0.34 -15.94 9.37 84.03 0.79 -15.15 16 16 H 0.11 5.19 7.41 -2.91 -0.02 5.17 16 17 C 0.01 0.34 4.88 84.86 0.41 0.75 16 18 N -0.90 -45.39 9.06 21.65 0.20 -45.19 16 19 Si 0.97 38.17 29.63 68.60 2.03 40.20 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.30 -12.48 7.11 99.48 0.71 -11.78 16 23 C 0.24 9.92 4.92 84.57 0.42 10.33 16 24 C 0.26 12.78 13.34 89.44 1.19 13.98 16 25 N -0.53 -27.60 18.54 20.01 0.37 -27.22 16 26 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 0.69 7.65 -2.38 -0.02 0.67 16 28 H 0.08 0.71 7.67 -2.39 -0.02 0.69 16 29 H 0.18 1.81 6.29 -2.91 -0.02 1.79 16 30 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.16 3.65 7.32 -2.91 -0.02 3.63 16 32 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 33 H 0.13 5.04 6.45 -2.38 -0.02 5.03 16 34 H 0.13 4.22 4.81 -2.38 -0.01 4.21 16 Total: -1.00 -70.23 319.74 4.34 -65.89 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.18 Total: 6.08 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.07 Total: -0.19 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -0.10 Total: -120.09 kcal Atomic # 8 Polarization: -94.14 SS G_CDS: -4.56 Total: -98.70 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: 107.09 SS G_CDS: -0.29 Total: 106.79 kcal Total: -70.23 4.34 -65.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185567139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.810 kcal (2) G-P(sol) polarization free energy of solvation -70.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds